Enzymatic degradation of lignocellulosic biomass provides an eco-friendly approach to produce value-added macromolecules, e.g., bioactive polysaccharides. A novel acidophilic GH5 β-1,4-endoglucanase (termed TaCel5) from Trichoderma asperellum ND-1 was efficiently expressed in Komagataella phaffii (∼1.5-fold increase, 38.42 U/mL). TaCel5 displayed both endoglucanase (486.3 U/mg) and alginate lyase (359.5 U/mg) enzyme activities. It had optimal pH 3.0 and strong pH stability (exceed 86 % activity retained over pH range 3.0-5.0). 80 % activity (both endoglucanase and alginate lyase) was retained in the presence of 15 % ethanol or 3.42 M NaCl. Analysis of action mode revealed that hydrolytic activity of TaCel5 required at least three glucose (cellotriose) residues, yielding mainly cellobiose. Glu241 and Glu352 are essential catalytic residues, while Asp106, Asp277 and Asp317 play auxiliary roles in cellulose degradation. TaCel5 displayed high hydrolysis efficiency for glucan and alginate substrates. ESI-MS analysis indicated that the enzymatic hydrolysates of alginate mainly contained disaccharides and heptasaccharides. This is the first detailed report of a bifunctional GH5 endoglucanase/alginate lyase enzyme from T. asperellum. Thus TaCel5 has strong potential in food and feed industries as a catalyst for bioconversion of cellulose- and alginate-containing waste materials into value-added products oligosaccharides, which was of great benefit both for the economy and environment.

Effective production of xylooligosaccharides (XOS) with lower proportion of xylose entails unique and robust xylanases. In this study, two novel xylanases from Trichoderma asperellum ND-1 belonging to glycoside hydrolase families 10 (XynTR10) and 11 (XynTR11) were over-expressed in Komagataella phaffii X-33 and characterized to be robust enzymes with high halotolerance and ethanol tolerant. Both enzymes displayed strict substrate specificity towards beechwood xylan and wheat arabinoxylan. (Glu153/Glu258) and (Glu161/Glu252) were key catalytic sites for XynTR10 and XynTR11. Notably, XynTR11 could rapidly degrade xylan/XOS into xylobiose without xylose via transglycosylation. Direct degradation of corncob using XynTR10 and XynTR111 displayed that while XynTR10 yielded 77% xylobiose and 25% xylose, XynTR11 yielded much less xylose (11%) and comparable amounts of xylobiose (63%). XynTR10 or XynTR111 has great potential as a catalyst for bioconversion of xylan-containing agricultural waste into high-value products (biofuel or XOS), which is of significant benefit for the economy and environment.

Enzymes have been shaped by evolution over billions of years to catalyse the chemical reactions that support life on earth. Dispersed in the literature, or organised in online databases, knowledge about enzymes can be structured in distinct dimensions, either related to their quality as biological macromolecules, such as their sequence and structure, or related to their chemical functions, such as the catalytic site, kinetics, mechanism, and overall reaction. The evolution of enzymes can only be understood when each of these dimensions is considered. In addition, many of the properties of enzymes only make sense in the light of evolution. We start this review by outlining the main paradigms of enzyme evolution, including gene duplication and divergence, convergent evolution, and evolution by recombination of domains. In the second part, we overview the current collective knowledge about enzymes, as organised by different types of data and collected in several databases. We also highlight some increasingly powerful computational tools that can be used to close gaps in understanding, in particular for types of data that require laborious experimental protocols. We believe that recent advances in protein structure prediction will be a powerful catalyst for the prediction of binding, mechanism, and ultimately, chemical reactions. A comprehensive mapping of enzyme function and evolution may be attainable in the near future.

Covalent organic frameworks (COFs) are highly desirable for achieving high-efficiency overall photosynthesis of hydrogen peroxide (H2 O2 ) via molecular design. However, precise construction of COFs toward overall photosynthetic H2 O2 remains a great challenge. Herein, we report the crystalline s-heptazine-based COFs (HEP-TAPT-COF and HEP-TAPB-COF) with separated redox centers for efficient H2 O2 production from O2 and pure water. The spatially and orderly separated active sites in HEP-COFs can efficiently promote charge separation and enhance photocatalytic H2 O2 production. Compared with HEP-TAPB-COF, HEP-TAPT-COF exhibits higher H2 O2 production efficiency for integrating dual O2 reduction active centers of s-heptazine and triazine moieties. Accordingly, HEP-TAPT-COF bearing dual O2 reduction centers exhibits a remarkable solar-to-chemical energy efficiency of 0.65 % with a high apparent quantum efficiency of 15.35 % at 420 nm, surpassing previously reported COF-based photocatalysts.

Peracetic-acid-based advanced oxidation processes (PAA-AOPs) on metal-free catalysts have emerged as charming strategies for water contaminant removal. However, the involved reactive species and their corresponding active sites are ambiguous. Herein, using carbon nanotube (CNT) as a model carbocatalyst, we demonstrated that, under neutral conditions, the CNT-PAA* complex was the dominant reactive species to oxidize phenolic compounds via electron-transfer process (ETP), whereas the surface-bound hydroxyl radicals (·OHsurface) played a minor role on the basis of quenching and electrochemical tests as well as Raman spectroscopy. More importantly, the experimental and density functional theory (DFT) calculation results collaboratively proved that the active site for ETP was the sp2-hybridized carbon on the CNT bulk, while that for radical generation was the edge-located hydroxyl group (C-OH), which lowered the energy barrier for cleaving the O-O bond in CNT-PAA* complex. We further discerned the oxidation kinetic constants (koxid) of different pollutants from the apparent kinetic constants in CNT/PAA system. The significant negative linear correlation between lnkoxid and half-wave potential of phenolic compounds suggests that the pollutants with a lower one-electron oxidation potential (i.e., stronger electron-donating ability) are more easily oxidized. Overall, this study scrutinizes the hybrid radical and non-radical mechanism and the corresponding active sites of the CNT/PAA system, providing insights into the application of PAA-AOPs and the development of ETP in the remediation of emerging organic pollutants.

Maintaining the high catalytic activity of the oxygen reduction reaction (ORR) while reducing costs is a long-standing effort to promote the application of polymer electrolyte fuel cells. Here, the binding of nitrogen-containing ligands and carbon black is enhanced by controlling the pyrolysis conditions of a FeSO4 , 1,10-phenanthroline (phen), carbon black mixture, which significantly improves the ORR catalytic activity of the pyrolysis products. Preheating is proposed as a process improvement method using a heat treatment at a temperature between the melting and boiling points of phen before high-temperature pyrolysis, which achieves an effective combination of phen and carbon black, and enhances the interaction between phen and ferrous ions. This method substantially increases the number of FeNx active centers in the pyrolysis product, resulting in an impressive Fe-N/C catalyst with half-wave potential (E1/2 ) up to 0.93 V and a diffusion-limited current density (jL ) of 5.9 mA cm-2 and no obvious decay after 20 000 cyclic voltammetry cycles in 0.1 m KOH, which are all among the best-reported data known to date. The interaction between the ratio of Fe/phen and the pyrolysis conditions is also investigated. Under the right conditions, cheap raw materials can also generate highly catalytically active sites.

Active sites on catalyst surface play significant roles in oxidative species formation. The work focused on the regulation of main active sites on catalyst surface and oxidative species formation. Herein, sewage sludge (SS)-red mud (RM) complex biochar (SRCB) and N-functionalized SRCB (NSRCB) were served as activators of peroxymonosulfate (PMS) for sulfanilamide (SMX) degradation. Specially, NSRCB-1 showed excellent catalytic performance with 97.5% removal of SMX within 110 min. Additionally, the effects of N incorporation on the reconstruction of N species, conversion of intrinsic Fe species and ketonic CO groups in SRCB were studied systematically. Both radical (hydroxyl radicals (OH), sulfate radicals (SO4-) and superoxide radical (O2-)) and non-radical (electron transfer and singlet oxygen (1O2)) pathways were confirmed by quenching experiments, electron paramagnetic resonance (EPR) testing and electrochemical measurements. Ketonic CO groups, pyridinic N and pyrrolic N were responsible for non-radical pathway in SMX degradation process. Besides, Fe(II) modulated by N-doping was the main actives site for radicals generation. The contribution of active sites on catalyst surface to oxidative species formation provided fundamental basis for practical water treatment in PMS process.

In this study, caffeic acid (CA) was degraded by electrical discharge plasma combined with Mn doped CoOOH catalyst. Doping of Mn significantly improve the catalytic activity of CoOOH. CA degradation efficiency was 75.6% with dielectric barrier discharge treatment for 10 min, and it reached 97% using CoOOH as the catalyst at the same treatment time. CA was 100% degraded with only 8 min using Mn/CoOOH as the catalyst. The introduction of Mn into the lattice of CoOOH induced the formation of oxygen vacancy, causing part of coordinate number of Co decreased from 6 to 5, and thus produces unsaturated Co to be the Lewis acid sites. Lewis acid sites (unsaturated Co) could coordinate with O3 and H2O2 and break their chemical bonds to form O and -OH. Assisting in the conversion of O3 to ·OH was the main role of H2O2 in the catalytic process. The degradation products and pathway of CA were studied by three-dimensional fluorescence, liquid chromatograph-mass spectrometer and density functional theory calculations.

Ascorbate peroxidases (APX) are class I members of the Peroxidase-Catalase superfamily, a large group of evolutionarily related but rather divergent enzymes. Through mining in public databases, unusual subsets of APX homologs were identified, disclosing the existence of two yet uncharacterized families of peroxidases named ascorbate peroxidase-related (APX-R) and ascorbate peroxidase-like (APX-L). As APX, APX-R harbor all catalytic residues required for peroxidatic activity. Nevertheless, proteins of this family do not contain residues known to be critical for ascorbate binding and therefore cannot use it as an electron donor. On the other hand, APX-L proteins not only lack ascorbate-binding residues, but also every other residue known to be essential for peroxidase activity. Through a molecular phylogenetic analysis performed with sequences derived from basal Archaeplastida, the present study discloses the existence of hybrid proteins, which combine features of these three families. The results here presented show that the prevalence of hybrid proteins varies among distinct groups of organisms, accounting for up to 33% of total APX homologs in species of green algae. The analysis of this heterogeneous group of proteins sheds light on the origin of APX-R and APX-L and suggests the occurrence of a process characterized by the progressive deterioration of ascorbate-binding and catalytic sites towards neofunctionalization.

Developing high-performance cathode host materials is fundamental to solve the low utilization of sulfur, the sluggish redox kinetics, and the lithium polysulfide (LiPS) shuttle effect in lithium-sulfur batteries (LSBs). Here, a multifunctional Ag/VN@Co/NCNT nanocomposite with multiple adsorption and catalytic sites within hierarchical nanoreactors is reported as a robust sulfur host for LSB cathodes. In this hierarchical nanoreactor, heterostructured Ag/VN nanorods serve as a highly conductive backbone structure and provide internal catalytic and adsorption sites for LiPS conversion. Interconnected nitrogen-doped carbon nanotubes (NCNTs), in situ grown from the Ag/VN surface, greatly improve the overall specific surface area for sulfur dispersion and accommodate volume changes in the reaction process. Owing to their high LiPS adsorption ability, outer Co nanoparticles at the top of the NCNTs catch escaped LiPS, thus effectively suppressing the shuttle effect and enhancing kinetics. Benefiting from the multiple adsorption and catalytic sites of the developed hierarchical nanoreactors, Ag/VN@Co/NCNTs@S cathodes display outstanding electrochemical performances, including a superior rate performance of 609.7 mAh g-1 at 4 C and a good stability with a capacity decay of 0.018% per cycle after 2000 cycles at 2 C. These properties demonstrate the exceptional potential of Ag/VN@Co/NCNTs@S nanocomposites and approach LSBs closer to their real-world application.