Bond energy

  • 文章类型: Journal Article
    生酮饮食,以高脂肪和低碳水化合物含量为特征,正逐渐成为人类饮食的新视角;然而,生酮饮食的消化机制仍然未知。在这项研究中,我们探索了油-水界面,以阐明基于典型代表性的中链和长链甘油三酯的生酮饮食的消化。游离脂肪酸(FFA)的释放表明,碳链较短的三辛酸甘油酯(FFA=920.55±10.17μmol)比甘油三棕榈酸酯(851.36±9.48μmol)和甘油三硬脂酸酯(805.81±10.03μmol)明显更易消化。粒度分析表明,碳链的长度增加了甘油三酯的大小,导致与脂肪酶的接触面积减少。界面现象表明,甘油三酯的碳链越长,消化液中与盐离子的结合能力降低越大。荧光光谱分析表明,碳链的长度诱导了脂肪酶峰的置换,表明碳链长度可以改变脂肪酶的结构。分子动力学模拟表明,甘油三酯的碳链越长,更容易松开脂肪酶的结构。键能分析表明,甘油三酯的碳链长度与酯键的键能强度呈正相关。总之,这项研究强调生酮饮食应主要由较短的碳链甘油三酯组成,因为碳链长度可以改变甘油三酯的消化。这为寻求更有效的生酮饮食提供了新的视角,符合当前健康饮食的观点。
    Ketogenic diet, characterized by high fat and low carbohydrate content, is gradually becoming a new perspective in the human diet; however, the mechanism of digestion of ketogenic diet remains unknown. In this study, we explored the oil-water interface to elucidate the digestion of a ketogenic diet based on typical representative medium- and long-chain triglycerides. The free fatty acids (FFAs) release indicated that glycerol trioctanoate with a shorter carbon chain (FFA = 920.55 ± 10.17 μmol) was significantly more digestible than glycerol tripalmitate (851.36 ± 9.48 μmol) and glycerol tristearate (805.81 ± 10.03 μmol). Particle size analysis revealed that the length of the carbon chain increased the size of triglycerides, resulting in a decreased contact area with lipase. The interfacial phenomenon indicated that the longer the carbon chain of triglycerides, the greater the reduction in binding capacity with salt ions in the digestive solution. Fluorescence spectroscopy analysis showed that the length of the carbon chain induced the displacement of the lipase peak, suggesting that the carbon chain length could alter the structure of lipase. Molecular dynamics simulation showed that the longer the carbon chain of triglycerides, the easier it was to loosen the structure of lipase. Bond energy analysis showed that the carbon chain length of triglycerides was positively correlated with the bond energy strength of the ester bonding. In conclusion, this study emphasizes that the ketogenic diet should primarily consist of shorter carbon chain triglycerides because carbon chain length can alter the digestion of triglycerides. This provides a new perspective on the quest for more effective ketogenic diet, in line with the current view of healthy diet.
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  • 文章类型: Journal Article
    计算辅助分子设计的新兴领域将围绕着使计算对合成化学家有用的能力而建立,这些化学家利用基于经验的化学直觉来合成新的有用分子。这一事实带来了一个困境,因为许多现有的化学直觉都是用化学键的语言来构建的,被描绘成具有物理性质。不幸的是,有人认为,计算这些键的性质是不可能的,因为化学键不存在。对于许多计算化学界来说,债券被视为神秘的-化学世界的独角兽。这里,我们证明情况并非如此。使用相同的形式主义和概念来阐明分子中的原子,我们照亮连接它们的纽带。化学键的真实空间类似物成为分子中原子的扩展量子理论(QTAIM)中的键束。我们证明键束具有通常与化学键相关的所有特性,包括能量和电子计数。此外,债券束的特征在于许多非传统属性,包括,显著,一个边界。我们展示,从固态和分子化学中提取的例子,键束的计算特性与滋养化学直觉的特性一致。我们走得更远,然而,并表明键束为分子和材料的结构和性质提供了新的可量化的见解。
    The nascent field of computationally aided molecular design will be built around the ability to make computation useful to synthetic chemists who draw on their empirically based chemical intuition to synthesize new and useful molecules. This fact poses a dilemma, as much of existing chemical intuition is framed in the language of chemical bonds, which are pictured as possessing physical properties. Unfortunately, it has been posited that calculating these bond properties is impossible because chemical bonds do not exist. For much of the computationalchemistry community, bonds are seen as mythical-the unicorns of the chemical world. Here, we show that this is not the case. Using the same formalism and concepts that illuminated the atoms in molecules, we shine light on the bonds that connect them. The real space analogue of the chemical bond becomes the bond bundle in an extended quantum theory of atoms in molecules (QTAIM). We show that bond bundles possess all the properties typically associated with chemical bonds, including an energy and electron count. In addition, bond bundles are characterized by a number of nontraditional attributes, including, significantly, a boundary. We show, with examples drawn from solid state and molecular chemistry, that the calculated properties of bond bundles are consistent with those that nourish chemical intuition. We go further, however, and show that bond bundles provide new and quantifiable insights into the structure and properties of molecules and materials.
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  • 文章类型: Journal Article
    在这项工作中,通过固态反应制备了Cu取代的MgAl2O4陶瓷。晶体结构,阳离子分布,研究了Mg1-xCuxAl2O4陶瓷的微波介电性能。Cu2+进入MgAl2O4晶格并形成尖晶石结构。Cu2离子取代Mg2离子有助于Al3离子优先占据八面体,并改变了反转程度。品质因数(Qf)值,这与反转程度相关,在x=0.04时增加到最大值,然后减小。离子极化率和相对密度影响介电常数(εr)值。谐振频率的温度系数(τf)值,它由总的键能主导,通常转向正方向。在x=0.04时实现了令人满意的微波介电性能,并在1550°C下烧结:εr=8.28,Qf=72,800GHz,和τf=-59ppm/℃。Mg1-xCuxAl2O4固溶体,拥有良好的性能,在现代电信技术领域具有应用潜力。
    In this work, Cu-substituted MgAl2O4 ceramics were prepared via solid-state reaction. The crystal structure, cation distribution, and microwave dielectric properties of Mg1-xCuxAl2O4 ceramics were investigated. Cu2+ entered the MgAl2O4 lattice and formed a spinel structure. The substitution of Cu2+ ions for Mg2+ ions contributed to Al3+ ions preferential occupation of the octahedron and changed the degree of inversion. The quality factor (Qf) value, which is correlated with the degree of inversion, increased to a maximum value at x = 0.04 and then decreased. Ionic polarizability and relative density affected the dielectric constant (εr) value. The temperature coefficient of the resonant frequency (τf) value, which was dominated by the total bond energy, generally shifted to the positive direction. Satisfactory microwave dielectric properties were achieved in x = 0.04 and sintered at 1550 °C: εr = 8.28, Qf = 72,800 GHz, and τf = -59 ppm/°C. The Mg1-xCuxAl2O4 solid solution, possessing good performance, has potential for application in the field of modern telecommunication technology.
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  • 文章类型: Journal Article
    使用先前由B3LYP/6-311G(d,p)//DFTB用于2263个sp3C-H共价键。最好的属性集包括碳原子的114个描述符(核原子和环描述符周围的5个球体中的原子类型计数)。优化后的模型预测了由224个键组成的独立测试集的DFT计算的BDE,MAE=2.86kcal/mol。来自iBonD数据库(http://ibond。南开。edu.cn)是由RF预测的,其MAE适中(5.36kcal/mol),但相对于实验能量的R2相对较高(0.75)。探索了一种预测方案,该方案通过在实验数据的附加存储器中观察到的k个最近邻居(KNN)的平均偏差来校正RF预测。对于145个键的独立测试集和相应的实验键能,校正后的预测达到MAE=2.22kcal/mol。
    Random Forest (RF) QSPR models were developed with a data set of homolytic bond dissociation energies (BDE) previously calculated by B3LYP/6-311++G(d,p)//DFTB for 2263 sp3C-H covalent bonds. The best set of attributes consisted in 114 descriptors of the carbon atom (counts of atom types in 5 spheres around the kernel atom and ring descriptors). The optimized model predicted the DFT-calculated BDE of an independent test set of 224 bonds with MAE=2.86 kcal/mol. A new data set of 409 bonds from the iBonD database (http://ibond.nankai.edu.cn) was predicted by the RF with a modest MAE (5.36 kcal/mol) but a relatively high R2 (0.75) against experimental energies. A prediction scheme was explored that corrects the RF prediction with the average deviation observed for the k nearest neighbours (KNN) in an additional memory of experimental data. The corrected predictions achieved MAE=2.22 kcal/mol for an independent test set of 145 bonds and the corresponding experimental bond energies.
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  • 文章类型: Journal Article
    腐烂的病原体遵循不同的代谢机制,对木本组织造成不可逆的损害。这项研究的目的是使用衰减全反射傅里叶变换红外光谱进行物种间和物种内微生物细胞结构比较。代表性真菌种类,导致褐腐和白腐,即,胎盘和杂色后,分别,在实验室条件下培养。以真菌生长的周期性两周间隔进行体外光谱测量。该研究显示了两种真菌的结构差异。蛋白质酰胺的突出存在,碳水化合物和羧基带是感兴趣的。大约3300cm-1的红外宽带的光谱反卷积在四个不同的波数处产生了峰。在四个波数处获得的氢键能,从反卷积,从约41kJmol-1到约7kJmol-1不等,表明微生物细胞结构中存在强弱力。氢键距离,在去卷积波数处获得,在2.7µ-2.8µ之间变化,表明微生物细胞内存在短距离和长距离力。显微镜观察显示菌丝定植,菌丝尖端和侧枝。
    Decay pathogens follow dissimilar metabolic mechanisms to cause irreversible damage to woody tissues. The objective of this study is to perform inter- and intra-species microbial cell structural comparison using attenuated total reflectance Fourier transform infrared spectroscopy. Representative fungi species, causing brown rot and white rot, namely, Postia placenta and Trametes versicolor, respectively, were cultured in laboratory conditions. In vitro spectral measurements were performed at periodic two week intervals of fungal growth. The study shows structural differences for both species of fungi. The prominent presence of protein amide, carbohydrate and carboxyl bands was of interest. Spectral deconvolution of the infrared broadband around approximately 3300 cm-1 produced peaks at four different wavenumbers. The hydrogen bond energy obtained at the four wavenumbers, from deconvolution, varied from approximately 41 kJ mol-1 to approximately 7 kJ mol-1, indicating the presence of strong and weak forces in microbial cell structure. The hydrogen bond distance, obtained at the deconvoluted wavenumbers, varied between 2.7 Å-2.8 Å, indicating the presence of short and long-distance forces within microbial cells. Microscopic observation showed mycelium colonization, hyphal tip and lateral branching.
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  • 文章类型: Journal Article
    铜(I),silver(I),和金(I)金属通过σ键和π背键相互作用结合π配体。使用具有给电子和吸电子取代基的双齿辅助配体研究了这些相互作用。π配体从乙烯到较大的末端和内部烯烃和炔烃。X射线晶体学结果,NMR,红外光谱和气相实验表明,结合能以Ag The copper(I), silver(I), and gold(I) metals bind π-ligands by σ-bonding and π-back bonding interactions. These interactions were investigated using bidentate ancillary ligands with electron donating and withdrawing substituents. The π-ligands span from ethylene to larger terminal and internal alkenes and alkynes. Results of X-ray crystallography, NMR, and IR spectroscopy and gas phase experiments show that the binding energies increase in the order Ag
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  • 文章类型: Journal Article
    We have quantum chemically analyzed element-element bonds of archetypal Hn X-YHn molecules (X, Y=C, N, O, F, Si, P, S, Cl, Br, I), using density functional theory. One purpose is to obtain a set of consistent homolytic bond dissociation energies (BDE) for establishing accurate trends across the periodic table. The main objective is to elucidate the underlying physical factors behind these chemical bonding trends. On one hand, we confirm that, along a period (e. g., from C-C to C-F), bonds strengthen because the electronegativity difference across the bond increases. But, down a period, our findings constitute a paradigm shift. From C-F to C-I, for example, bonds do become weaker, however, not because of the decreasing electronegativity difference. Instead, we show that the effective atom size (via steric Pauli repulsion) is the causal factor behind bond weakening in this series, and behind the weakening in orbital interactions at the equilibrium distance. We discuss the actual bonding mechanism and the importance of analyzing this mechanism as a function of the bond distance.
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  • 文章类型: Journal Article
    键能通常是化学键的主要特征,尤其是非共价相互作用的主要特征。相互作用能的表达估计的简单方法,Eint,使用Eint和从实验中容易获得的性质之间的关系对于表征非共价相互作用非常重要。在这项工作中,Eint和电子密度之间的实际重要关系,它的拉普拉斯,曲率,潜力,动力学,对于[Z-I··Hal]-和[Z-Hal··I]-类型的结构,得出了键临界点的总能量密度以及键长,这些结构带有卤键并涉及碘作为相互作用原子(总共412个结构)。发现的相关性的平均绝对偏差为2.06-4.76kcal/mol。
    Bond energy is the main characteristic of chemical bonds in general and of non-covalent interactions in particular. Simple methods of express estimates of the interaction energy, Eint, using relationships between Eint and a property which is easily accessible from experiment is of great importance for the characterization of non-covalent interactions. In this work, practically important relationships between Eint and electron density, its Laplacian, curvature, potential, kinetic, and total energy densities at the bond critical point as well as bond length were derived for the structures of the [Z-I···Hal]- and [Z-Hal···I]- types bearing halogen bonds and involving iodine as interacting atom(s) (totally 412 structures). The mean absolute deviations for the correlations found were 2.06-4.76 kcal/mol.
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  • 文章类型: Journal Article
    我们对典型的路易斯酸和碱之间的键合进行了量子化学研究。我们对X3B-NY3刘易斯对的最新计算揭示了B-N键强度系统增加的起源,因为X和Y从F到Cl变化,Br,I,H.对于H3B-NY3,键合趋势由供体-受体[HOMO(碱)-LUMO(酸)]相互作用的普遍接受的机制驱动。有趣的是,对于X3B-NH3,键合机制由使BX3变形为其在加合物中采用的锥体几何形状所需的能量决定。因此,可以更容易地金字塔化的路易斯酸与路易斯碱形成更强的键。从BF3到BI3的金字塔化应变能的降低是由B-X键强度的减弱直接引起的,这主要源于分子平面中的键合(σ样),而不是π系统中的键合,与目前接受的机制不同。
    We have quantum chemically investigated the bonding between archetypical Lewis acids and bases. Our state-of-the-art computations on the X3 B-NY3 Lewis pairs have revealed the origin behind the systematic increase in B-N bond strength as X and Y are varied from F to Cl, Br, I, H. For H3 B-NY3 , the bonding trend is driven by the commonly accepted mechanism of donor-acceptor [HOMO(base)-LUMO(acid)] interaction. Interestingly, for X3 B-NH3 , the bonding mechanism is determined by the energy required to deform the BX3 to the pyramidal geometry it adopts in the adduct. Thus, Lewis acids that can more easily pyramidalize form stronger bonds with Lewis bases. The decrease in the strain energy of pyramidalization on going from BF3 to BI3 is directly caused by the weakening of the B-X bond strength, which stems primarily from the bonding in the plane of the molecule (σ-like) and not in the π system, at variance with the currently accepted mechanism.
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  • 文章类型: Journal Article
    量子化学计算和NBO,ETS-NOCV,已对C供体配体稳定的二氢铵阳离子进行了QTAIM和ELF解释方法。从轨道定位获得的C-Bπ键强度的许多描述符,已计算出39个C供体配体的能量分配或拓扑方法以及结构和化学参数,包括N-杂环卡宾和碳。结果的比较允许识别π相互作用的相对和绝对描述符。对于两个描述符家族,都获得了极好的相关性。这使得π捐赠能力量表的建立成为可能,并表明解释方法,尽管他们在概念上存在差异,描述相同的化学性质。这些结果也揭示了这些流行方法的明显缺点,以及需要采取的一些预防措施来充分解释其结果。
    Quantum chemical calculations and NBO, ETS-NOCV, QTAIM and ELF interpretative approaches have been carried out on C-donor ligand-stabilized dihydrido borenium cations. Numerous descriptors of the C-B π-bond strength obtained from orbital localization, energy partitioning or topological methods as well as from structural and chemical parameters have been calculated for 39 C-donor ligands including N-heterocyclic carbenes and carbones. Comparison of the results allows the identification of relative and absolute descriptors of the π interaction. For both families of descriptors excellent correlations are obtained. This enables the establishment of a π-donation capability scale and shows that the interpretative methods, despite their conceptual differences, describe the same chemical properties. These results also reveal noticeable shortcomings in these popular methods, and some precautions that need to be taken to interpret their results adequately.
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