Biospeleology

Biospeleology
  • 文章类型: Journal Article
    洞穴是以空间限制为特征的独特环境,部分或完全没有直射光,以及有机碳和营养物质的匮乏。洞穴是各种适应的动物和微生物如真菌的庇护所,其中许多仍然未知。Amphichorda是一种真菌属,属于Bionectriaceae科,其中包括具有生物技术应用的洞穴居住和昆虫病原物种。在这项研究中,使用ITS的形态学和多基因座系统发育分析鉴定了一种新的真菌物种,LSU,和TEF基因座,位于埃斯皮哈索山脉南部的GrutaVelhaNova石灰岩洞穴中,Monjolos,米纳斯吉拉斯州,巴西。在马铃薯葡萄糖琼脂平板暴露于洞穴环境期间,来自Rhaphidophoridae家族的昆虫经过并以培养基为食,导致三个真菌分离。系统发育分析表明,这些分离株形成了一个不同于所有已知物种的进化枝,引导我们引入一个新物种,Amphichordamonjolensis,这可能与这种昆虫有关。这里,我们还为Bionectrieae中的acremonum样真菌提出了两种新的组合:Bulbitheciumglobososporum(同义词:Acremoniumglobososporum)和Hapsisporacurva(同义词:Acremoniumcurum)。A.monjolensis的发现凸显了洞穴作为具有重大生物技术重要性的新物种的庇护所的潜力。
    Caves are unique environments characterized by spatial limitations, partial or total absence of direct light, and scarcity of organic carbon and nutrients. Caves are shelters for a variety of adapted animals and microorganisms such as fungi, many of which are still unknown. Amphichorda is a fungal genus belonging to the family Bionectriaceae, which includes cave-dwelling and entomopathogenic species with biotechnological applications. In this study, a new fungal species was identified using morphological and multi-locus phylogenetic analyses of the ITS, LSU, and TEF loci, in the Gruta Velha Nova limestone cave located in the Southern Espinhaço Range, Monjolos, Minas Gerais, Brazil. During the exposure of potato dextrose agar plates to the cave environment, an insect from the family Rhaphidophoridae passed by and fed on the culture medium, resulting in three fungal isolates. Phylogenetic analyses showed that these isolates formed a clade distinct from all known species, leading us to introduce a new species, Amphichorda monjolensis, which may be associated with this insect. Here, we also proposed two new combinations for species of acremonium-like fungi in the Bionectriaceae: Bulbithecium globosisporum (synonym: Acremonium globosisporum) and Hapsidospora curva (synonym: Acremonium curvum). The discovery of A. monjolensis highlights the potential of caves as shelters for new species with significant biotechnological importance.
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  • 文章类型: Journal Article
    地下生态系统是地球上最广泛的环境之一,然而我们仍然对它们的生物多样性知之甚少。为了提高人们对地下生态系统的认识,他们提供的基本服务,以及他们独特的保护挑战,2021年和2022年被指定为国际洞穴和喀斯特年。由于这些生态系统传统上在全球保护议程和多边协议中被忽视,对基于解决方案的保护地下生物群和相关栖息地的方法进行定量评估是及时的。这项评估使研究人员和从业人员能够了解地下生态和管理方面的进展和研究需求。我们对全球地下生态系统的同行评审和灰色文献进行了系统回顾(陆地,淡水,和盐水系统),量化保护干预措施有效性的现有证据基础。我们选择了1964年至2021年的708份出版物,推荐,或在地下生态系统中实施了1,954项保护干预措施。我们注意到,从2000年代开始,研究数量急剧增加,令人惊讶的是,近年来,量化保护干预措施影响的研究比例稳步显著下降.31%的保护干预措施的有效性已经过统计检验。我们进一步强调,所报告的研究中有64%发生在古和近海生物地理区域。对保护干预措施有效性的评估严重偏向于间接措施(监测和风险评估),有限的生物样本(主要是节肢动物和蝙蝠),和更容易进入的系统(地面洞穴)。我们的结果表明,地下生物学领域的大多数保护科学都没有采用严格的定量方法,导致干预措施有效性的证据很少。这就提出了一个重要的问题,即如何使保护工作更加可行地实施,成本效益高,和持久的。虽然没有单一的补救措施,我们提出了一套潜在的解决方案,以使我们的工作更加集中于增加统计测试,并强调标准化研究报告以促进荟萃分析练习的重要性。我们还提供了一个数据库,总结了现有的文献,这将有助于建立有关干预措施的定量知识,这些干预措施可能会根据感兴趣的地下物种和栖息地产生最大的影响。我们认为这是一个起点,以摆脱基于轶事和专家信息而不是科学证据推荐保护干预措施的普遍趋势,没有定量测试它们的有效性。
    Subterranean ecosystems are among the most widespread environments on Earth, yet we still have poor knowledge of their biodiversity. To raise awareness of subterranean ecosystems, the essential services they provide, and their unique conservation challenges, 2021 and 2022 were designated International Years of Caves and Karst. As these ecosystems have traditionally been overlooked in global conservation agendas and multilateral agreements, a quantitative assessment of solution-based approaches to safeguard subterranean biota and associated habitats is timely. This assessment allows researchers and practitioners to understand the progress made and research needs in subterranean ecology and management. We conducted a systematic review of peer-reviewed and grey literature focused on subterranean ecosystems globally (terrestrial, freshwater, and saltwater systems), to quantify the available evidence-base for the effectiveness of conservation interventions. We selected 708 publications from the years 1964 to 2021 that discussed, recommended, or implemented 1,954 conservation interventions in subterranean ecosystems. We noted a steep increase in the number of studies from the 2000s while, surprisingly, the proportion of studies quantifying the impact of conservation interventions has steadily and significantly decreased in recent years. The effectiveness of 31% of conservation interventions has been tested statistically. We further highlight that 64% of the reported research occurred in the Palearctic and Nearctic biogeographic regions. Assessments of the effectiveness of conservation interventions were heavily biased towards indirect measures (monitoring and risk assessment), a limited sample of organisms (mostly arthropods and bats), and more accessible systems (terrestrial caves). Our results indicate that most conservation science in the field of subterranean biology does not apply a rigorous quantitative approach, resulting in sparse evidence for the effectiveness of interventions. This raises the important question of how to make conservation efforts more feasible to implement, cost-effective, and long-lasting. Although there is no single remedy, we propose a suite of potential solutions to focus our efforts better towards increasing statistical testing and stress the importance of standardising study reporting to facilitate meta-analytical exercises. We also provide a database summarising the available literature, which will help to build quantitative knowledge about interventions likely to yield the greatest impacts depending upon the subterranean species and habitats of interest. We view this as a starting point to shift away from the widespread tendency of recommending conservation interventions based on anecdotal and expert-based information rather than scientific evidence, without quantitatively testing their effectiveness.
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  • 文章类型: Journal Article
    地下环境拥有大量的生物多样性,然而,评估生活在地下的物种的分布仍然极具挑战性。环境DNA(eDNA)metabarcoding是在鲜为人知的环境中估算生物多样性的强大工具,并且对土壤生物具有出色的性能。这里,我们测试了1)来自洞穴土壤/沉积物的eDNA元编码是否可以成功检测到跳尾(Hexapoda:Collembola)和昆虫(Hexapoda:昆虫纲);2)eDNA是否主要代表本地(洞穴居住)生物,或者它也包含来自生活在地表环境中的物种的信息;3)不同生态的分类群的eDNA检测概率是否发生变化。环境DNA元编码分析检测到昆虫和跳尾虫的大量分子操作分类单位(MOTU)。对于跳尾巴,检测概率很高,有相当比例的伪质物种,这表明eDNA提供了有关这些生物在洞穴中分布的良好信息。相反,对于昆虫来说,大多数MOTU代表生活在洞穴外的类群,它们中的大多数代表生活在淡水环境中的类群/生物体(星翅目,科翅目和毛翅目)。淡水昆虫的eDNA在洞穴的深处特别丰富,远离入口。此外,昆虫的平均检测概率明显低于跳尾虫。这表明洞穴土壤/沉积物充当“生物多样性信息的传送带”,可能是因为渗滤的水导致生活在附近地区的生物体的eDNA积累。洞穴土壤中保存着土生和异源eDNA的复杂混合物。eDNA提供了有关未充分研究的地下洞穴生物的前所未有的信息;对检测概率和占有率的分析可以帮助将本地eDNA与代表整个景观的空间整合生物多样性的eDNA区分开。
    Subterranean environments host a substantial amount of biodiversity, however assessing the distribution of species living underground is still extremely challenging. Environmental DNA (eDNA) metabarcoding is a powerful tool to estimate biodiversity in poorly known environments and has excellent performance for soil organisms. Here, we tested 1) whether eDNA metabarcoding from cave soils/sediments allows to successfully detect springtails (Hexapoda: Collembola) and insects (Hexapoda: Insecta); 2) whether eDNA mostly represents autochthonous (cave-dwelling) organisms or it also incorporates information from species living in surface environments; 3) whether eDNA detection probability changes across taxa with different ecology. Environmental DNA metabarcoding analyses detected a large number of Molecular Operational Taxonomic Units (MOTUs) for both insects and springtails. For springtails, detection probability was high, with a substantial proportion of hypogean species, suggesting that eDNA provides good information on the distribution of these organisms in caves. Conversely, for insects most of MOTUs represented taxa living outside caves, and the majority of them represented taxa/organisms living in freshwater environments (Ephemeroptera, Plecoptera and Trichoptera). The eDNA of freshwater insects was particularly abundant in deep sectors of caves, far from the entrance. Furthermore, average detection probability of insects was significantly lower than the one of springtails. This suggests that cave soils/sediments act as \"conveyer belts of biodiversity information\", possibly because percolating water lead to the accumulation of eDNA of organisms living in nearby areas. Cave soils hold a complex mix of autochthonous and allochthonous eDNA. eDNA provided unprecedented information on the understudied subterranean cave organisms; analyses of detection probability and occupancy can help teasing apart local eDNA from the eDNA representing spatially-integrated biodiversity for whole landscape.
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  • 文章类型: Journal Article
    一种新的CryptopsLeach,1814年,C.speleorexsp。11月。,从Movile洞穴描述,Dobrogea,罗马尼亚。该洞穴因其独特的生态系统完全依赖甲烷和硫氧化细菌而引人注目。直到现在,该洞穴被认为居住着epigean物种C.这在欧洲很普遍。尽管它类似于C.新物种在形态和分子上都有明确的定义,基于两个线粒体(细胞色素c氧化酶亚基ICOI和16SrDNA)和一个核(28SrDNA)标记。Cryptopsspeleorexsp.11月。显示了许多象形特征,如一般大的身体和细长的附属物和螺旋,最终腿的胫骨上有更多的髋部毛孔和锯齿。有了这个记录,从Movile洞穴中已知的特有物种数量达到35种,将其列为世界上物种最丰富的洞穴之一。
    A new species of Cryptops Leach, 1814, C. speleorex sp. nov., is described from Movile Cave, Dobrogea, Romania. The cave is remarkable for its unique ecosystem entirely dependent on methane- and sulfur-oxidising bacteria. Until now, the cave was thought to be inhabited by the epigean species C. anomalans, which is widespread in Europe. Despite its resemblance to C. anomalans, the new species is well-defined morphologically and molecularly based on two mitochondrial (cytochrome c oxidase subunit I COI and 16S rDNA) and one nuclear (28S rDNA) markers. Cryptops speleorex sp. nov. shows a number of troglomorphic traits such as a generally large body and elongated appendages and spiracles, higher number of coxal pores and saw teeth on the tibia of the ultimate leg. With this record, the number of endemic species known from the Movile Cave reaches 35, which ranks it as one of the most species-rich caves in the world.
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  • 文章类型: Journal Article
    一种新的Cryptops,C.(加密)legagussp。11月。,发生在博茨瓦纳西北部的Koanaka和GcwihabaHills的洞穴中。使用18SrRNA的贝叶斯分子系统发育学,28SrRNA,16SrRNA和细胞色素c氧化酶亚基I证实了对隐形虫亚属的形态分配,并与南非南部温带物种最接近,澳大利亚和新西兰。新物种没有被明显修饰为troglomorph。
    A new species of Cryptops, C. (Cryptops) legagussp. nov., occurs in caves in the Koanaka and Gcwihaba Hills in northwestern Botswana. Bayesian molecular phylogenetics using 18S rRNA, 28S rRNA, 16S rRNA and cytochrome c oxidase subunit I corroborates a morphological assignment to the subgenus Cryptops and closest affinities to southern temperate species in South Africa, Australia and New Zealand. The new species is not conspicuously modified as a troglomorph.
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  • 文章类型: Journal Article
    五十年前,一篇题为《洞穴环境》的具有里程碑意义的论文预示着洞穴是理想的自然实验实验室,可以在其中开发和解决地质学中的一般问题,生态学,生物地理学,和进化生物学。尽管地下生物学家一直提倡将洞穴作为实验室范式,很少有研究成功地将其结果转化为一般原则的例子。当代大数据时代,建模工具,遗传学和(元)基因组学的革命性进步提供了重新审视未解决的问题和挑战的机会,以及研究有希望的地下生物学研究新途径。因此,我们制定了一个路线图,通过采用完善的“地平线扫描”方法来指导地下生物学的未来研究工作,以确定六个学科领域中最优先的研究问题。根据来自世界各地的30名具有互补专业知识和不同学术年龄的科学家的专家意见,我们收集了258个基本问题的初始列表,集中于宏观生态学和微生物生态学,适应,进化,和保护。随后,通过在线调查,130名具有不同背景的地下生物学家帮助我们将清单减少到50个最优先的问题。这些研究问题范围广泛,准备在未来十年内解决。我们相信,这项工作将刺激研究对地下生物学有更深入的了解,并促进假设驱动的研究可能会从该领域的传统边界中产生广泛的共鸣。
    Five decades ago, a landmark paper in Science titled The Cave Environment heralded caves as ideal natural experimental laboratories in which to develop and address general questions in geology, ecology, biogeography, and evolutionary biology. Although the \'caves as laboratory\' paradigm has since been advocated by subterranean biologists, there are few examples of studies that successfully translated their results into general principles. The contemporary era of big data, modelling tools, and revolutionary advances in genetics and (meta)genomics provides an opportunity to revisit unresolved questions and challenges, as well as examine promising new avenues of research in subterranean biology. Accordingly, we have developed a roadmap to guide future research endeavours in subterranean biology by adapting a well-established methodology of \'horizon scanning\' to identify the highest priority research questions across six subject areas. Based on the expert opinion of 30 scientists from around the globe with complementary expertise and of different academic ages, we assembled an initial list of 258 fundamental questions concentrating on macroecology and microbial ecology, adaptation, evolution, and conservation. Subsequently, through online surveys, 130 subterranean biologists with various backgrounds assisted us in reducing our list to 50 top-priority questions. These research questions are broad in scope and ready to be addressed in the next decade. We believe this exercise will stimulate research towards a deeper understanding of subterranean biology and foster hypothesis-driven studies likely to resonate broadly from the traditional boundaries of this field.
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  • 文章类型: Journal Article
    LithobiusmaticiVerhoeff,根据类型材料和新收集的标本重新描述了1899。StrandiolusjugoslavicusHoffer,1937年,从波斯尼亚和黑塞哥维那同一地区的另一个洞穴中描述,被呈现为L.matulici的初级主观同义词(syn.11月。).L.matulici被证明与LithobiusremyiJawswowski最密切相关,1933年,ThracolidobiusMatic亚属的类型物种,1962.讨论了附生柯索石上几丁质系的完整性,这是Lithobiomorpha内种间分化的有希望的特征。记录了迄今为止未知的半水生行为,这些行为来自Herzegovinian的L.matulici和其他居住在洞穴中的cave。介绍了黑山和比利牛斯洞穴。
    Lithobiusmatulici Verhoeff, 1899 is redescribed based on type material and newly collected specimens. Strandiolusjugoslavicus Hoffer, 1937, described from another cave in the same region in Bosnia and Hercegovina, is presented as a junior subjective synonym of L.matulici (syn. nov.). L.matulici is shown to be most closely related to Lithobiusremyi Jawłowski, 1933, type species of the subgenus Thracolithobius Matic, 1962. The completeness of the chitin-lines on the forcipular coxosternite is discussed as a promising character for interspecific differentiation within Lithobiomorpha. Documentation of hitherto unknown semiaquatic behaviour in L.matulici and other cave-dwelling centipede species from Herzegovinian-, Montenegrin- and Pyrenean caves is presented.
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  • 文章类型: Journal Article
    This paper is the first in a series describing the previously unstudied cave spiders from Cyprus. Two new species, Dysderocrateskibrisensis sp. n. and Harpacteakalavachiana sp. n., are described. Detailed morphological descriptions and diagnostic characteristics are presented. This is the first report of the genus Dysderocrates Deeleman-Reinhold & Deeleman, 1988 from Cyprus.
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  • 文章类型: Journal Article
    微污名科由两个亚科组成,微柱头科和微藻科,7属16种。微藻是单型的,包括微霉菌platnick和Forster物种,1982年巴拿马一个新的属,Tonton被描述为Micromygalinae的新成员。MasteriaemobabaPedroso,Baptista&Bertani,2015年,将其转移到新属,并描述了来自巴西的六个新物种并归因于Tontongen。n.:类型物种,T.itabiritosp.n.,T.quecasp.n.,T.matodentrosp.n.和T.sapalosp.n.,全部来自米纳斯吉拉斯州;T.ipiausp.n.来自巴伊亚州和T.quiteriasp.n.来自马拉尼昂州。在海绵状物种中,只有T.itabiritosp.n.由于完全没有眼睛而被认为是长尾状的。
    The family Microstigmatidae is composed of two subfamilies, Microstigmatinae and Micromygalinae, seven genera and 16 species. Micromygalinae is monotypic, comprising the species Micromygalediblemma Platnick & Forster, 1982 from Panama. A new genus, Tonton is described as a new member of the Micromygalinae. Masteriaemboaba Pedroso, Baptista & Bertani, 2015, is transferred to the new genus and six new species from Brazil are described and attributed to Tonton gen. n.: the type species, T.itabirito sp. n., T.queca sp. n., T.matodentro sp. n. and T.sapalo sp. n., all from the state of Minas Gerais; T.ipiau sp. n. from the state of Bahia and T.quiteria sp. n. from the state of Maranhão. Among the cavernicolous species, only T.itabirito sp. n. is considered troglobitic by the total absence of eyes.
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  • 文章类型: Journal Article
    The orb-weaver spider Meta bourneti Simon 1922 (Araneae: Tetragnathidae) is one of the most common cave predators occurring in the Mediterranean basin. Although the congeneric M. menardi represented the model species in several studies, our knowledge of M. bourneti is only founded on observations performed on a handful of populations. In this study M. bourneti spiders were studied in caves of Monte Albo (Sardinia, Italy) over a year. Generalized Linear Mixed Models were used to analyze spider occupancy inside cave environments, as well as spider abundance. Analyses on M. bourneti occupancy and abundance were also repeated for adults and juveniles separately. Generalized Linear Models, were used to weight species absence based on its detection probability. Linear Mixed Models were used to detect possible divergences in subterranean spatial use between adult and juvenile spiders. Although widespread on the mountain, M. bourneti generally showed low density and low detection probability. Most of the individuals observed were juveniles. The spiders generally occupied cave sectors with high ceilings that were deep enough to show particular microclimatic features. Adults tended to occupy less illuminated areas than juveniles, while the latter were more frequently found in sectors showing high humidity. The abundance of M. bourneti was strongly related to high humidity and the presence of two troglophile species, Hydromantes flavus Wake, Salvador & Alonso-Zarazaga, 2005 (Amphibia: Caudata) and Oxychilus oppressus (Shuttleworth, 1877) (Gastropoda: Panpulmonata). The abundance of juveniles was related to sector temperature and humidity, the presence of H. flavus and O. oppressus and to morphological sector features. However, when only adults were considered, no significant relationships were found. Adult and juvenile spiders did not differ in their spatial distribution inside the caves studied, but a seasonal distribution of the species along cave walls was observed. Microclimate was one of the most important features affecting both the presence and abundance of M. bourneti in subterranean environments. Individuals tended to occupy lower heights during hot seasons.
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