Beta-lactam

β - 内酰胺
  • 文章类型: Journal Article
    脓肿分枝杆菌肺病的治疗需要多种抗生素,包括静脉注射β-内酰胺类(例如,亚胺培南)。脓肿分枝杆菌产生β-内酰胺酶(BlaMab),使β-内酰胺药物失活,但碳青霉烯类药物效率较低。由于脓肿分枝杆菌的内在和获得性耐药性以及不良的临床结果,了解宿主内部和爆发环境中抗生素耐药性的发展至关重要。我们比较了连续纵向收集的M.脓肿亚种。囊性纤维化中心爆发的索引病例中的massiliense分离株和四个与爆发相关的菌株。我们在后来的患者分离物中发现了惊人的高亚胺培南耐药性,包括爆发菌株(MIC>512µg/mL)。该现象在细胞内细菌暴露于亚胺培南时被概括。添加β-内酰胺酶抑制剂阿维巴坦消除了抗性表型。亚胺培南抗性是由β-内酰胺酶活性增加和blaMabmRNA水平增加引起的。先前ppiA基因转录的同时增加表明抗性菌株中整个操纵子的上调。孔蛋白mspA的缺失与MIC的第一次增加(从8到32μg/mL)一致。负责粗糙菌落形态的msp2移码突变和ATP依赖性解旋酶hrpA中的SNP与MIC的第二次增加(从32到256µg/mL)同时发生。增加的BlaMab表达和酶活性可能是由于突变的HrpA单独或与上述其他基因组合对ppiA-blaMab操纵子的调节改变。这项工作支持使用碳青霉烯/β-内酰胺酶抑制剂组合治疗脓肿分枝杆菌,特别是耐亚胺培南菌株。
    Treatment of Mycobacterium abscessus pulmonary disease requires multiple antibiotics including intravenous β-lactams (e.g., imipenem). M. abscessus produces a β-lactamase (BlaMab) that inactivates β-lactam drugs but less efficiently carbapenems. Due to intrinsic and acquired resistance in M. abscessus and poor clinical outcomes, it is critical to understand the development of antibiotic resistance both within the host and in the setting of outbreaks. We compared serial longitudinally collected M. abscessus subsp. massiliense isolates from the index case of a cystic fibrosis center outbreak and four outbreak-related strains. We found strikingly high imipenem resistance in the later patient isolates, including the outbreak strain (MIC > 512 µg/mL). The phenomenon was recapitulated upon exposure of intracellular bacteria to imipenem. Addition of the β-lactamase inhibitor avibactam abrogated the resistant phenotype. Imipenem resistance was caused by an increase in β-lactamase activity and increased blaMab mRNA level. Concurrent increase in transcription of the preceding ppiA gene indicated upregulation of the entire operon in the resistant strains. Deletion of the porin mspA coincided with the first increase in MIC (from 8 to 32 µg/mL). A frameshift mutation in msp2 responsible for the rough colony morphology and a SNP in ATP-dependent helicase hrpA cooccurred with the second increase in MIC (from 32 to 256 µg/mL). Increased BlaMab expression and enzymatic activity may have been due to altered regulation of the ppiA-blaMab operon by the mutated HrpA alone or in combination with other genes described above. This work supports using carbapenem/β-lactamase inhibitor combinations for treating M. abscessus, particularly imipenem-resistant strains.
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  • 文章类型: Journal Article
    在日本,只有氨苄西林/氯唑西林(ABPC/MCIPC)可作为金黄色葡萄球菌菌血症的基于青霉素的抗葡萄球菌治疗.然而,与双β-内酰胺相关的不良事件的发生率仍然未知.因此,我们调查了菌血症患者双β-内酰胺类药物的不良事件.成人患者(≥18岁)与ABPC治疗菌血症,ABPC+头孢曲松(CTRX),或ABPC/MCIPC进行回顾性分析。这项研究的主要结果是不良事件的发生率,如急性肾损伤,肝功能障碍,和骨髓抑制。双变量分析采用卡方检验和t检验。进行倾向评分(PS)匹配以调整混杂因素。我们包括277ABPC-,57ABPC+CTRX-,43例ABPC/MCIPC治疗患者。在年龄上有显著差异,男性患者数量,qSOFA评分≥2,慢性肾脏病发病率的患者比例,治疗持续时间,机械通风使用,血管加压药的使用,急性肾损伤(AKI)KDIGO等级≥2的患者比例。Further,观察到ABPC和ABPC/MCIPC之间存在显着差异,AKI的风险比为1.83。在PS匹配队列中,与ABPC/MCIPC相关的AKI发生率明显高于与ABPC相关的AKI发生率。ABPC+CTRX可能是安全的,而ABPC/MCIPC的AKI风险较高,可能不适合。
    In Japan, only ampicillin/cloxacillin (ABPC/MCIPC) is available as an anti-staphylococcal penicillin-based treatment for Staphylococcus aureus bacteremia. However, the incidence of adverse events associated with double beta-lactam administration remains unknown. Therefore, we investigated the adverse events of double beta-lactam administration in patients with bacteremia. Adult patients (≥18 years) with bacteremia treated with ABPC, ABPC + ceftriaxone (CTRX), or ABPC/MCIPC were retrospectively analyzed. The primary outcome of this study was the incidence of adverse events such as acute kidney injury, liver dysfunction, and myelosuppression. Chi-square tests and t-tests were used for bivariate analysis. Propensity score (PS) matching was conducted to adjust for confounding factors. We included 277 ABPC-, 57 ABPC + CTRX-, and 43 ABPC/MCIPC-treated patients. Significant differences were noted in age, number of male patients, proportion of patients with qSOFA score ≥2, incidence of chronic kidney disease, treatment duration, mechanical ventilation use, vasopressor use, and proportion of patients with acute kidney injury (AKI) KDIGO grade ≥2. Further, a significant difference was observed between ABPC and ABPC/MCIPC, with a hazard ratio of 1.83 in AKI. In the PS-matched cohort, AKI incidence associated with ABPC/MCIPC was significantly higher than that associated with ABPC. ABPC + CTRX may be safe, whereas ABPC/MCIPC presents a higher risk of AKI and may not be suitable.
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  • 文章类型: Journal Article
    简介:氨基糖苷类具有抗需氧革兰氏阴性菌的活性,通常与β-内酰胺抗生素联合使用。先前评估联合治疗革兰氏阴性菌血症的研究没有显示出明显的益处,然而,在这些研究中,抗菌药物耐药性并不普遍.我们的目标是阐明在革兰氏阴性菌血症患者中在β-内酰胺中添加单剂量氨基糖苷的潜在益处。方法:本研究为单中心,回顾性,队列研究包括18岁或以上的患者,并接受至少24小时的确诊革兰氏阴性菌血症治疗。患者分为两组:在菌血症发作后24小时内接受β-内酰胺单药治疗(n=164)和除单剂量氨基糖苷类(n=79)外还接受β-内酰胺。主要终点是每个提供者文件的感染相关30天死亡率。关键的次要结果包括急性肾损伤(AKI)的发生率和AKI改善的时间。使用卡方或Fisher精确检验分析数据,学生的T测试,和适当的描述性统计数据。结果:单药治疗和联合治疗组13/164vs2/79患者的主要结局(P=0.10)。AKI的发病率(14%vs.12%)和从AKI恢复的时间(90小时;IQR[50-133]vs78小时;IQR[42-128])在组间具有可比性(分别为P=1.00和P=0.73)。结论:在我们的患者人群中,添加单剂量氨基糖苷与降低死亡率或增加从AKI恢复的时间没有显着相关。更大的研究,特别是在更严重的病人人群中,是需要的。
    Introduction: Aminoglycosides possess activity against aerobic gram-negative organisms and are often used in combination with beta-lactam antibiotics. Previous studies evaluating combination therapy in gram-negative bacteremia have not shown clear benefits, however antimicrobial resistance was not prevalent in these studies. Our objective is to elucidate potential benefits of adding a single dose of an aminoglycoside to a beta-lactam in patients with gram-negative bacteremia. Methods: This study was a single-center, retrospective, cohort study including patients 18 years old or older and treated for at least 24 hours for a confirmed gram-negative bacteremia. Patients were divided into two groups: receipt of beta-lactam monotherapy (n = 164) and receipt of a beta-lactam in addition to a single dose of an aminoglycoside (n = 79) within 24 hours of bacteremia onset. The primary endpoint was infection-related 30-day mortality per provider documentation. Key secondary outcomes include incidence of acute kidney injury (AKI) and time to improvement of AKI. Data were analyzed using Chi-square or Fisher\'s exact tests, student\'s T test, and descriptive statistics as appropriate. Results: The primary outcome occurred in 13/164 vs 2/79 patients in the monotherapy and combination groups (P = 0.10). Incidence of AKI (14% vs. 12%) and time to recovery from AKI (90 hours; IQR [50 - 133] vs 78 hours; IQR [42 - 128]) were comparable between groups (P = 1.00 and P = 0.73, respectively). Conclusions: The addition of a single-dose aminoglycoside was not significantly associated with reduced mortality or increased time to recovery from AKI in our patient population. Larger studies, particularly in more severely ill patient populations, are needed.
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  • 文章类型: Journal Article
    背景:缺乏调查皮肤点刺和皮内测试的相对作用的前瞻性研究,血清特异性免疫球蛋白E,以及在诊断报告有β-内酰胺过敏的儿童时延长口服挑战。
    目的:为了确定β-内酰胺过敏儿童的皮肤测试和血清特异性免疫球蛋白E的敏感性和特异性,立即和非立即的历史反应。
    方法:招募400名父母报告的β-内酰胺过敏儿童进入开放标签前瞻性研究。收集详细的过敏史。那些有医学观察和记录的过敏反应史的人,需要肾上腺素,或SCAR被排除。总的来说,380名儿童接受了所有测试方式和直接挑衅测试。每个孩子都接受了至少三年的随访。
    结果:儿童真正的过敏并不常见,8·3%的人对直接挑衅挑战或5天延长的口头挑衅挑战做出了反应。报告头孢菌素过敏或一年内反应的儿童更有可能对直接激发试验作出反应。敏感性,特异性,皮肤试验的阳性预测值为12·5%,直接挑战结果为98·8%和20·0%,4·76%,延长挑战结果为99·0%和25·0%,和6·9%,这两个挑战加在一起为99·0%和40·0%。后续调查显示,5·7%的儿童有轻微的重复反应,2·7%的儿童尽管成功脱标签,仍继续避免罪魁祸首。重新入院的儿童的重新标记率为15%,而重新标记是没有根据的。
    结论:真正的β-内酰胺过敏是罕见的,超过90%的儿童有效地脱标签。皮肤和血清特异性免疫球蛋白E检测不能帮助诊断儿童的β-内酰胺类抗生素过敏,不管病史。延长口腔挑战在确认过敏和增强父母信心方面被证明是有价值的。
    BACKGROUND: There is a scarcity of prospective studies investigating the relative roles of skin prick and intradermal testing, serum-specific Immunoglobulin E, and extended oral challenges in diagnosing children with reported beta-lactam allergies.
    OBJECTIVE: To determine the sensitivity and specificity of skin testing and serum-specific Immunoglobulin E in children with beta-lactam allergies, with immediate and non-immediate historic reactions.
    METHODS: Four hundred children with parent-reported beta-lactam allergies were recruited into an open-label prospective study. Detailed allergy histories were collected. Those with medically observed and documented histories of anaphylaxis, requiring epinephrine, or SCARs were excluded. In total, 380 children underwent all testing modalities and a direct provocation test. Each child was followed up for a minimum of three years.
    RESULTS: True allergy in children was uncommon, 8·3% reacted to the direct provocation challenge or the 5-day extended oral provocation challenge. Children reporting cephalosporin allergy or a reaction within one year were more likely to react to direct provocation testing. The sensitivity, specificity, and positive predictive value of skin testing was 12·5%, 98·8% and 20·0% for direct challenge outcomes, 4·76%, 99·0% and 25·0% for extended challenge outcomes, and 6·9%, 99·0% and 40·0% for both challenges combined. Follow-up investigations revealed that 5·7% of children had a mild repeat reaction and 2·7% continued to avoid the culprit despite successful delabeling. The relabeling rate for children readmitted to hospital was 15% with the relabeing being unfounded.
    CONCLUSIONS: Genuine beta-lactam allergies were rare, with over 90% of children effectively delabeled. Skin and serum-specific Immunoglobulin E testing did not aid the diagnosis of beta-lactam antibiotic allergy in children, regardless of medical history. Extended oral challenges proved valuable in confirming allergies and boosted parental confidence.
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  • 文章类型: Journal Article
    目的:本研究的目的是确定为儿科患者提供护理的医院中与β-内酰胺/β-内酰胺酶抑制剂(BL/BLI)剂量描述相关的现行做法,并确定标准化BL/BLI剂量交流和订购基于药物的整体策略的感知含义。
    方法:通过4个儿科药房和感染性疾病列表服务器分发了27项电子调查。调查问题与医院人口统计有关,给药沟通实践,BL/BLI订购和标签实践,安全使用BL/BLI的障碍,以及潜在的标准化对整体药物传播战略的影响。采用SPSS进行定量分析,采用MAXQDA进行定性分析。
    结果:在排除不完整的响应并对同一机构的多个响应进行协调后,对总共140个独特的调查响应进行了分析。总的来说,56.2%的机构为儿科患者按BL部分订购BL/BLIs,22%的机构按BL部分订购成人患者。大约一半(51.8%)的受访者认为,将药物标准化至总药物会对他们的机构产生负面影响;对潜在影响的看法因机构的订购策略而异。
    结论:BL/BLIs的沟通和订购在机构之间以及儿科和成人患者之间不一致。在短期内,人们认为标准化会加剧体制挑战。
    OBJECTIVE: The purpose of this study was to define current practices related to beta-lactam/beta-lactamase inhibitor (BL/BLI) dose descriptions in hospitals that provide care for pediatric patients and to identify perceived implications of standardizing BL/BLI dose communication and ordering to a total drug-based strategy.
    METHODS: A 27-item electronic survey was distributed via 4 pediatric pharmacy and infectious diseases listservs. Survey questions pertained to hospital demographics, dosing communication practices, BL/BLI ordering and labeling practices, obstacles to safe BL/BLI use, and the effects of potential standardization to a total drug communication strategy. SPSS was used for quantitative analysis and MAXQDA was used for qualitative analysis.
    RESULTS: A total of 140 unique survey responses were analyzed after exclusion of incomplete responses and reconciliation of multiple responses from the same institution. Overall, 56.2% of institutions order BL/BLIs by BL component for pediatric patients, and 22% of institutions order by BL component for adult patients. Approximately half (51.8%) of respondents felt that standardizing to total drug would have a negative effect at their institution; perception of potential effect varied based on the institution\'s ordering strategy.
    CONCLUSIONS: Communication and ordering of BL/BLIs is inconsistent across institutions and between pediatric and adult patients. In the short term, the perception is that standardization would compound institutional challenges.
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  • 文章类型: Journal Article
    鉴于与青霉素过敏标签相关的负面影响,更广泛的青霉素过敏剥离措施是非常可取的,但由于美国过敏专家短缺而受到阻碍。为了解决我们工厂的这个问题,传染病科引入了一项质量改进计划,以评估和删除住院退伍军人的过敏标签。
    在2022年11月15日至2023年12月15日之间,我们确定了具有青霉素过敏标签的住院患者。我们随后采访了符合条件的候选人,以对青霉素过敏风险进行分层,并试图通过图表审查直接删除过敏标签。住院患者口服阿莫西林挑战或门诊社区护理过敏转诊。去标签结果,随后的青霉素类处方,并在成功去除过敏标签后追踪重新标记。
    我们筛选了272名退伍军人,其中154人接受了这次干预的采访。共有53例患者被去标签:26例直接,23口服阿莫西林攻击后,和4在门诊过敏转诊后。在被去标签的病人中,25人随后接受了青霉素类处方。住院患者口服阿莫西林挑战后无不良反应发生。具有低风险青霉素过敏史的患者如果患有与传染病相关的疾病,则更有可能接受挑战。研究期间仅发生1次不适当的重新标记事件,随后被纠正。
    一项由传染病提供者主导的倡议导致超过三分之一的住院患者使用直接去除或口服阿莫西林激发进行评估,从而消除了青霉素过敏标签。针对因感染入院的患者的努力尤其成功。
    UNASSIGNED: Given the negative consequences associated with a penicillin allergy label, broader penicillin allergy delabeling initiatives are highly desirable but hindered by the shortage of allergists in the United States. To address this problem at our facility, the infectious diseases section introduced a quality improvement initiative to evaluate and remove allergy labels among inpatient veterans.
    UNASSIGNED: Between 15 November 2022 and 15 December 2023, we identified inpatients with a penicillin allergy label. We subsequently interviewed eligible candidates to stratify penicillin allergy risk and attempt to remove the allergy label directly via chart review, following inpatient oral amoxicillin challenge or outpatient community care allergy referral. Delabeling outcomes, subsequent penicillin-class prescriptions, and relabeling were tracked after successful allergy label removal.
    UNASSIGNED: We screened 272 veterans, of whom 154 were interviewed for this intervention. A total of 53 patients were delabeled: 26 directly, 23 following oral amoxicillin challenge, and 4 following outpatient allergy referrals. Of the patients who were delabeled, 25 received subsequent penicillin-class prescriptions. No adverse reactions occurred following inpatient oral amoxicillin challenges. Patients with a low-risk penicillin allergy history were more likely to undergo a challenge if admitted with an infectious diseases-related condition. Only 1 inappropriate relabeling event occurred during the study period, which was subsequently corrected.
    UNASSIGNED: An infectious diseases provider-led initiative resulted in penicillin allergy label removal in more than one third of inpatients evaluated using direct removal or oral amoxicillin challenge. Efforts focused on patients who had been admitted for infections were particularly successful.
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  • 文章类型: Journal Article
    β-内酰胺是儿童中使用最广泛的抗生素。它们的最佳剂量对于最大限度地发挥功效至关重要,同时将毒性风险和抗菌素耐药性的进一步出现降至最低。然而,大多数β-内酰胺是在法规变更强制进行儿童药代动力学研究之前开发并获得许可的.因此,儿科给药实践不协调,目前标签外使用仍然很普遍.
    儿科学中的β-内酰胺药代动力学和剂量优化策略,包括固定剂量方案,治疗药物监测,和模型知情的精确给药进行审查。
    标准儿科剂量可导致特定患者亚群的亚治疗暴露和非目标达成(新生儿,危重病儿童,例如)。这些患者可以从更个性化的剂量优化方法中获益,除了基于体重的相对简单的剂量适应,年龄或肾功能。在这种情况下,治疗药物监测(TDM)和模型信息精确给药(MIPD)是特别有前途的途径。实施的障碍包括由于缺乏随机临床试验,缺乏强有力的临床获益证据,用于监测浓度的标准化测定法,或有足够的肾功能标志。迫切需要开发精准医学工具,以在脆弱的儿科亚群中进行个性化治疗。
    UNASSIGNED: β-Lactams are the most widely used antibiotics in children. Their optimal dosing is essential to maximize their efficacy, while minimizing the risk for toxicity and the further emergence of antimicrobial resistance. However, most β-lactams were developed and licensed long before regulatory changes mandated pharmacokinetic studies in children. As a result, pediatric dosing practices are poorly harmonized and off-label use remains common today.
    UNASSIGNED: β-Lactam pharmacokinetics and dose optimization strategies in pediatrics, including fixed dose regimens, therapeutic drug monitoring, and model-informed precision dosing are reviewed.
    UNASSIGNED: Standard pediatric doses can result in subtherapeutic exposure and non-target attainment for specific patient subpopulations (neonates, critically ill children, e.g.). Such patients could benefit greatly from more individualized approaches to dose optimization, beyond a relatively simple dose adaptation based on weight, age, or renal function. In this context, Therapeutic Drug Monitoring (TDM) and Model-Informed Precision Dosing (MIPD) emerge as particularly promising avenues. Obstacles to their implementation include the lack of strong evidence of clinical benefit due to the paucity of randomized clinical trials, of standardized assays for monitoring concentrations, or of adequate markers for renal function. The development of precision medicine tools is urgently needed to individualize therapy in vulnerable pediatric subpopulations.
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  • 文章类型: Journal Article
    当细菌与抗生素的混合物一起孵育时,当前的抗生素谱不能辨别特定抗生素的特定作用。为了证明这项任务是可以实现的,大肠杆菌菌株用环丙沙星处理45分钟,固定在载玻片上并用SYBRGold染色。在易感菌株中,在MIC附近,类核苷相对表面开始降低,随着剂量的增加而逐渐浓缩。收缩水平与DNA片段化程度相关。环丙沙星耐药杆菌无变化。此外,将大肠杆菌菌株与氨苄青霉素一起孵育45分钟并进行类似处理。氨苄青霉素敏感菌株显示细胞间DNA片段随剂量增加,与抗性菌株不同。与两种抗生素共同孵育显示,氨苄青霉素并未改变环丙沙星的类核苷缩合作用,而喹诺酮部分降低了氨苄青霉素诱导的DNA片段的背景。60个临床分离株,对每种抗生素的敏感性-耐药性的不同组合,与环丙沙星和氨苄青霉素敏感性的EUCAST断点共孵育。形态学分析在60分钟内正确分类每种抗生素的所有菌株,证明了对喹诺酮和β-内酰胺混合物的可行的独立评估。快速表型测定可以缩短孵育时间和当前评估所需的必要微生物质量。
    Current antibiograms cannot discern the particular effect of a specific antibiotic when the bacteria are incubated with a mixture of antibiotics. To prove that this task is achievable, Escherichia coli strains were treated with ciprofloxacin for 45 min, immobilized on a slide and stained with SYBR Gold. In susceptible strains, the nucleoid relative surface started to decrease near the MIC, being progressively condensed as the dose increased. The shrinkage level correlated with the DNA fragmentation degree. Ciprofloxacin-resistant bacilli showed no change. Additionally, E. coli strains were incubated with ampicillin for 45 min and processed similarly. The ampicillin-susceptible strain revealed intercellular DNA fragments that increased with dose, unlike the resistant strain. Co-incubation with both antibiotics revealed that ampicillin did not modify the nucleoid condensation effect of ciprofloxacin, whereas the quinolone partially decreased the background of DNA fragments induced by ampicillin. Sixty clinical isolates, with different combinations of susceptibility-resistance to each antibiotic, were co-incubated with the EUCAST breakpoints of susceptibility of ciprofloxacin and ampicillin. The morphological assay correctly categorized all the strains for each antibiotic in 60 min, demonstrating the feasible independent evaluation of a mixture of quinolone and beta-lactam. The rapid phenotypic assay may shorten the incubation times and necessary microbial mass currently required for evaluation.
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  • 文章类型: Journal Article
    硫霉素是一种碳青霉烯类抗生素,对革兰氏阴性和革兰氏阳性细菌具有有效的活性。由于其具有良好的活性,但缺乏化学稳定性,硫霉素作为新的合成抗生素支架的灵感。在这项研究中,我们报道了硫霉素的九步对映选择性形式合成。我们的路线采用不对称还原,由NaBH4和D-酒石酸启用,然后进行一系列非对映选择性反应,以获得硫霉素的关键氮杂环丁酮前体。这种氮杂环丁酮前体可以用作中间体,以进一步开发和扩展下一代β-内酰胺抗生素支架的范围。
    Thienamycin is a carbapenem antibiotic with potent activity against gram-negative and gram-positive bacteria. Due to its promising activity but lack of chemical stability, thienamycin serves as inspiration for new synthetic antibiotic scaffolds. In this study, we report a nine-step enantioselective formal synthesis of thienamycin. Our route utilizes an asymmetric reduction, enabled by NaBH4 and D-tartaric acid, followed by a series of diastereoselective reactions to access the key azetidinone precursor to thienamycin. This azetidinone precursor could be used as an intermediate to further develop and expand the scope of next-generation beta-lactam antibiotic scaffolds.
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  • 文章类型: Journal Article
    作为青藏高原上分布最广的食腐鸟类,喜马拉雅秃鹰(Gypshimalayensis)以各种野生和家畜的尸体为食,面对病原体和抗生素的双重选择压力,是监测抗生素抗性基因(ARGs)的合适生物前哨物种。这项研究使用宏基因组测序来比较研究野生和圈养喜马拉雅秃鹰的ARG和移动遗传元件(MGEs)。总的来说,喜马拉雅秃鹰的抗性组包含对20种ARG类型具有抗性的414种ARG亚型,丰度范围从0.01到1,493.60ppm。最丰富的耐药类型是β-内酰胺(175个亚型),其次是68个亚型的多药耐药基因。与动物园组相比,在野生组中观察到大环内酯-lincosamide-streptogramin(MLS)抗性基因的丰度降低。预计喜马拉雅秃鹰中共有75个属(5个门)的细菌是ARGs的宿主,还分析了临床(102个ARGs)和高危ARGs(35个I级ARGs和56个II级ARGs)。在这些ARG中,22个临床ARGs,九个等级IARG亚型,发现两组之间有16种RankIIARG亚型存在显着差异。在喜马拉雅秃鹰中发现了五种类型的MGE(128种亚型)。发现质粒(62个亚型)和转座酶(44个亚型)是主要的MGE类型。外排泵和抗生素失活是喜马拉雅秃鹰ARGs的主要耐药机制。与圈养的喜马拉雅秃鹰相比,野生喜马拉雅秃鹰的细胞保护丰度降低。Procrustes分析和共生网络分析揭示了肠道微生物之间不同的相关性模式,ARGs,以及野生和圈养的喜马拉雅秃鹰中的MGE。这项研究是描述喜马拉雅秃鹰肠道中ARGs特征的第一步,并强调需要更加注意清除鸟类。
    As the most widely distributed scavenger birds on the Qinghai-Tibetan Plateau, Himalayan vultures (Gyps himalayensis) feed on the carcasses of various wild and domestic animals, facing the dual selection pressure of pathogens and antibiotics and are suitable biological sentinel species for monitoring antibiotic resistance genes (ARGs). This study used metagenomic sequencing to comparatively investigate the ARGs and mobile genetic elements (MGEs) of wild and captive Himalayan vultures. Overall, the resistome of Himalayan vultures contained 414 ARG subtypes resistant to 20 ARG types, with abundances ranging from 0.01 to 1,493.60 ppm. The most abundant resistance type was beta-lactam (175 subtypes), followed by multidrug resistance genes with 68 subtypes. Decreases in the abundance of macrolide-lincosamide-streptogramin (MLS) resistance genes were observed in the wild group compared with the zoo group. A total of 75 genera (five phyla) of bacteria were predicted to be the hosts of ARGs in Himalayan vultures, and the clinical (102 ARGs) and high-risk ARGs (35 Rank I and 56 Rank II ARGs) were also analyzed. Among these ARGs, twenty-two clinical ARGs, nine Rank I ARG subtypes, sixteen Rank II ARG subtypes were found to differ significantly between the two groups. Five types of MGEs (128 subtypes) were found in Himalayan vultures. Plasmids (62 subtypes) and transposases (44 subtypes) were found to be the main MGE types. Efflux pump and antibiotic deactivation were the main resistance mechanisms of ARGs in Himalayan vultures. Decreases in the abundance of cellular protection were identified in wild Himalayan vultures compared with the captive Himalayan vultures. Procrustes analysis and the co-occurrence networks analysis revealed different patterns of correlations among gut microbes, ARGs, and MGEs in wild and captive Himalayan vultures. This study is the first step in describing the characterization of the ARGs in the gut of Himalayan vultures and highlights the need to pay more attention to scavenging birds.
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