Bayesian spatiotemporal model

  • 文章类型: Journal Article
    印度先前的研究已经确定了城市化,人口流动和人口统计是与较高地区水平COVID-19发病率相关的关键变量。然而,印度农村和城市地区流动模式的时空动态,与COVID-19传输的其他驱动器一起,没有得到充分的调查。我们使用从Google获得的汇总和匿名的每周人类运动数据集,在两次大流行浪潮中探索了印度境内的旅行网络。与2020年初8周时间段的平均基线流动性相比,大流行之前和期间流动性的量化变化。我们在R中的集成嵌套拉普拉斯近似(INLA)软件包中拟合贝叶斯时空分层模型和分布式滞后非线性模型(DLNM),以检查城市中COVID-19传播驱动因素的滞后响应关联,郊区,郊区和印度农村地区在2020-2021年的两次大流行浪潮中。模型结果表明,在Delta传播波期间,流动性恢复到大流行前水平的99%与COVID-19传播的相对风险增加有关。这增加了流动性,再加上公共干预政策的严格性降低和Delta变体的出现,是2021年4月印度COVID-19传播高峰的主要贡献者。在印度的两次大流行浪潮中,减少人类的流动性,更严格的干预措施,和气候因素(温度和降水)对COVID-19传播的Rt有2周的滞后响应影响,随着城市中观察到的COVID-19传播驱动因素的变化,农村和郊区。随着全球气候的变化,新发感染和疾病爆发的可能性增加,提供一个框架来理解感染传播的时空驱动因素的滞后影响对于告知干预措施至关重要。
    Previous research in India has identified urbanisation, human mobility and population demographics as key variables associated with higher district level COVID-19 incidence. However, the spatiotemporal dynamics of mobility patterns in rural and urban areas in India, in conjunction with other drivers of COVID-19 transmission, have not been fully investigated. We explored travel networks within India during two pandemic waves using aggregated and anonymized weekly human movement datasets obtained from Google, and quantified changes in mobility before and during the pandemic compared with the mean baseline mobility for the 8-week time period at the beginning of 2020. We fit Bayesian spatiotemporal hierarchical models coupled with distributed lag non-linear models (DLNM) within the integrated nested Laplace approximate (INLA) package in R to examine the lag-response associations of drivers of COVID-19 transmission in urban, suburban, and rural districts in India during two pandemic waves in 2020-2021. Model results demonstrate that recovery of mobility to 99% that of pre-pandemic levels was associated with an increase in relative risk of COVID-19 transmission during the Delta wave of transmission. This increased mobility, coupled with reduced stringency in public intervention policy and the emergence of the Delta variant, were the main contributors to the high COVID-19 transmission peak in India in April 2021. During both pandemic waves in India, reduction in human mobility, higher stringency of interventions, and climate factors (temperature and precipitation) had 2-week lag-response impacts on the R t of COVID-19 transmission, with variations in drivers of COVID-19 transmission observed across urban, rural and suburban areas. With the increased likelihood of emergent novel infections and disease outbreaks under a changing global climate, providing a framework for understanding the lagged impact of spatiotemporal drivers of infection transmission will be crucial for informing interventions.
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  • 文章类型: Journal Article
    手,脚,自中国首次爆发以来,口蹄疫(HFMD)一直是严重的公共卫生威胁。分析手足口病的省级时空分布并绘制中国大陆的相对风险图,将有助于确定高危省份和感染暴发的时期,以用于制定预防和控制该疾病的新优先领域。此外,我们的研究调查了空气污染对全国手足口病的影响,到目前为止,很少有研究这样做。
    收集了各省每月手足口病感染人数的数据,空气污染,气象变量,中国大陆2014年至2017年的社会经济变量。我们使用空间自相关来确定手足口病发病率的总体分布。分析了手足口病的时空格局,风险图是使用贝叶斯时空模型开发的,评估潜在影响因素对手足口病的影响。
    在我们的研究中,从2014年到2017年,中国大陆所有省份的手足口病年发病率为每10万人138.80至203.15,年平均发病率为165.86。中国31个省份手足口病的时间风险具有周期性和季节性特征。从2014年到2017年,南部和东部省份的空间相对风险最高(RR>3)。各省手足口病发病风险(湖南,湖北,和重庆)位于中国中部,随着时间的推移而增加。在气象变量中,除了平均两分钟风速(RR0.6878;95%CI0.5841,0.8042),所有其他变量均为手足口病的危险因素.高人均GDP(RR0.9922;95%CI0.9841,0.9999)是手足口病的保护因素。出生率越高(RR1.0657;95%CI1.0185,1.1150),手足口病的风险越高。每1,000人的卫生工作者(RR1.2010;95%CI1.0443,1.3771)与手足口病呈正相关。
    从2014年到2017年,中部省份(湖南,湖北,和重庆)逐渐成为手足口病的高发地区。手足口病风险的时空模式可能部分归因于气象和社会经济因素。中部省份手足口病的流行需要引起重视,因为那里的预防控制工作应该加强。
    Hand, foot, and mouth disease (HFMD) has remained a serious public health threat since its first outbreak in China. Analyzing the province-level spatiotemporal distribution of HFMD and mapping the relative risk in mainland China will help determine high-risk provinces and periods of infection outbreaks for use in formulating new priority areas for prevention and control of this disease. Furthermore, our study examined the effect of air pollution on HFMD nationwide, which few studies have done thus far.
    Data were collected on the number of provincial monthly HFMD infections, air pollution, meteorological variables, and socioeconomic variables from 2014 to 2017 in mainland China. We used spatial autocorrelation to determine the aggregate distribution of HFMD incidence. Spatiotemporal patterns of HFMD were analyzed, risk maps were developed using the Bayesian spatiotemporal model, and the impact of potential influencing factors on HFMD was assessed.
    In our study, from 2014 to 2017, the HFMD annual incidence rate in all provinces of mainland China ranged from 138.80 to 203.15 per 100,000 people, with an average annual incidence rate of 165.86. The temporal risk of HFMD for 31 Chinese provinces exhibited cyclical and seasonal characteristics. The southern and eastern provinces had the highest spatial relative risk (RR > 3) from 2014 to 2017. The HFMD incidence risk in provinces (Hunan, Hubei, and Chongqing) located in central China increased over time. Among the meteorological variables, except for the mean two-minute wind speed (RR 0.6878; 95% CI 0.5841, 0.8042), all other variables were risk factors for HFMD. High GDP per capita (RR 0.9922; 95% CI 0.9841, 0.9999) was a protective factor against HFMD. The higher the birth rate was (RR 1.0657; 95% CI 1.0185, 1.1150), the higher the risk of HFMD. Health workers per 1,000 people (RR 1.2010; 95% CI 1.0443, 1.3771) was positively correlated with HFMD.
    From 2014 to 2017, the central provinces (Hunan, Hubei, and Chongqing) gradually became high-risk regions for HFMD. The spatiotemporal pattern of HFMD risk may be partially attributed to meteorological and socioeconomic factors. The prevalence of HFMD in the central provinces requires attention, as prevention control efforts should be strengthened there.
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  • 文章类型: Journal Article
    布鲁氏菌病是由布鲁氏菌引起的一种高度传染性的人畜共患和全身性传染病,严重影响全球公共卫生和社会经济发展。特别是,在中国,不断积累的生态环境变化和农业集约化增加了人类布鲁氏菌病(HB)感染的扩展。作为毗邻内蒙古的传统畜牧业区,中国西北部大同市的特点是乙型肝炎发病率高,显示近年来HB感染风险模式的明显变化。在这项研究中,我们建立了贝叶斯时空模型,以检测2005年至2020年大同市乙型肝炎发生的高风险集群的转移。采用地理和时间加权回归和地理探测器来研究多个潜在风险因素的协同驱动效应。结果证实,大同地区HB从东部到西部和南部有明显的动态扩展。HB的分布与城市化水平呈负相关,经济发展,人口密度,温度,降水,和风速,虽然与归一化差异植被指数呈正相关,和草地/农田覆盖区。尤其是,当地畜牧业及相关产业对HB的时空分布产生了很大影响。这项工作加强了对HB空间异质性如何由环境因素驱动的理解,通过该方法可以为决策者制定和实施疾病控制策略和政策以防止乙型肝炎进一步传播提供有用的见解。
    Brucellosis is a highly contagious zoonotic and systemic infectious disease caused by Brucella, which seriously affects public health and socioeconomic development worldwide. Particularly, in China accumulating eco-environmental changes and agricultural intensification have increased the expansion of human brucellosis (HB) infection. As a traditional animal husbandry area adjacent to Inner Mongolia, Datong City in northwestern China is characterized by a high HB incidence, demonstrating obvious variations in the risk pattern of HB infection in recent years. In this study, we built Bayesian spatiotemporal models to detect the transfer of high-risk clusters of HB occurrence in Datong from 2005 to 2020. Geographically and Temporally Weighted Regression and GeoDetector were employed to investigate the synergistic driving effects of multiple potential risk factors. Results confirmed an evident dynamic expansion of HB from the east to the west and south in Datong. The distribution of HB showed a negative correlation with urbanization level, economic development, population density, temperature, precipitation, and wind speed, while a positive correlation with the normalized difference vegetation index, and grassland/cropland cover areas. Especially, the local animal husbandry and related industries imposed a large influence on the spatiotemporal distribution of HB. This work strengthens the understanding of how HB spatial heterogeneity is driven by environmental factors, through which helpful insights can be provided for decision-makers to formulate and implement disease control strategies and policies for preventing the further spread of HB.
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  • 文章类型: Journal Article
    背景:手,由多种肠道病毒引起的手足口病(HFMD)仍然是我国的重大公共卫生问题。以往的研究发现,社会因素可能导致气象因素与手足口病的关系模式不一致,但是结论不一致。社会因素对气象与手足口病之间关联的影响尚不清楚。目的分析社会因素是否影响气象因素对四川省手足口病的影响。
    方法:我们收集了关于手足口病的每日数据,2011-2017年四川省气象因素和社会因素。首先,我们采用贝叶斯时空模型结合分布滞后非线性模型,评估气象因素与手足口病之间的暴露-滞后-反应关系.第二,通过在上述模型中构建气象因素和社会因素的相互作用,评价不同社会因素水平下相对危险度(RR)的变化。
    结果:平均温度的累积暴露曲线,相对湿度,手足口病的形状像倒置的“V”形和“U”形。随着平均气温的升高,RR在19°C时增加并达到峰值(RR1.020[95%置信区间1.004-1.050])。城市化率,人均国内生产总值(GDP),人口密度,出生率,卫生保健中心的床位数量和幼儿园的数量与相对湿度相互作用。随着社会因素的增加,相对湿度与手足口病的相关曲线从“S”形变为“U”形。
    结论:相对湿度和平均温度在一定范围内增加了手足口病的风险,和社会因素增强了高相对湿度的影响。这些结果可以提供有关环境因素在手足口病中的综合作用的见解,并为区域干预提供有用的信息。
    Hand, foot and mouth disease (HFMD) caused by a variety of enteroviruses remains a major public health problem in China. Previous studies have found that social factors may contribute to the inconsistency of the relationship patterns between meteorological factors and HFMD, but the conclusions are inconsistent. The influence of social factors on the association between meteorology and HFMD is still less well understood. We aimed to analyze whether social factors affected the effect of meteorological factors on HFMD in Sichuan Province.
    We collected daily data on HFMD, meteorological factors and social factors in Sichuan Province from 2011 to 2017. First, we used a Bayesian spatiotemporal model combined with a distributed lag nonlinear model to evaluate the exposure-lag-response association between meteorological factors and HFMD. Second, by constructing the interaction of meteorological factors and social factors in the above model, the changes in the relative risk (RR) under different levels of social factors were evaluated.
    The cumulative exposure curves for average temperature, relative humidity, and HFMD were shaped like an inverted \"V\" and a \"U\" shape. As the average temperature increased, the RR increased and peaked at 19 °C (RR 1.020 [95% confidence interval CI 1.004-1.050]). The urbanization rate, per capita gross domestic product (GDP), population density, birth rate, number of beds in health care centers and number of kindergartens interacted with relative humidity. With the increase in social factors, the correlation curve between relative humidity and HFMD changed from an \"S\" shape to a \"U\" shape.
    Relative humidity and average temperature increased the risk of HFMD within a certain range, and social factors enhanced the impact of high relative humidity. These results could provide insights into the combined role of environmental factors in HFMD and useful information for regional interventions.
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  • 文章类型: Journal Article
    监测阿片类药物过量死亡率的时空过程是关键的公共卫生决定因素。尽管以前的研究探索了在COVID-19大流行期间呆在家里的任务后,与毒品相关的死亡人数的演变,关于缓解措施对过量死亡的时空动态知之甚少。这项研究的目的是描述芝加哥市实施COVID-19封锁后5个月内过量死亡相对风险的空间和时间动态,IL.使用贝叶斯时空模型来产生与阿片类药物相关的过量死亡的后验风险估计和超额概率,以控制地区水平的剥夺和居家任务的度量。我们发现,在大流行的最初几个月,地区水平的时间风险和药物过量死亡率的不平等显着增加。我们进一步发现,从第一到第四五分之一的区域水平剥夺的变化使药物过量风险的相对风险增加了44.5%。衡量每个人口普查区块组中呆在家里的比例的社会距离指数与药物过量死亡率无关。最后,我们强调了在全球大流行期间实施有效和安全的减少伤害战略的重要性。
    Monitoring the spatial and temporal course of opioid-related drug overdose mortality is a key public health determinant. Despite previous studies exploring the evolution of drug-related fatalities following the stay-at-home mandates during the COVID-19 pandemic, little is known about the spatiotemporal dynamics that mitigation efforts had on overdose deaths. The purpose of this study was to describe the spatial and temporal dynamics of overdose death relative risk using a 4-week interval over a span of 5 months following the implementation of the COVID-19 lockdown in the city of Chicago, IL. A Bayesian space-time model was used to produce posterior risk estimates and exceedance probabilities of opioid-related overdose deaths controlling for measures of area-level deprivation and stay-at-home mandates. We found that area-level temporal risk and inequalities in drug overdose mortality increased significantly in the initial months of the pandemic. We further found that a change in the area-level deprivation from the first to the fourth quintile increased the relative risk of a drug overdose risk by 44.5%. The social distancing index measuring the proportion of persons who stayed at home in each census block group was not associated with drug overdose mortality. We conclude by highlighting the importance of contextualizing the spatial and temporal risk in overdose mortality for implementing effective and safe harm reduction strategies during a global pandemic.
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  • 文章类型: Journal Article
    在高收入国家,日本的肥胖率很低,但人们对体重指数(BMI)的国家以下趋势和变化知之甚少,主要是由于缺乏来自州代表性样本的数据。我们旨在使用时空模型研究从1970年代后期开始日本地级成人BMI的长期趋势和分布。
    我们从1975-2018年进行的44项年度国家健康和营养调查(NHNS)中获得了233,988名男性和261,086名20-79岁女性的横截面数据。我们应用贝叶斯时空模型,按47个县中的每个县的20岁年龄组和性别估算了年龄标准化和年龄特定的平均BMI的年度时间序列。我们使用集中度指数评估了各州BMI的社会经济不平等,根据人口密度。
    在男人中,年龄标准化的县平均BMI范围为21.7kg/m2(95%可信区间,21.6-21.9)至1975年的23.1kg/m2(22.9-23.4),2018年从23.5kg/m2(23.3-23.7)至24.8kg/m2(24.6-25.1)。在女性中,年龄标准化地区平均BMI在1975年为22.0kg/m2(21.9~22.2)~23.4kg/m2(23.2~23.6),在2018年为21.7kg/m2(21.6~22.0)~23.5kg/m2(23.2~23.8).在研究期间的大部分时间里,最南端的州平均BMI最高,其次是东北各州。平均BMI的增长在西南各州最大,随着时间的推移,它赶上了东北各州。浓度指数为负,表明人口较少的县的BMI较高。女性的浓度指数绝对值大于男性,并且随着时间的推移而增加。
    各州的成年人平均BMI存在差异,地理分布随时间变化。需要进一步的国家和地方努力来解决平均BMI上升的趋势,特别是在农村地区的男性中,妇女之间的社会经济不平等。贝叶斯分层建模可用于通过整合NHNS地级市的小型调查样本来重建平均BMI的长期时空趋势。
    Among high-income countries, Japan has a low prevalence of obesity, but little is understood about subnational trends and variations in body mass index (BMI), largely owing to the lack of data from representative samples of prefectures. We aimed to examine long-term trends and distributions of adult BMI at the prefecture level in Japan from the late 1970s using a spatiotemporal model.
    We obtained cross-sectional data for 233,988 men and 261,086 women aged 20-79 years from the 44 annual National Health and Nutrition Surveys (NHNS) conducted during 1975-2018. We applied a Bayesian spatiotemporal model to estimate the annual time series of age-standardized and age-specific mean BMI by 20-year age group and sex for each of the 47 prefectures. We assessed socioeconomic inequalities in BMI across prefectures using the concentration index, according to population density.
    In men, the age-standardized prefectural mean BMI ranged from 21.7 kg/m2 (95% credible interval, 21.6-21.9) to 23.1 kg/m2 (22.9-23.4) in 1975 and from 23.5 kg/m2 (23.3-23.7) to 24.8 kg/m2 (24.6-25.1) in 2018. In women, the age-standardized prefectural mean BMI ranged from 22.0 kg/m2 (21.9-22.2) to 23.4 kg/m2 (23.2-23.6) in 1975 and from 21.7 kg/m2 (21.6-22.0) to 23.5 kg/m2 (23.2-23.8) in 2018. Mean BMI was highest in the southernmost prefecture for most of the study period, followed by northeast prefectures. The increase in mean BMI was largest in southwest prefectures, which caught up with northeast prefectures over time. The concentration index was negative, indicating higher BMI in less-populated prefectures. Absolute values of the concentration index were greater in women than in men and increased over time.
    There were variations in adult mean BMI across prefectures, and geographic distributions changed over time. Further national and local efforts are needed to address the rising trend in mean BMI, particularly among men in rural prefectures, and socioeconomic inequalities among women. Bayesian hierarchical modeling is useful for reconstructing long-term spatiotemporal trends of mean BMI by integrating small-sized survey samples at the prefecture level in the NHNS.
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  • 文章类型: Journal Article
    Facing severe PM2.5 pollution, China has adopted a series of clean air policies since 2013, but PM2.5 concentrations in China remain serious. Weighing both sustainable development and environmental protection, the Environmental Protection Tax Law was implemented in 2018 in China. This research employed a Bayesian space-time model to identify the impacts of the environmental protection tax on PM2.5 pollution (IEPTPM2.5P) at the provincial level in 2018 in China, combining remotely sensed and in-situ monitoring data. Then the influence factors of the IEPTPM2.5P was investigated using a Bayesian LASSO regression model. Results indicate that the IEPTPM2.5P resulted in a decreasing trend of annual PM2.5 concentrations in 31 provinces. The spatial pattern of the IEPTPM2.5P presented a distinct geographical feature. The highest five IEPTPM2.5P occurred in Beijing, Tianjin, Shanghai, Shandong, and Hebei, and the corresponding values were -1.81, -1.79, -1.52, -1.51, and -1.47 μg/m3 per year, respectively. Tourism output value associated negatively with the IEPTPM2.5P, and the other five variables associated positively with the IEPTPM2.5P. The urbanisation rate and relief amplitude were the top two influencing factors, with contributions of 36.3% and 19.3%, respectively. The IEPTPM2.5P increased 0.0141 μg/m3 per year (95% credibility interval (CI): 0.0013, 0.0259) if the urbanisation rate increased one percentage point. The influencing contributions and magnitudes of the tax rate for air pollutants and the environmental tax revenue are 9.6% and 12.1%, 0.0016 (95% CI:-0.0038, 0.0076) and 0.0108 (95% CI:-0.0188, 0.0412) μg/m3 per year, respectively.
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  • 文章类型: Journal Article
    Child maltreatment is a serious public health problem. Previous research demonstrates that child maltreatment clusters in low-income, racially homogenous neighborhoods. Little is known, however, about the structural correlates of spatial risk in small areas such as census tracts. Here we present additional information regarding the data and methods used in the recent article published in Child Abuse & Neglect entitled \"Variability and stability in child maltreatment risk across time and space and its association with neighborhood social & housing vulnerability in New Mexico: A Bayesian space-time model\" [1]. The present dataset merges child maltreatment data from the New Mexico Department of Public Health with multiple sources of publicly available data to create a novel public health analysis. Bayesian spatio-temporal modeling techniques were used to map the relative risk of substantiated child maltreatment across census tracts in the state, and to elucidate spatial and temporal heterogeneity in risk. The data was initially collected by the New Mexico Children, Youth and Families Department, the state organization that suspected child abuse and neglect cases are reported to and the organization that then substantiates these cases. The data were then sent to the New Mexico Community Data Collaborative, a data analytic organization under the umbrella of the New Mexico Department of Health. The point file consisting of home addresses of substantiated cases of child abuse was then aggregated by census tract, mapped for the entire state of New Mexico and made available to the public for research and analysis by different public health organizations and researchers (including the present researchers). The very purpose of making the data available to the public was to allow deeper investigations into trends and associations with other social determinants of health. This analysis demonstrates the public health importance of data sharing and accessibility.
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  • 文章类型: Journal Article
    OBJECTIVE: To explore the risk factors of pulmonary tuberculosis incidence in Wenchuan earthquake-stricken area during a nine-year period of time.
    METHODS: The incidence and socioeconomic indicators in the 181 counties of Sichuan province from 2004 to 2012 were collected, multilevel extra-Poisson model was performed for variable screening, and Bayesian spatiotemporal models were fitted.
    RESULTS: The morbidity showed a downward time trend from 2004 to 2012. The spatiotemporal interaction model was applied with the smallest deviance information criterion. The risk factors included: county latitude (0.949, 95%CI 0.765 to 1.098), float proportion (0.368, 95%CI 0.354 to 0.380), per capita GDP (-0.225, 95%CI -0.235 to -0.216), population density (0.072, 95%CI 0.041 to 0.105), and minority inhabited area (0.302, 95%CI 0.241 to 0.372). The variation of posterior median and Bayesian credibility interval was small, and the spatiotemporal patterns were similar among different periods.
    CONCLUSIONS: The incidence presented a smooth curve without bursting after the earthquake during 2004 to 2012, and with a tendency of decreasing from north to south in Sichuan province; PTB countermeasures should be focused on the migrating population and in the minority inhabited and economic underdeveloped regions. Geographical adjacent structure was an important factor and regional collaborative prevention and control should be strengthened.
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