Attention mechanism

注意机制
  • 文章类型: Journal Article
    CircRNAs主要通过结合RNA结合蛋白(RBP)在生物系统中发挥重要作用,这对于调节体内生理过程和识别致病疾病变异至关重要。因此,预测circRNA和RBP之间的相互作用是发现新治疗药物的关键步骤。各种深度学习模型在生物信息学中的应用显著提高了预测和分类性能。然而,现有的大多数预测模型仅适用于特定类型的RNA或具有简单特征的RNA。在这项研究中,我们提出了一个有吸引力的深度学习模型,MSTCRB,基于变换器和注意力机制提取多尺度特征来预测circRNA-RBP相互作用。其中,K-mer和KNF编码用于捕获circRNA的全局序列特征,利用NCP和DPCP编码提取局部序列特征,并应用CDPfold方法提取结构特征。为了提高预测性能,优化的变压器框架和注意力机制用于集成这些多尺度特征。我们在37个circRNA数据集和31个线性RNA数据集上比较了我们的模型与其他五种最先进的方法的性能。结果表明,MSTCRB的平均AUC值达到98.45%,比其他比较方法更好。上述所有数据集都保存在https://github.com/chy001228/MSTCRB_database中。git和源代码可从https://github.com/chy001228/MSTCRB获得。git.
    CircRNAs play vital roles in biological system mainly through binding RNA-binding protein (RBP), which is essential for regulating physiological processes in vivo and for identifying causal disease variants. Therefore, predicting interactions between circRNA and RBP is a critical step for the discovery of new therapeutic agents. Application of various deep-learning models in bioinformatics has significantly improved prediction and classification performance. However, most of existing prediction models are only applicable to specific type of RNA or RNA with simple characteristics. In this study, we proposed an attractive deep learning model, MSTCRB, based on transformer and attention mechanism for extracting multi-scale features to predict circRNA-RBP interactions. Therein, K-mer and KNF encoding are employed to capture the global sequence features of circRNA, NCP and DPCP encoding are utilized to extract local sequence features, and the CDPfold method is applied to extract structural features. In order to improve prediction performance, optimized transformer framework and attention mechanism were used to integrate these multi-scale features. We compared our model\'s performance with other five state-of-the-art methods on 37 circRNA datasets and 31 linear RNA datasets. The results show that the average AUC value of MSTCRB reaches 98.45 %, which is better than other comparative methods. All of above datasets are deposited in https://github.com/chy001228/MSTCRB_database.git and source code are available from https://github.com/chy001228/MSTCRB.git.
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  • 文章类型: Journal Article
    车载边缘计算(VEC)新兴智能交通系统发展的有希望的范例,可以为车载应用程序提供更低的服务延迟。然而,在具有有限资源的VEC系统中,满足具有严格延迟要求的此类应用的要求仍然是一个挑战。此外,现有的方法集中在处理具有静态分配资源的某个时隙中的卸载任务,但忽略异构任务的不同资源需求,造成资源浪费。为解决VEC系统中实时任务分流和异构资源分配问题,我们提出了一种基于注意力机制和递归神经网络(RNN)的分散解决方案,该解决方案具有多智能体分布式深度确定性策略梯度(AR-MAD4PG)。首先,为了解决代理的部分可观察性,我们构造了一个共享的代理图,并提出了一种周期性的通信机制,使边缘节点能够聚合来自其他边缘节点的信息。第二,为了帮助代理更好地了解当前系统状态,本文设计了一个基于RNN的特征提取网络来捕获VEC系统的历史状态和资源分配信息。第三,为了应对联合观测行动空间过大和信息干扰无效的挑战,我们采用多头注意机制来压缩智能体的观察-动作空间的维度。最后,我们根据实际车辆轨迹建立仿真模型,实验结果表明,我们提出的方法优于现有方法。
    Vehicular edge computing (VEC), a promising paradigm for the development of emerging intelligent transportation systems, can provide lower service latency for vehicular applications. However, it is still a challenge to fulfill the requirements of such applications with stringent latency requirements in the VEC system with limited resources. In addition, existing methods focus on handling the offloading task in a certain time slot with statically allocated resources, but ignore the heterogeneous tasks\' different resource requirements, resulting in resource wastage. To solve the real-time task offloading and heterogeneous resource allocation problem in VEC system, we propose a decentralized solution based on the attention mechanism and recurrent neural networks (RNN) with a multi-agent distributed deep deterministic policy gradient (AR-MAD4PG). First, to address the partial observability of agents, we construct a shared agent graph and propose a periodic communication mechanism that enables edge nodes to aggregate information from other edge nodes. Second, to help agents better understand the current system state, we design an RNN-based feature extraction network to capture the historical state and resource allocation information of the VEC system. Thirdly, to tackle the challenges of excessive joint observation-action space and ineffective information interference, we adopt the multi-head attention mechanism to compress the dimension of the observation-action space of agents. Finally, we build a simulation model based on the actual vehicle trajectories, and the experimental results show that our proposed method outperforms the existing approaches.
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  • 文章类型: Journal Article
    雷达观测变量反映强对流降水过程的降水量,其中准确预报是天气预报的重要难点。目前的预报方法大多是基于雷达回波外推,输入信息的不足和模型架构的无效性。本文提出了一种基于注意力机制和残差神经网络的强对流降水双向长短期记忆预报方法(ResNet-attention-BiLSTM)。首先,本文利用ResNet有效提取极端天气的关键信息,通过学习雷达观测数据的残差,解决了预测模型的均值回归问题。第二,利用注意机制对特征的融合进行自适应加权,增强降水图像数据重要特征的提取。在此基础上,本文提出了一种新的雷达观测时空推理方法,并建立了降水预报模型,它捕获序列数据的过去和未来时间顺序关系。最后,本文根据一次强对流降水过程的真实数据进行了实验,并将其性能与现有模型进行了比较,该模型的平均绝对百分比误差减少了15.94%(1公里),18.72%(3公里),和14.91%(7公里),决定系数(R2)增加了10.89%(1km),9.61%(3公里),和9.29%(7公里),证明了该预测模型的先进性和有效性。
    Radar observation variables reflect the precipitation amount of strong convective precipitation processes, which accurate forecast is an important difficulty in weather forecasting. Current forecasting methods are mostly based on radar echo extrapolation, which has the insufficiency of input information and the ineffectiveness of model architecture. This paper presents a Bidirectional Long Short-Term Memory forecasting method for strong convective precipitation based on the attention mechanism and residual neural network (ResNet-Attention-BiLSTM). First, this paper uses ResNet to effectively extract the key information of extreme weather and solves the problem of regression to the mean of the prediction model by learning the residuals of the radar observation data. Second, this paper uses the attention mechanism to adaptively weight the fusion of the features to enhance the extraction of the important features of the precipitation image data. On this basis, this paper presents a novel spatio-temporal reasoning method for radar observations and establishes a precipitation forecasting model, which captures the past and future time-order relationship of the sequence data. Finally, this paper conducts experiments based on the real collected data of a strong convective precipitation process and compares its performance with the existing models, the mean absolute percentage error of this model was reduced by 15.94% (1 km), 18.72% (3 km), and 14.91% (7 km), and the coefficient of determination ( R 2 ) was increased by 10.89% (1 km), 9.61% (3 km), and 9.29% (7 km), which proves the state of the art and effectiveness of this forecasting model.
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  • 文章类型: Journal Article
    高后果区的识别是管道完整性管理的重要任务。然而,传统的识别方法普遍存在效率低的特点,成本高,精度低。出于这个原因,本文提出了一种基于改进算法的基于掩模区域的卷积神经网络的识别方法。在传统MaskR-CNN算法中引入了协调注意机制模块,提高了识别准确率,减少了训练时间。对于识别结果,GIS工具用于沿管道两侧建立高后果区,根据相关规范确定高后果带的等级和范围。在本文中,该方法用于识别广东省某管道段的高后果区,结果表明:1、改进算法在识别密集人群中,地质灾害,易燃易爆高后果区的平均识别准确率为1.7%,3.4%,3.9%。2、与传统识别方法相比,本文方法多识别了8个建筑要素和0.311公里的管道里程。该方法可为管道高后果区的早期识别提供参考。
    Identification of high consequence areas is an important task in pipeline integrity management. However, traditional identification methods are generally characterized by low efficiency, high cost and low accuracy. For this reason, this paper proposes a recognition method based on the improved algorithm Mask Region-based Convolutional Neural Network. Coordinate attention mechanism module is introduced into the traditional Mask R-CNN algorithm to improve the recognition accuracy and reduce the training time. For the identification results, GIS tools are utilized to establish high consequence zones along both sides of the pipeline, and the grade and scope of the high consequence zones are determined according to relevant specifications.In this paper, this method is used to identify the high-consequence area of a pipeline section in Guangdong Province, the results show that: 1, the improved algorithm in the identification of densely populated, geologic hazards, flammable and explosive high consequence zones of the average accuracy of the identification of 1.7%, 3.4%, 3.9%. 2, The method in this paper identifies 8 more building elements and 0.311 more kilometers of pipeline mileage compared to traditional identification methods. The method of this paper can provide a reference for the early identification of high consequence areas of pipelines.
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  • 文章类型: Journal Article
    目的:心肌声学造影(MCE)在诊断缺血中起着至关重要的作用。梗塞,肿块和其他心脏病。在MCE图像分析领域,准确和一致的心肌分割结果对于实现各种心脏疾病的自动分析至关重要。然而,当前MCE中的手动诊断方法的可重复性差,临床适用性有限。由于超声信号的不稳定性,MCE图像往往表现出低质量和高噪声,而干扰结构会进一步破坏分割的一致性。
    方法:为了克服这些挑战,我们提出了一个用于MCE分割的深度学习网络。这种架构利用扩张卷积来捕获大规模信息,而不牺牲位置准确性,并修改多头自我注意以增强全局上下文并确保一致性,有效地克服了与低图像质量和干扰相关的问题。此外,我们还调整了变压器与卷积神经网络的级联应用,以改善MCE中的分割。
    结果:在我们的实验中,与几种最先进的分割模型相比,我们的架构在标准MCE视图中获得了84.35%的最佳Dice评分.对于具有干扰结构(质量)的非标准视图和框架,我们的模型还获得了83.33%和83.97%的最佳骰子得分,分别。
    结论:这些研究证明我们的架构具有出色的形状一致性和坚固性,这使得它能够处理各种类型的MCE的分割。我们相对精确和一致的心肌分割结果为自动分析各种心脏病提供了基本条件,有可能发现潜在的病理特征并降低医疗保健成本。
    OBJECTIVE: Myocardial contrast echocardiography (MCE) plays a crucial role in diagnosing ischemia, infarction, masses and other cardiac conditions. In the realm of MCE image analysis, accurate and consistent myocardial segmentation results are essential for enabling automated analysis of various heart diseases. However, current manual diagnostic methods in MCE suffer from poor repeatability and limited clinical applicability. MCE images often exhibit low quality and high noise due to the instability of ultrasound signals, while interference structures can further disrupt segmentation consistency.
    METHODS: To overcome these challenges, we proposed a deep-learning network for the segmentation of MCE. This architecture leverages dilated convolutions to capture high-scale information without sacrificing positional accuracy and modifies multi-head self-attention to enhance global context and ensure consistency, effectively overcoming issues related to low image quality and interference. Furthermore, we also adapted the cascade application of transformers with convolutional neural networks for improved segmentation in MCE.
    RESULTS: In our experiments, our architecture achieved the best Dice score of 84.35% for standard MCE views compared with that of several state-of-the-art segmentation models. For non-standard views and frames with interfering structures (mass), our models also attained the best Dice scores of 83.33% and 83.97%, respectively.
    CONCLUSIONS: These studies proved that our architecture is of excellent shape consistency and robustness, which allows it to deal with segmentation of various types of MCE. Our relatively precise and consistent myocardial segmentation results provide fundamental conditions for the automated analysis of various heart diseases, with the potential to discover underlying pathological features and reduce healthcare costs.
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  • 文章类型: Journal Article
    株高是玉米表型形态的重要指标,与作物生长密切相关,生物量,和抗倒伏性。准确获取玉米株高对于培育高产玉米品种具有重要意义。传统的测量方法劳动强度大,不利于数据的记录和存储。因此,利用物体检测算法实现玉米株高测量尺度的自动读取是非常必要的。
    本研究提出了一种基于改进的YOLOv5的轻量级检测模型。MobileNetv3网络取代了YOLOv5骨干网,并将基于归一化的注意力模块注意力机制模块引入到颈部网络中。CioU损失函数被替换为EioU损失函数。最后,采用组合算法实现了玉米株高从测量尺度的自动读取。
    改进后的模型平均精度达到98.6%,1.2GFLOP的计算复杂度,并占用1.8MB的内存。计算机上的检测帧速率为54.1fps。通过与YOLOv5s等模型的比较,YOLOv7和YOLOv8,很明显,改进模型在本研究中的综合性能是优越的。最后,从测试集获得的算法160株高数据与人工读数之间的比较表明,算法结果与人工读数之间的相对误差在0.2厘米以内,满足玉米测高尺自动读数的要求。
    UNASSIGNED: Plant height is a significant indicator of maize phenotypic morphology, and is closely related to crop growth, biomass, and lodging resistance. Obtaining the maize plant height accurately is of great significance for cultivating high-yielding maize varieties. Traditional measurement methods are labor-intensive and not conducive to data recording and storage. Therefore, it is very essential to implement the automated reading of maize plant height from measurement scales using object detection algorithms.
    UNASSIGNED: This study proposed a lightweight detection model based on the improved YOLOv5. The MobileNetv3 network replaced the YOLOv5 backbone network, and the Normalization-based Attention Module attention mechanism module was introduced into the neck network. The CioU loss function was replaced with the EioU loss function. Finally, a combined algorithm was used to achieve the automatic reading of maize plant height from measurement scales.
    UNASSIGNED: The improved model achieved an average precision of 98.6%, a computational complexity of 1.2 GFLOPs, and occupied 1.8 MB of memory. The detection frame rate on the computer was 54.1 fps. Through comparisons with models such as YOLOv5s, YOLOv7 and YOLOv8s, it was evident that the comprehensive performance of the improved model in this study was superior. Finally, a comparison between the algorithm\'s 160 plant height data obtained from the test set and manual readings demonstrated that the relative error between the algorithm\'s results and manual readings was within 0.2 cm, meeting the requirements of automatic reading of maize height measuring scale.
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  • 文章类型: Journal Article
    在本文中,研究了PEMFC在动态循环条件下不同运行条件下的降解性能。首先,根据PEMFC的失效机理,动态循环条件下的各种工况进行了分类,建立健康指数。同时,比较了不同工况下PEMFC在动态循环过程中输出电压下降的速率和程度。然后,提出了一种基于变分模式分解和具有注意机制的长短期记忆模型(VMD-LSTM-ATT)。针对PEMFC的性能受到外部操作的影响,VMD用于捕获全局信息和详细信息,过滤掉干扰信息。为了提高预测精度,ATT用于为特征分配权重。最后,为了验证VMD-LSTM-ATT的有效性和优越性,我们分别将其应用于动态循环条件下的三种电流条件。实验结果表明,在相同的测试条件下,与GRU关注相比,VMD-LSTM-ATT的RMSE增加了56.11%,MAE增加了28.26%。与SVM相比,RNN,LSTM和LSTM-ATT,VMD-LSTM-ATT的RMSE至少高17.26%,MAE至少高5.65%。
    In this paper, the degradation of PEMFC under different operating conditions in dynamic cycle condition is studied. Firstly, according to the failure mechanism of PEMFC, various operating conditions in dynamic cycle condition are classified, and the health indexes are established. Simultaneously, the rates and degrees of the output voltage decline of the PEMFC under different operating conditions during the dynamic cycling process were compared. Then, a model based on variational mode decomposition and long short-term memory with attention mechanism (VMD-LSTM-ATT) is proposed. Aiming at the performance of PEMFC is affected by the external operation, VMD is used to capture the global information and details, and filter out interference information. To improve the prediction accuracy, ATT is used to assign weight to the features. Finally, in order to verify the effectiveness and superiority of VMD-LSTM-ATT, we respectively apply it to three current conditions under dynamic cycle conditions. The experimental results show that under the same test conditions, RMSE of VMD-LSTM-ATT is increased by 56.11 % and MAE is increased by 28.26 % compared with GRU attention. Compared with SVM, RNN, LSTM and LSTM-ATT, RMSE of VMD-LSTM-ATT is at least 17.26 % higher and MAE is at least 5.65 % higher.
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  • 文章类型: Journal Article
    组织学图像的自动分类对于癌症的诊断至关重要。注释好的数据集的可用性有限,特别是对于罕见的癌症,由于相关图像的数量很少,因此对深度学习方法提出了重大挑战。这导致了少量学习方法的发展,具有相当大的临床重要性,因为它们旨在克服组织学图像分类的深度学习中数据稀缺的挑战。传统方法通常忽略了组织学图像中的类内多样性和类间相似性的挑战。为了解决这个问题,我们提出了一种新的相互重构网络模型,旨在应对这些挑战并改善组织学图像的少量分类性能。
    我们方法的关键是提取细微和有区别的特征。我们引入了特征增强模块(FEM)和相互重建模块,以增加类之间的差异,同时减少类内的差异。首先,我们使用特征提取器提取支持和查询图像的特征。这些特征然后由FEM处理,使用自我注意力机制进行特征的自我重建,增强详细功能的学习。然后将这些增强的特征输入到相互重建模块中。此模块使用增强的支持功能来重建增强的查询功能,反之亦然。查询样本的分类基于查询特征与重构的查询特征之间以及支持特征与重构的支持特征之间的距离的加权计算。
    我们使用专门创建的少量组织学图像数据集广泛评估了我们的模型。结果表明,在5路10镜头设置中,我们的模型取得了92.09%的惊人准确率。与模型不可知元学习(MAML)方法相比,准确性提高了23.59%,它不关注细粒度的属性。在更具挑战性的情况下,5向单发设置,我们的模型也表现良好,比ProtoNet提高了18.52%,这并不能解决这一挑战。其他消融研究表明了每个模块的有效性和互补性,并证实了我们的方法能够解析组织学图像中类别之间的小差异和类别内的大差异。这些发现强烈支持了我们提出的方法在组织学图像的少射分类中的优越性。
    相互重建网络在组织学图像的少镜头分类中提供了出色的性能,成功克服了班级之间的相似性和班级内部多样性的挑战。这标志着组织学图像的自动分类的显著进步。
    UNASSIGNED: The automated classification of histological images is crucial for the diagnosis of cancer. The limited availability of well-annotated datasets, especially for rare cancers, poses a significant challenge for deep learning methods due to the small number of relevant images. This has led to the development of few-shot learning approaches, which bear considerable clinical importance, as they are designed to overcome the challenges of data scarcity in deep learning for histological image classification. Traditional methods often ignore the challenges of intraclass diversity and interclass similarities in histological images. To address this, we propose a novel mutual reconstruction network model, aimed at meeting these challenges and improving the few-shot classification performance of histological images.
    UNASSIGNED: The key to our approach is the extraction of subtle and discriminative features. We introduce a feature enhancement module (FEM) and a mutual reconstruction module to increase differences between classes while reducing variance within classes. First, we extract features of support and query images using a feature extractor. These features are then processed by the FEM, which uses a self-attention mechanism for self-reconstruction of features, enhancing the learning of detailed features. These enhanced features are then input into the mutual reconstruction module. This module uses enhanced support features to reconstruct enhanced query features and vice versa. The classification of query samples is based on weighted calculations of the distances between query features and reconstructed query features and between support features and reconstructed support features.
    UNASSIGNED: We extensively evaluated our model using a specially created few-shot histological image dataset. The results showed that in a 5-way 10-shot setup, our model achieved an impressive accuracy of 92.09%. This is a 23.59% improvement in accuracy compared to the model-agnostic meta-learning (MAML) method, which does not focus on fine-grained attributes. In the more challenging, 5-way 1-shot setting, our model also performed well, demonstrating a 18.52% improvement over the ProtoNet, which does not address this challenge. Additional ablation studies indicated the effectiveness and complementary nature of each module and confirmed our method\'s ability to parse small differences between classes and large variations within classes in histological images. These findings strongly support the superiority of our proposed method in the few-shot classification of histological images.
    UNASSIGNED: The mutual reconstruction network provides outstanding performance in the few-shot classification of histological images, successfully overcoming the challenges of similarities between classes and diversity within classes. This marks a significant advancement in the automated classification of histological images.
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  • 文章类型: Journal Article
    脑部疾病,特别是胶质瘤和脑转移的分类以及中风中HT的预测,在医疗保健方面构成重大挑战。现有方法,主要依靠临床数据或基于成像的技术,如影像组学,在实现令人满意的分类精度方面往往达不到。这些方法无法充分捕获对准确诊断至关重要的细微差别特征,经常受到噪音和无法跨各种尺度整合信息的阻碍。
    我们提出了一种新颖的方法,该方法通过多尺度特征融合来掩盖注意力机制,用于多模态脑疾病分类任务,称为M3,旨在提取与疾病高度相关的特征。然后使用主成分分析(PCA)对提取的特征进行降维,然后用支持向量机(SVM)进行分类以获得预测结果。
    我们的方法对脑肿瘤和中风的多参数MRI数据集进行了严格的测试。结果表明,在解决关键的临床挑战方面取得了显着进步,包括胶质瘤的分类,脑转移瘤,以及出血性中风转化的预测。消融研究进一步验证了我们的注意力机制和特征融合模块的有效性。
    这些发现强调了我们的方法满足并超越当前临床诊断需求的潜力。为在脑部疾病的诊断和治疗中提高医疗保健结果提供了有希望的前景。
    UNASSIGNED: Brain diseases, particularly the classification of gliomas and brain metastases and the prediction of HT in strokes, pose significant challenges in healthcare. Existing methods, relying predominantly on clinical data or imaging-based techniques such as radiomics, often fall short in achieving satisfactory classification accuracy. These methods fail to adequately capture the nuanced features crucial for accurate diagnosis, often hindered by noise and the inability to integrate information across various scales.
    UNASSIGNED: We propose a novel approach that mask attention mechanisms with multi-scale feature fusion for Multimodal brain disease classification tasks, termed M 3, which aims to extract features highly relevant to the disease. The extracted features are then dimensionally reduced using Principal Component Analysis (PCA), followed by classification with a Support Vector Machine (SVM) to obtain the predictive results.
    UNASSIGNED: Our methodology underwent rigorous testing on multi-parametric MRI datasets for both brain tumors and strokes. The results demonstrate a significant improvement in addressing critical clinical challenges, including the classification of gliomas, brain metastases, and the prediction of hemorrhagic stroke transformations. Ablation studies further validate the effectiveness of our attention mechanism and feature fusion modules.
    UNASSIGNED: These findings underscore the potential of our approach to meet and exceed current clinical diagnostic demands, offering promising prospects for enhancing healthcare outcomes in the diagnosis and treatment of brain diseases.
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  • 文章类型: Journal Article
    食用油中的重金属含量与其人类消费的适用性密切相关。在这项研究中,使用标准大豆油作为样品,使用微波传感技术定量指定浓度的重金属。此外,开发了一种基于注意力的深度残差神经网络模型,作为预测食用油中重金属的传统建模方法的替代方法。在微波数据处理过程中,这项工作继续讨论了深度对卷积神经网络的影响。结果表明,所提出的基于注意力的残差网络模型在所有指标上都优于所有其他深度学习模型。该模型的性能特征在于决定系数(R2)为0.9605,相对预测偏差(RPD)为5.0479,均方根误差(RMSE)为3.1654mg/kg。研究结果表明,微波检测技术和化学计量学的结合具有评估食用油中重金属含量的巨大潜力。
    The heavy metal content in edible oils is intricately associated with their suitability for human consumption. In this study, standard soybean oil was used as a sample to quantify the specified concentration of heavy metals using microwave sensing technique. In addition, an attention-based deep residual neural network model was developed as an alternative to traditional modeling methods for predicting heavy metals in edible oils. In the process of microwave data processing, this work continued to discuss the impact of depth on convolutional neural networks. The results demonstrated that the proposed attention-based residual network model outperforms all other deep learning models in all metrics. The performance of this model was characterized by a coefficient of determination (R2) of 0.9605, a relative prediction deviation (RPD) of 5.0479, and a root mean square error (RMSE) of 3.1654 mg/kg. The research findings indicate that the combination of microwave detection technology and chemometrics holds significant potential for assessing heavy metal levels in edible oils.
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