Aorta segmentation

  • 文章类型: Journal Article
    目的:主动脉夹层(AD)是一种需要快速准确诊断的严重疾病。在这项研究中,我们旨在通过提出一种新颖的计算机断层扫描图像中的主动脉分割方法,该方法使用变压器和UNet级联网络的组合以及放大和放大方案(ZOZI-seg)来提高AD的诊断准确性。
    方法:所提出的方法分割了主动脉的每个隔室,包括真腔(TL),假腔(FL),和血栓形成(TH)使用级联策略,该策略基于ZOZI方案的动态补丁大小捕获全局上下文(解剖结构)和局部细节纹理。ZOZI-seg模型具有两级体系结构,同时使用“用于全景上下文感知的3D转换器”和用于局部纹理细化的3DUNet。“在消融研究中证明了独特的ZOZI修补策略。使用AsanMedicalCenter的数据集测试了我们提出的ZOZI-seg模型的性能,并将其与nnUNet和nnFormer等现有模型进行了比较。
    结果:在分割准确性方面,我们的方法产生了更好的结果,TL的Dice相似系数(DSC)为0.917、0.882和0.630,FL,TH,分别。此外,我们使用外部数据集间接地将我们的模型与以前的研究进行了比较,以评估其稳健性和可泛化性.
    结论:该方法可能有助于不同临床情况下AD的诊断和治疗,为进一步研究和临床应用提供有力依据。
    OBJECTIVE: Aortic dissection (AD) is a serious condition requiring rapid and accurate diagnosis. In this study, we aimed to improve the diagnostic accuracy of AD by presenting a novel method for aortic segmentation in computed tomography images that uses a combination of a transformer and a UNet cascade network with a Zoom-Out and Zoom-In scheme (ZOZI-seg).
    METHODS: The proposed method segments each compartment of the aorta, comprising the true lumen (TL), false lumen (FL), and thrombosis (TH) using a cascade strategy that captures both the global context (anatomical structure) and the local detail texture based on the dynamic patch size with ZOZI schemes. The ZOZI-seg model has a two-stage architecture using both a \"3D transformer for panoptic context-awareness\" and a \"3D UNet for localized texture refinement.\" The unique ZOZI strategies for patching were demonstrated in an ablation study. The performance of our proposed ZOZI-seg model was tested using a dataset from Asan Medical Center and compared with those of existing models such as nnUNet and nnFormer.
    RESULTS: In terms of segmentation accuracy, our method yielded better results, with Dice similarity coefficients (DSCs) of 0.917, 0.882, and 0.630 for TL, FL, and TH, respectively. Furthermore, we indirectly compared our model with those in previous studies using an external dataset to evaluate its robustness and generalizability.
    CONCLUSIONS: This approach may help in the diagnosis and treatment of AD in different clinical situations and provide a strong basis for further research and clinical applications.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    可以通过心脏计算机断层扫描(CT)研究评估胸主动脉钙(TAC),以改善心血管风险预测。这项研究的目的是开发一种全自动系统来检测TAC并评估其将患者分为四个TAC风险类别的性能。该方法从分割胸主动脉开始,结合三个受过轴向训练的UNets,矢状和冠状CT图像。之后,周围候选病变使用三个用正交补片训练的组合卷积神经网络(CNN)进行分类.图像数据集包括来自一组心血管患者(年龄57±9岁,80%的男性,65%TAC>0)。在测试集(N=119)中,UNets组合能够成功分割胸主动脉,平均容积差为0.3±11.7ml(<6%),中位Dice系数为0.947.合并的CNN对候选病变进行了准确分类,87%的患者(N=104)被准确地置于其相应的风险类别中(Kappa=0.826,ICC=0.9915)。可以使用UNet从心脏CT图像自动估计TAC测量以隔离胸主动脉和CNN以对钙化病变进行分类。 .
    Thoracic aorta calcium (TAC) can be assessed from cardiac computed tomography (CT) studies to improve cardiovascular risk prediction. The aim of this study was to develop a fully automatic system to detect TAC and to evaluate its performance for classifying the patients into four TAC risk categories. The method started by segmenting the thoracic aorta, combining three UNets trained with axial, sagittal and coronal CT images. Afterwards, the surrounding lesion candidates were classified using three combined convolutional neural networks (CNNs) trained with orthogonal patches. Image datasets included 1190 non-enhanced ECG-gated cardiac CT studies from a cohort of cardiovascular patients (age 57 ± 9 years, 80% men, 65% TAC > 0). In the test set (N = 119), the combination of UNets was able to successfully segment the thoracic aorta with a mean volume difference of 0.3 ± 11.7 ml (<6%) and a median Dice coefficient of 0.947. The combined CNNs accurately classified the lesion candidates and 87% of the patients (N = 104) were accurately placed in their corresponding risk categories (Kappa = 0.826, ICC = 0.9915). TAC measurement can be estimated automatically from cardiac CT images using UNets to isolate the thoracic aorta and CNNs to classify calcified lesions.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    目的:主动脉分割在临床实践中非常有用,允许诊断多种病理,比如解剖,动脉瘤和闭塞性疾病。在这种情况下,图像分割是应用诊断算法的先决条件,这反过来可以预测可能的并发症并进行风险评估,这对拯救生命至关重要。本文的目的是提出一种新颖的全自动三维分割方法,它结合了基本的图像处理技术和更先进的机器学习算法,用于在3DCT成像数据中检测和建模主动脉。
    方法:基于初始强度阈值的分割过程之后是基于分类的分割方法,基于马尔可夫随机场网络。对所提出的两阶段分割过程的结果进行建模和可视化。
    结果:将提出的方法应用于16个3DCT数据集,并将提取的主动脉段重建为3D模型。对其他常用的分割技术进行了定性和定量的分割性能评估,就达到的准确性而言,与实际的主动脉相比,由专家手动定义。
    结论:所提出的方法实现了优越的分割性能,与所有比较的分割技术相比,在提取的3D主动脉模型的准确性方面。因此,所提出的分割方案可用于临床实践,例如在治疗计划和评估中,因为它可以加快医学成像数据的评估,这通常是一个漫长而乏味的过程。
    OBJECTIVE: Aorta segmentation is extremely useful in clinical practice, allowing the diagnosis of numerous pathologies, such as dissections, aneurysms and occlusive disease. In such cases, image segmentation is prerequisite for applying diagnostic algorithms, which in turn allow the prediction of possible complications and enable risk assessment, which is crucial in saving lives. The aim of this paper is to present a novel fully automatic 3D segmentation method, which combines basic image processing techniques and more advanced machine learning algorithms, for detecting and modelling the aorta in 3D CT imaging data.
    METHODS: An initial intensity threshold-based segmentation procedure is followed by a classification-based segmentation approach, based on a Markov Random Field network. The result of the proposed two-stage segmentation process is modelled and visualized.
    RESULTS: The proposed methodology was applied to 16 3D CT data sets and the extracted aortic segments were reconstructed as 3D models. The performance of segmentation was evaluated both qualitatively and quantitatively against other commonly used segmentation techniques, in terms of the accuracy achieved, compared to the actual aorta, which was defined manually by experts.
    CONCLUSIONS: The proposed methodology achieved superior segmentation performance, compared to all compared segmentation techniques, in terms of the accuracy of the extracted 3D aortic model. Therefore, the proposed segmentation scheme could be used in clinical practice, such as in treatment planning and assessment, as it can speed up the evaluation of the medical imaging data, which is commonly a lengthy and tedious process.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    支架移植物(IVFS)的体外开窗术需要高精度的导航方法来达到最佳的手术效果。本研究旨在提出一种用于IVFS的增强现实(AR)导航方法,它可以提供原位叠加显示来定位开窗位置。
    我们提出了一种AR导航方法,以协助医生进行IVFS。采用基于深度学习的主动脉分割算法实现了主动脉的自动快速分割。集成了基于Vuforia的虚实配准和标记识别算法,以确保准确的原位AR图像。
    所提出的方法可以提供三维原位AR图像,虚实配准后的基准配准误差为2.070mm。主动脉分割实验获得的骰子相似系数为91.12%,Hausdorff距离为2.59,优于改进前的常规算法。
    所提出的方法可以直观,准确地定位开窗位置,因此可以协助医生进行IVFS。
    In vitro fenestration of stent-graft (IVFS) demands high-precision navigation methods to achieve optimal surgical outcomes. This study aims to propose an augmented reality (AR) navigation method for IVFS, which can provide in situ overlay display to locate fenestration positions.
    We propose an AR navigation method to assist doctors in performing IVFS. A deep learning-based aorta segmentation algorithm is used to achieve automatic and rapid aorta segmentation. The Vuforia-based virtual-real registration and marker recognition algorithm are integrated to ensure accurate in situ AR image.
    The proposed method can provide three-dimensional in situ AR image, and the fiducial registration error after virtual-real registration is 2.070 mm. The aorta segmentation experiment obtains dice similarity coefficient of 91.12% and Hausdorff distance of 2.59, better than conventional algorithms before improvement.
    The proposed method can intuitively and accurately locate fenestration positions, and therefore can assist doctors in performing IVFS.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:非对比胸部CT广泛用于肺癌筛查,其图像携带胸主动脉的潜在信息。胸主动脉的形态学评估可能在胸主动脉相关疾病的症状前检测和未来不良事件的风险预测中具有潜在价值。然而,由于这些图像中的脉管系统对比度低,主动脉形态的视觉评估具有挑战性,且高度依赖于医师的经验.
    目的:本研究的主要目的是提出一种基于深度学习的新型多任务框架,用于在未增强的胸部CT上同时进行主动脉分割和关键标志定位。次要目标是使用该算法来测量胸主动脉形态的定量特征。
    方法:所提出的网络由两个子网组成,以进行分割和地标检测,分别。分割子网旨在划定Valsalva的主动脉窦,主动脉干和主动脉分支,而检测子网被设计为定位主动脉上的五个地标,以促进形态学测量。网络共享一个公共编码器,并行运行解码器,充分利用分割和地标检测任务的协同作用。此外,目标体积(VOI)模块和具有注意力机制的挤压和激励(SE)模块被纳入,以进一步提高特征学习的能力。
    结果:受益于多任务框架,我们获得了0.95的平均骰子得分,0.53毫米的平均对称表面距离,主动脉分割的Hausdorff距离为2.13mm,在40个测试案例中,地标定位的均方误差(MSE)为3.23mm。
    结论:我们提出了一个多任务学习框架,可以同时执行胸主动脉的分割和标志的定位,并取得了良好的效果。它可以支持主动脉形态的定量测量,以进一步分析主动脉疾病,比如高血压。
    Non-contrast chest CT is widely used for lung cancer screening, and its images carry potential information of the thoracic aorta. The morphological assessment of the thoracic aorta may have potential value in the presymptomatic detection of thoracic aortic-related diseases and the risk prediction of future adverse events. However, due to low vasculature contrast in such images, visual assessment of aortic morphology is challenging and highly depends on physicians\' experience.
    The main objective of this study is to propose a novel multi-task framework based on deep learning for simultaneous aortic segmentation and localization of key landmarks on unenhanced chest CT. The secondary objective is to use the algorithm to measure quantitative features of thoracic aorta morphology.
    The proposed network is composed of two subnets to carry out segmentation and landmark detection, respectively. The segmentation subnet aims to demarcate the aortic sinuses of the Valsalva, aortic trunk and aortic branches, whereas the detection subnet is devised to locate five landmarks on the aorta to facilitate morphology measures. The networks share a common encoder and run decoders in parallel, taking full advantage of the synergy of the segmentation and landmark detection tasks. Furthermore, the volume of interest (VOI) module and the squeeze-and-excitation (SE) block with attention mechanisms are incorporated to further boost the capability of feature learning.
    Benefiting from the multitask framework, we achieved a mean Dice score of 0.95, average symmetric surface distance of 0.53 mm, Hausdorff distance of 2.13 mm for aortic segmentation, and mean square error (MSE) of 3.23 mm for landmark localization in 40 testing cases.
    We proposed a multitask learning framework which can perform segmentation of the thoracic aorta and localization of landmarks simultaneously and achieved good results. It can support quantitative measurement of aortic morphology for further analysis of aortic diseases, such as hypertension.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    对比增强计算机断层扫描血管造影(CTA)的定量分析对于评估主动脉解剖至关重要。识别病理,并在血管外科手术中进行术前规划。为了克服手动和半自动分割工具的局限性,我们应用基于深度学习的管道来自动分割主动脉腔的CTA扫描,从升主动脉到髂动脉,考虑三维空间相干性。
    第一个卷积神经网络(CNN)用于粗略地分割和定位整个子采样CTA体积中的主动脉,然后使用三个单视图CNN从轴向有效地分割主动脉腔,矢状,和冠状平面在更高的分辨率。最后,对三个正交网络的预测进行集成,以获得具有空间相干性的分割。
    为了识别主动脉腔而进行的粗分割实现了0.92±0.01的Dice系数(DSC)。单视图轴向,矢状,和冠状CNN的DSC分别为0.92±0.02、0.92±0.04和0.91±0.02。多视图积分在10次CTA扫描的测试组上提供0.93±0.02的DSC和0.80±0.26mm的平均表面距离。地面真值数据集的生成大约需要150小时,整个训练过程需要18小时。在预测阶段,采用的管道需要大约25±1s才能得到最终的分割。
    获得的结果表明,所提出的管道可以有效地定位和分割动脉瘤患者的主动脉腔。
    The quantitative analysis of contrast-enhanced Computed Tomography Angiography (CTA) is essential to assess aortic anatomy, identify pathologies, and perform preoperative planning in vascular surgery. To overcome the limitations given by manual and semi-automatic segmentation tools, we apply a deep learning-based pipeline to automatically segment the CTA scans of the aortic lumen, from the ascending aorta to the iliac arteries, accounting for 3D spatial coherence.
    A first convolutional neural network (CNN) is used to coarsely segment and locate the aorta in the whole sub-sampled CTA volume, then three single-view CNNs are used to effectively segment the aortic lumen from axial, sagittal, and coronal planes under higher resolution. Finally, the predictions of the three orthogonal networks are integrated to obtain a segmentation with spatial coherence.
    The coarse segmentation performed to identify the aortic lumen achieved a Dice coefficient (DSC) of 0.92 ± 0.01. Single-view axial, sagittal, and coronal CNNs provided a DSC of 0.92 ± 0.02, 0.92 ± 0.04, and 0.91 ± 0.02, respectively. Multi-view integration provided a DSC of 0.93 ± 0.02 and an average surface distance of 0.80 ± 0.26 mm on a test set of 10 CTA scans. The generation of the ground truth dataset took about 150 h and the overall training process took 18 h. In prediction phase, the adopted pipeline takes around 25 ± 1 s to get the final segmentation.
    The achieved results show that the proposed pipeline can effectively localize and segment the aortic lumen in subjects with aneurysm.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Sci-hub)

       PDF(Pubmed)

公众号