Antimicrobial peptides (AMPs)

抗菌肽 ( AMP )
  • 文章类型: Journal Article
    传统抗生素的过度使用造成细菌耐药性,严重影响了传统抗生素的治疗效果,使得新型抗菌药物的探索尤为重要。多项研究表明,生物活性肽由于其广谱抗菌作用和缺乏耐药性,已成为新型抗菌药物的重要来源。在这项研究中,一种新的生物活性肽Nigrosin-6VL是从金色交叉带青蛙的皮肤分泌中表征的,AndersoniiOdorrana,通过使用“猎枪”克隆策略。对黑色素-6VL的Rana盒的修饰揭示了其在抗菌功能中的关键作用。肽类似物,2170-2R,旨在保持RanaBox结构,同时增强阳离子度,表现出改善的治疗效果,特别是针对革兰氏阴性细菌,治疗值为45.27。协同研究表明,2170-2R继承了亲本肽的协同抗菌活性,并有效增强了头孢吡肟和庆大霉素对浮游细胞和生物膜的抗菌能力。具体来说,2170-2R可以与头孢吡肟和庆大霉素有效协同对抗不同菌株的铜绿假单胞菌生物膜。因此,2170-2R有望成为一种有效的抗微生物剂,用于抵抗铜绿假单胞菌引起的感染。
    The overuse of traditional antibiotics has resulted in bacterial resistance and seriously compromised the therapeutic efficacy of traditional antibiotics, making the exploration of new antimicrobials particularly important. Several studies have shown that bioactive peptides have become an important source of new antimicrobial drugs due to their broad-spectrum antibacterial action and lack of susceptibility to resistance. In this study, a novel bioactive peptide Nigrosin-6VL was characterised from the skin secretion of the golden cross band frog, Odorrana andersonii, by using the \'shotgun\' cloning strategy. Modifications on the Rana Box of Nigrosin-6VL revealed its critical role in antimicrobial functions. The peptide analogue, 2170-2R, designed to preserve the Rana Box structure while enhancing cationicity, exhibited improved therapeutic efficacy, particularly against Gram-negative bacteria, with a therapeutic value of 45.27. Synergistic studies demonstrated that 2170-2R inherits the synergistic antimicrobial activities of the parent peptides and effectively enhances the antimicrobial capacity of cefepime and gentamicin against both planktonic cells and biofilms. Specifically, 2170-2R can synergise effectively with cefepime and gentamicin against different strains of P. aeruginosa biofilms. Consequently, 2170-2R holds promise as a potent antimicrobial agent developed to combat infections induced by Pseudomonas aeruginosa.
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  • 文章类型: Journal Article
    水产养殖是一个繁荣的经济部门,受到病毒感染的威胁。在威胁鱼类养殖的病毒中,Betanodavirus(NNV)在地中海中极为重要,对欧洲鲈鱼等高交易物种产生影响。在这种情况下,抗菌肽(AMP)的应用已经成为一种潜在的生物技术工具。这项工作的目的是评估两种欧洲鲈鱼衍生的AMP的治疗应用,NK-溶素(Nkl)和双中心素(Dic),对抗NNV感染。合成的Dic肽能够显著降低NNV诱导的死亡率,而Nkl不能这样做。尽管Dic和Nkl肽都不能改变NNV的转录水平和感染细胞的数量,Nkl似乎增加了每个细胞的病毒载量。有趣的是,Nkl和Dic肽均显示免疫调节作用。例如,我们的数据揭示了不同AMP之间的相互作用,在基因和蛋白质水平。否则,Nkl和Dic肽在NNV感染后引发抗炎平衡,以及将巨噬细胞和B细胞募集到感染的目标部位,大脑。总之,Dic可以被提议作为对抗NNV的治疗候选物。
    Aquaculture is a prosperous economic sector threatened by viral infections. Among the viruses threatening fish culture, Betanodavirus (NNV) is extremely important in the Mediterranean Sea affecting to highly traded species as European sea bass. In this context, application of antimicrobial peptides (AMPs) has arisen as a potential biotechnological tool. The aim of this work was to evaluate the therapeutic application of two European sea bass-derived AMPs, NK-lysin (Nkl) and dicentracin (Dic), against NNV infections. Synthetic Dic peptide was able to significantly reduce NNV-induced mortalities while Nkl failed to do so. Although neither Dic nor Nkl peptides were able to alter the transcriptional levels of NNV and the number of infected cells, Nkl seemed to increase the viral load per cell. Interestingly, both Nkl and Dic peptides showed immunomodulatory roles. For instance, our data revealed an interplay among different AMPs, at both gene and protein levels. Otherwise, Nkl and Dic peptides provoked an anti-inflammatory balance upon NNV infection, as well as the recruitment of macrophages and B cells to the target site of the infection, the brain. In conclusion, Dic can be proposed as a therapeutic candidate to combat NNV.
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  • 文章类型: Journal Article
    随着抗生素在伴侣动物中用于细菌性皮肤感染的临床应用越来越普遍,细菌耐药性问题变得更加明显。抗菌肽,作为传统抗生素的新替代品,引起了广泛的关注。在我们的研究中,在KM小鼠中测试了合成肽ADD-A和CBD3-ABU对抗假中间葡萄球菌皮肤感染。局部应用ADD-A并通过腹膜内注射,与对照组和包括CBD3-ABU的治疗相比,氨苄西林钠,和盐水。伤口收缩,在感染后第3天和第11天评估细菌计数和组织学.ADD-A和氨苄青霉素治疗在伤口愈合方面显著优于盐水(分别为p<0.0001和p<0.001)。ADD-A还显示出明显低于氨苄青霉素的细菌计数(p<0.0001)。组织学上,应用ADD-A的伤口有更好的表皮连续性和较厚的表皮比正常,有恢复的毛囊和皮脂腺。ADD-A的有效性表明它是治疗动物皮肤感染的抗生素的潜在替代品。
    As the clinical application of antibiotics for bacterial skin infections in companion animals becomes increasingly prevalent, the issue of bacterial resistance has become more pronounced. Antimicrobial peptides, as a novel alternative to traditional antibiotics, have garnered widespread attention. In our study, synthetic peptides ADD-A and CBD3-ABU were tested against Staphylococcus pseudintermedius skin infections in KM mice. ADD-A was applied topically and through intraperitoneal injection, compared with control groups and treatments including CBD3-ABU, ampicillin sodium, and saline. Wound contraction, bacterial counts and histology were assessed on days 3 and 11 post-infection. ADD-A and ampicillin treatments significantly outperformed saline in wound healing (p < 0.0001 and p < 0.001, respectively). ADD-A also showed a markedly lower bacterial count than ampicillin (p < 0.0001). Histologically, ADD-A-applied wounds had better epidermal continuity and a thicker epidermis than normal, with restored follicles and sebaceous glands. ADD-A\'s effectiveness suggests it as a potential alternative to antibiotics for treating skin infections in animals.
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  • 文章类型: Journal Article
    抗菌素耐药性构成了重大的全球健康威胁,需要创新的方法来对抗它。这篇综述探讨了在各种细菌菌株中观察到的抗菌素耐药性的各种机制。我们研究了各种策略,包括抗菌肽(AMP),新型抗菌材料,药物输送系统,疫苗,抗体疗法,和非传统的抗生素治疗。通过全面的文献综述,评估这些策略的有效性和挑战.研究结果揭示了AMP由于其独特的机制和较低的抗性发展倾向而在对抗抗性方面的潜力。此外,新型药物递送系统,比如纳米粒子,在增强抗生素功效和克服耐药机制方面显示出希望。疫苗和抗体疗法提供了预防措施,尽管他们的发展存在挑战。非传统的抗生素治疗,包括CRISPR-Cas系统,提出对抗抵抗的替代方法。总的来说,本综述强调了多层面战略和全球协调努力有效解决抗菌素耐药性的重要性.
    Antimicrobial resistance poses a significant global health threat, necessitating innovative approaches for combatting it. This review explores various mechanisms of antimicrobial resistance observed in various strains of bacteria. We examine various strategies, including antimicrobial peptides (AMPs), novel antimicrobial materials, drug delivery systems, vaccines, antibody therapies, and non-traditional antibiotic treatments. Through a comprehensive literature review, the efficacy and challenges of these strategies are evaluated. Findings reveal the potential of AMPs in combating resistance due to their unique mechanisms and lower propensity for resistance development. Additionally, novel drug delivery systems, such as nanoparticles, show promise in enhancing antibiotic efficacy and overcoming resistance mechanisms. Vaccines and antibody therapies offer preventive measures, although challenges exist in their development. Non-traditional antibiotic treatments, including CRISPR-Cas systems, present alternative approaches to combat resistance. Overall, this review underscores the importance of multifaceted strategies and coordinated global efforts to address antimicrobial resistance effectively.
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  • 文章类型: Journal Article
    新生儿眼症是一种微生物收缩,损害视力,主要发生在新生儿中。婴儿特别容易受到感染母亲在出生时获得的细菌感染,尤其是淋病奈瑟菌和沙眼衣原体。几十年来,淋病奈瑟菌正在对目前处方的大多数抗生素产生抗药性。为了应对这一挑战,必须找到有效且具有成本效益的预防和治疗治疗剂,淋病奈瑟菌不易产生抗药性。这篇综述展示了替代疗法,如抗微生物脂肪酸,-肽,-纳米配方等.,目前明显针对淋病奈瑟菌介导的新生儿眼炎,这仍然是眼部发病的主要原因,发展中国家的新生儿失明甚至死亡。
    淋病是由淋病奈瑟菌引起的性传播感染。淋病奈瑟菌可在受感染的母亲出生期间感染新生儿的眼睛。这些婴儿会发红,眼睛的刺激和不适,一种叫做新生儿眼炎的病症。这种情况会导致失明。抗生素用于治疗淋病奈瑟菌感染,但是最近几十年来,它一直在快速发展,以避免大多数抗生素的作用。这被称为抗生素抗性。有,因此,迫切需要易于获得的非抗生素疗法。在这篇文章中,对目前可用于治疗淋病奈瑟菌的各种替代疗法进行了综述.
    Ophthalmia neonatorum is a microbial contraction, damaging eyesight, occurring largely among neonates. Infants are particularly vulnerable to bacterial infections acquired during birth from infected mothers, especially from Neisseria gonorrhoeae and Chlamydia trachomatis. Over the decades, N. gonorrhoeae is alarmingly developing a resistance to most antibiotics currently prescribed. To counter this challenge, it is imperative to find potent and cost-effective therapeutic agents for prophylaxis and treatment, to which the N. gonorrhoeae cannot easily develop resistance. This review showcases alternate therapies such as antimicrobial-fatty acids, -peptides, -nano-formulations etc., currently evident against N. gonorrhoeae-mediated ophthalmia neonatorum, which remains a major cause of ocular morbidity, blindness and even death among neonates in developing countries.
    Gonorrhea is a sexually transmitted infection caused by the bacteria Neisseria gonorrhoeae. N. gonorrhoeae can infect a newborn\'s eyes during birth by an infected mother. These babies can develop redness, irritation and discomfort in the eye(s), a condition called ophthalmia neonatorum. This condition can lead to blindness. Antibiotics are used to treat N. gonorrhoeae infections, but in recent decades, it has been fast evolving to avoid the action of most antibiotics. This is known as antibiotic resistance. There is, therefore, an urgent need for easily accessible non-antibiotic therapies. In this article, various alternate therapies currently available to treat N. gonorrhoeae have been reviewed.
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  • 文章类型: Journal Article
    抗菌肽(AMP),具有不同功能的短肽,有效地瞄准和打击各种生物。化学抗生素的广泛滥用导致微生物耐药性增加。由于其耐药性和毒性低,AMP被认为是传统抗生素的有希望的替代品。虽然现有的深度学习技术增强了AMP的生成,这也带来了一些挑战。首先,AMP的产生忽略了氨基酸之间复杂的相互依赖关系。其次,当前的模型无法整合筛选等关键任务,属性预测和迭代优化。因此,我们开发了一个集成的深度学习框架,Diff-AMP,自动化AMP生成,identification,属性预测和迭代优化。我们创新性地将动力学扩散和注意力机制集成到强化学习框架中,以实现高效的AMP生成。此外,我们的预测模块结合了训练前和迁移学习策略,用于精确的AMP识别和筛查。我们采用卷积神经网络进行多属性预测,并采用基于强化学习的迭代优化策略来产生不同的AMP。这个框架使分子生成自动化,筛选,属性预测和优化,从而推进AMP研究。我们还在Web服务器上部署了Diff-AMP,用代码,数据可用性部分中提供的数据和服务器详细信息。
    Antimicrobial peptides (AMPs), short peptides with diverse functions, effectively target and combat various organisms. The widespread misuse of chemical antibiotics has led to increasing microbial resistance. Due to their low drug resistance and toxicity, AMPs are considered promising substitutes for traditional antibiotics. While existing deep learning technology enhances AMP generation, it also presents certain challenges. Firstly, AMP generation overlooks the complex interdependencies among amino acids. Secondly, current models fail to integrate crucial tasks like screening, attribute prediction and iterative optimization. Consequently, we develop a integrated deep learning framework, Diff-AMP, that automates AMP generation, identification, attribute prediction and iterative optimization. We innovatively integrate kinetic diffusion and attention mechanisms into the reinforcement learning framework for efficient AMP generation. Additionally, our prediction module incorporates pre-training and transfer learning strategies for precise AMP identification and screening. We employ a convolutional neural network for multi-attribute prediction and a reinforcement learning-based iterative optimization strategy to produce diverse AMPs. This framework automates molecule generation, screening, attribute prediction and optimization, thereby advancing AMP research. We have also deployed Diff-AMP on a web server, with code, data and server details available in the Data Availability section.
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  • 文章类型: Journal Article
    由于对大多数当前可用的抗微生物药物的抗生素抗性,细菌性伤口感染的负担显著增加。在这里,第一次,两种阳离子N-芳基(吡啶基和氨基肉桂基)壳聚糖衍生物与不同世代的抗菌肽树状聚合物(AMPDs)的化学偶联(第一,第二,和第三)通过硫醚-卤代乙酰基反应。新型壳聚糖-AMPD偶联物通过杀死铜绿假单胞菌显示出高选择性,对哺乳动物细胞的毒性非常低,以及极低的红细胞溶血。电子显微镜显示,与AMPD偶联的新型壳聚糖衍生物破坏了革兰氏阴性铜绿假单胞菌的内膜和外膜。此外,壳聚糖-AMPD缀合物在极低浓度下显示协同作用。新的壳聚糖-AMPD缀合物可以用作有效的抗微生物治疗剂,根除病原体,如存在于急性和慢性感染伤口中的病原体。
    The burden of bacterial wound infections has considerably increased due to antibiotic resistance to most of the currently available antimicrobial drugs. Herein, for the first time, a chemical coupling of two cationic N-aryl (pyridyl and aminocinnamyl) chitosan derivatives to antimicrobial peptide dendrimers (AMPDs) of different generations (first, second, and third) via thioether-haloacetyl reaction is reported. The new chitosan-AMPD conjugates show high selectivity by killing Pseudomonas aeruginosa and very low toxicity toward mammalian cells, as well as extremely low hemolysis to red blood cells. Electron microscopy reveals that the new chitosan derivatives coupled to AMPD destroy both the inner and outer membranes of Gram-negative P. aeruginosa. Moreover, chitosan-AMPD conjugates show synergetic effects within extremely low concentrations. The new chitosan-AMPD conjugates can be used as potent antimicrobial therapeutic agents, to eradicate pathogens such as those present in acute and chronic infected wounds.
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  • 文章类型: Journal Article
    抗菌肽(AMPs)在不同的领域是有前途的分子,包括水产养殖。AMP对多种病原体具有裂解作用,导致水产养殖中传统抗菌剂的潜在替代品。此外,它们对宿主免疫反应也有调节作用。因此,这项工作的目的是评估三种来自欧洲鲈鱼的已知合成AMP的免疫调节能力,NK-赖氨酸(Nkl),铁调素(Hamp),和双entracin(Dic),在来自欧洲鲈鱼和金头鲈鱼的头肾细胞悬浮液中。所测试的肽对欧洲鲈鱼和金头鲈鱼细胞均无细胞毒性,并且无法调节呼吸爆发和吞噬作用。然而,他们在两个物种中不同地改变了免疫相关基因的转录模式。肽能够促进抗炎标记基因的表达(il10),抗病毒(mx,irf3),细胞介导的细胞毒性(nccrp1,gzmb),和欧洲鲈鱼的抗体反应(ighm),Nkl肽是最有效的。与此相反,这些肽对金头虾的作用主要导致免疫反应的抑制。最后,欧洲鲈鱼衍生肽可以被认为是欧洲鲈鱼养殖场免疫刺激的潜在工具,但是需要更多的努力才能在其他物种中普遍使用它们。
    Antimicrobial peptides (AMPs) are promising molecules in diverse fields, including aquaculture. AMPs possess lytic effects on a wide range of pathogens, resulting in a potential replacement for traditional antimicrobials in aquaculture. In addition, they also have modulatory effects on host immune responses. Thus, the objective of this work was to evaluate the immunomodulatory capability of three known synthetic AMPs derived from European sea bass, NK-lysin (Nkl), hepcidin (Hamp), and dicentracin (Dic), in head-kidney cell suspensions from European sea bass and gilthead seabream. The tested peptides were neither cytotoxic for European sea bass nor gilthead seabream cells and failed to modulate the respiratory burst and phagocytosis activities. However, they modified the pattern of transcription of immune-related genes differently in both species. Peptides were able to promote the expression of marker genes for anti-inflammatory (il10), antiviral (mx, irf3), cell-mediated cytotoxicity (nccrp1, gzmb), and antibody responses (ighm) in European sea bass, with the Nkl peptide being the most effective. Contrary to this, the effects of those peptides on gilthead seabream mainly resulted in the suppression of immune responses. To conclude, European sea bass-derived peptides can be postulated as potential tools for immunostimulation in European sea bass fish farms, but more efforts are required for their universal use in other species.
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  • 文章类型: Journal Article
    发挥多种功能的抗菌肽(AMP)被认为是对抗细菌耐药性危机的有希望的候选者。如今,靶向肽修饰已被广泛认为可以提高生物活性并弥补临床应用中的缺陷如毒性。在这项研究中,从武义洪蛙的皮肤分泌物中分离并鉴定了一种螺旋环肽,即,拉纳图林-2-AW(R2AW)(GFMDTAKNVAKNVAATLLDKLKCKITGGC)。对R2AW进行靶标修饰以研究结构-活性关系并优化其生物活性。通过残基取代和截短逐步设计了五种类似物,并评估了抗菌和抗癌活性。我们发现,丝氨酸取代和环状结构域缺失产物显示出与天然肽R2AW相似的抗菌活性,这意味着二硫化物桥和Rana盒对于Ranatuerin-2肽的抗菌活性是可有可无的。值得注意的是,阳离子和疏水性增强变体,[Lys4,19,Leu20]R2AW(1-22)-NH2表现出显著优化的抗菌和抗癌活性。此外,它以高效的速度通过破坏细胞膜杀死细菌。此外,[Lys4,19,Leu20]R2AW(1-22)-NH2在耐甲氧西林金黄色葡萄球菌(MRSA)感染的蜡虫模型中发挥了潜在的体内功效。总的来说,这项研究证明了一些合理的设计思想,可以优化ranatuerin-2肽的双重抗菌和抗癌活性,并提出[Lys4,19,Leu20]R2AW(1-22)-NH2作为治疗开发的有吸引力的候选药物。
    Antimicrobial peptides (AMPs) that exert multiple functions are considered promising candidates to combat the bacterial drug resistance crisis. Nowadays, targeted peptide modification has been widely recognised to improve biological activity and make up for deficiencies in clinical applications such as toxicity. In this study, a helix-loop peptide was isolated and identified from the skin secretion of the Wuyi torrent frog Amolops wuyiensis, namely, ranatuerin-2-AW (R2AW) (GFMDTAKNVAKNVAATLLDKLKCKITGGC). Target modifications were made to R2AW to study the structure-activity relationships and to optimise its bioactivities. Five analogues were progressively designed via residue substitution and truncation and the antibacterial and anticancer activities were evaluated. We found that the serine-substitution and cyclic-domain-deletion products showed similar antibacterial activity to the natural peptide R2AW, implying that the disulphide bridge and Rana box were dispensable for the antibacterial activity of ranatuerin-2 peptides. Notably, the cationicity- and hydrophobicity-enhanced variant, [Lys4,19, Leu20]R2AW(1-22)-NH2, exhibited significantly optimised antibacterial and anticancer activities. Additionally, it killed bacteria by membrane disruption at a highly efficient rate. Moreover, [Lys4,19, Leu20]R2AW(1-22)-NH2 exerted potential in vivo efficacy in a methicillin-resistant Staphylococcus aureus (MRSA)-infected waxworm model. Overall, this study demonstrated some rational design ideas for optimising the dual antibacterial and anticancer activities of ranatuerin-2 peptides and it proposes [Lys4,19, Leu20]R2AW(1-22)-NH2 as an appealing candidate for therapeutic development.
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  • 文章类型: Journal Article
    这项研究通过利用阳离子抗菌肽(CAMPs)和细胞穿透肽(CPPs)的独特特性,探索了抗肿瘤剂5-FU在癌细胞中的有效性。传统的抗癌疗法面临很大的局限性,包括不利的药代动力学特征和对肿瘤部位的特异性不足。这些缺点通常需要更高的治疗剂剂量,导致正常细胞的严重毒性和不良副作用。肽已经成为靶向药物递送的有希望的载体,具有选择性地将治疗剂递送到表达特定受体的细胞的能力。这增强了细胞内药物递送,最大限度地减少耐药性,并降低毒性。在这项研究中,我们全面评估ADMET(吸收,分布,新陈代谢,排泄,和毒性)各种AMP和CPPs的特性,以深入了解其作为抗癌剂的潜力。肽合成涉及使用Liberty微波肽合成仪的固相合成。通过LC-MS和HPLC方法确认肽纯度。对于ADMET筛选,采用了计算工具,评估吸收等参数,分布,新陈代谢,排泄,和毒性。培养细胞系A549和UM-UC-5并用5-FU处理,凸轮,和CPPs。使用MTT测定法测量细胞活力。理化性质分析揭示了良好的药物相似性属性。这些肽对CYP3A4表现出潜在的抑制活性。ADMET预测表明可变的吸收和分布特征。此外,我们评估了这些肽单独和与5-FU组合的有效性,一种广泛使用的抗肿瘤剂,在两种不同的癌细胞系中,UM-UC-5和A549。我们的发现表明,CAMPs可以显着降低A549细胞的细胞活力,而CPPs在UM-UC-5细胞中表现出有希望的结果。了解这些多方面的影响可以为抗病毒和抗癌研究开辟新的途径。Further,实验验证是必要的,以确认这些肽的作用机制,特别是与5-FU结合使用。
    This study explores the effectiveness of the antineoplastic agent 5-FU in cancer cells by leveraging the unique properties of cationic antimicrobial peptides (CAMPs) and cell-penetrating peptides (CPPs). Traditional anticancer therapies face substantial limitations, including unfavorable pharmacokinetic profiles and inadequate specificity for tumor sites. These drawbacks often necessitate higher therapeutic agent doses, leading to severe toxicity in normal cells and adverse side effects. Peptides have emerged as promising carriers for targeted drug delivery, with their ability to selectively deliver therapeutics to cells expressing specific receptors. This enhances intracellular drug delivery, minimizes drug resistance, and reduces toxicity. In this research, we comprehensively evaluate the ADMET (absorption, distribution, metabolism, excretion, and toxicity) properties of various AMPs and CPPs to gain insights into their potential as anticancer agents. The peptide synthesis involved a solid-phase synthesis using a Liberty Microwave Peptide Synthesizer. The peptide purity was confirmed via LC-MS and HPLC methods. For the ADMET screening, computational tools were employed, assessing parameters like absorption, distribution, metabolism, excretion, and toxicity. The cell lines A549 and UM-UC-5 were cultured and treated with 5-FU, CAMPs, and CPPs. The cell viability was measured using the MTT assay. The physicochemical properties analysis revealed favorable drug-likeness attributes. The peptides exhibited potential inhibitory activity against CYP3A4. The ADMET predictions indicated variable absorption and distribution characteristics. Furthermore, we assessed the effectiveness of these peptides alone and in combination with 5-FU, a widely used antineoplastic agent, in two distinct cancer cell lines, UM-UC-5 and A549. Our findings indicate that CAMPs can significantly reduce the cell viability in A549 cells, while CPPs exhibit promising results in UM-UC-5 cells. Understanding these multifaceted effects could open new avenues for antiviral and anticancer research. Further, experimental validation is necessary to confirm the mechanism of action of these peptides, especially in combination with 5-FU.
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