African Swine Fever Virus

非洲猪瘟病毒
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    文章类型: Journal Article
    由于缺乏有效的疫苗,目前非洲猪瘟病毒(ASFV)的控制措施和根除策略依赖于早期发现和严格的淘汰程序。在本研究中,我们开发了两个独立的等温扩增试验,即,环介导等温扩增(LAMP)和聚合酶螺旋反应(PSR),用于临床样品中ASFV基因组的快速可视化。此外,开发了基于实时定量PCR(qRT-PCR)的水解探针测定法,用于与开发的等温测定法进行灵敏度比较评估。LAMP的分析灵敏度,PSR,和qRT-PCR被发现是2.64×105拷贝/微升,2.64×102拷贝/微升,和2.64×101拷贝/微升,分别。使用开发的视觉测定法测试了总共165个临床样品。相对精度,相对特异性,LAMP与PSR的相对诊断灵敏度分别为95.37%和102.48%,97.46%vs101.36%,73.33%和113.33%,分别。
    Owing to the lack of effective vaccines, current control measures and eradication strategies for the African swine fever virus (ASFV) rely on early detection and stringent stamping-out procedures. In the present study, we developed two independent isothermal amplification assays, namely, loop-mediated isothermal amplification (LAMP) and polymerase spiral reaction (PSR), for quick visualization of the ASFV genome in clinical samples. Additionally, a quantitative real-time PCR (qRT-PCR)-based hydrolysis probe assay was developed for comparative assessment of sensitivity with the developed isothermal assays. The analytical sensitivity of the LAMP, PSR, and qRT-PCR was found to be 2.64 ×105 copies/µL, 2.64 ×102 copies/µL, and 2.64 ×101 copies/µL, respectively. A total of 165 clinical samples was tested using the developed visual assays. The relative accuracy, relative specificity, and relative diagnostic sensitivity for LAMP vs PSR were found to be 95.37% vs 102.48%, 97.46% vs 101.36%, and 73.33% vs 113.33%, respectively.
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  • 文章类型: Journal Article
    背景:非洲猪瘟(ASF)是一种高度传染性和严重出血性疾病,死亡率接近100%。几项研究表明,由于ASFVDNA的鉴定,非叮咬性双翅目动物在猪场ASFV传播中的潜在意义。然而,根据我们的知识,尚无研究评估在爆发场收集的非叮咬双翅目动物的病毒DNA载量,也未分析任何危险因素.在这种情况下,我们的研究旨在分析与病毒DNA的存在和载量相关的与ASF暴发收集的非叮咬性双翅目动物存在相关的危险因素.
    方法:后院农场(BF),A型农场(TAF),和商业农场(CF),目标是在2020年进行抽样。2021年,没有对BF进行采样。每个农场只取样一次。收集到的苍蝇给家人的鉴定,属,或物种水平是根据形态特征使用特定的键和描述进行的。在DNA提取之前制备池。使用实时PCR方案测试所有提取的DNA中ASFV的存在。对于这项研究,我们认为CT值为40的样本为阳性.使用EpiInfo7软件(CDC,美国)。
    结果:所有收集到的非叮咬蝇属于五个家族:Calliphoridae,Sarcophagidae,Fanniidae,果蝇科,和Muscidae。在361个池中,201对ASFVDNA的存在呈阳性。所获得的阳性样品的CT值范围为21.54至39.63,中值为33.59,平均值为33.56。显著较低的CT值(对应于较高的病毒DNA载量)在食肉科中获得,平均值为32.56;8月份注意到阳性池的数量明显更高,平均值=33.12。
    结论:我们的研究带来了令人信服的证据,证明在携带ASFVDNA的家养猪场附近存在最常见的同人蝇,强调加强预防昆虫生命周期和分布的生物安全措施和协议的重要性。
    BACKGROUND: African swine fever (ASF) is a highly contagious and severe haemorrhagic disease of Suidae, with mortalities that approach 100 percent. Several studies suggested the potential implication of non-biting dipterans in the spread of ASFV in pig farms due to the identification of the ASFV DNA. However, to our knowledge, no study has evaluated the viral DNA load in non-biting dipterans collected in outbreak farms and no risk factors have been analysed. In this context, our study aimed to analyse the risk factors associated with the presence of non-biting dipterans collected from ASF outbreaks in relation to the presence and load of viral DNA.
    METHODS: Backyard farms (BF), type A farms (TAF), and commercial farms (CF), were targeted for sampling in 2020. In 2021, no BF were sampled. Each farm was sampled only once. The identification of the collected flies to family, genus, or species level was performed based on morphological characteristics using specific keys and descriptions. Pools were made prior to DNA extraction. All extracted DNA was tested for the presence of the ASFV using a real-time PCR protocol. For this study, we considered every sample with a CT value of 40 as positive. The statistical analysis was performed using Epi Info 7 software (CDC, USA).
    RESULTS: All collected non-biting flies belonged to five families: Calliphoridae, Sarcophagidae, Fanniidae, Drosophilidae, and Muscidae. Of the 361 pools, 201 were positive for the presence of ASFV DNA. The obtained CT values of the positive samples ranged from 21.54 to 39.63, with a median value of 33.59 and a mean value of 33.56. Significantly lower CT values (corresponding to higher viral DNA load) were obtained in Sarcophagidae, with a mean value of 32.56; a significantly higher number of positive pools were noticed in August, mean value = 33.12.
    CONCLUSIONS: Our study brings compelling evidence of the presence of the most common synanthropic flies near domestic pig farms carrying ASFV DNA, highlighting the importance of strengthening the biosecurity measures and protocols for prevention of the insect life cycle and distribution.
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  • 文章类型: Journal Article
    对动物饲料和饲料成分中的病毒没有微生物监管限制。
    在本研究中提出了一种性能目标(PO)以制造不存在任何感染性病毒颗粒的喷雾干燥猪血浆(SDPP)批次。对于三个批次大小(10、15和20吨),估计SDPP中的-7.0、-7.2和-7.3logTCID50/g的PO水平。
    对原始猪血浆中猪流行性腹泻病毒(PEDV)的存在进行的基线调查显示,使用TCID50-qPCR衍生的标准曲线计算的浓度为-1.0±0.6logTCID50/mL。在临床前情况下(从无症状和未检测到的病毒血症猪收集),原始血浆中的平均非洲猪瘟病毒(ASFV)浓度估计为0.6logHAD50/mL(0.1-1.4,95%CI)。评估了不同的处理方案(基线:喷雾干燥+延长储存)和基线+紫外线(UV)辐射,以满足本研究中提出的PO水平。通过使用不同的批次大小,基线和基线+UV处理方案在实现PEDV的PO中>95%和100%有效。对于临床前方案期间SDPP中的ASFV,对于所有评估的处理方案,PO合规性为100%。需要进一步的研究来确定饲料储存中病毒灭活的潜在机制,以进一步推进全球饲料安全风险管理工作的实施。
    UNASSIGNED: There are no microbiological regulatory limits for viruses in animal feed and feed ingredients.
    UNASSIGNED: A performance objective (PO) was proposed in this study to manufacture a spray-dried porcine plasma (SDPP) batch absent of any infectious viral particles. The PO levels of -7.0, -7.2, and -7.3 log TCID50/g in SDPP were estimated for three batch sizes (10, 15, and 20 tons).
    UNASSIGNED: A baseline survey on the presence of porcine epidemic diarrhea virus (PEDV) in raw porcine plasma revealed a concentration of -1.0 ± 0.6 log TCID50/mL as calculated using a TCID50-qPCR derived standard curve. The mean African swine fever virus (ASFV) concentration in raw plasma was estimated to be 0.6 log HAD50/mL (0.1-1.4, 95% CI) during a pre-clinical scenario (collected from asymptomatic and undetected viremic pigs). Different processing scenarios (baseline: spray-drying + extended storage) and baseline + ultraviolet (UV) radiation were evaluated to meet the PO levels proposed in this study. The baseline and baseline + UV processing scenarios were >95 and 100% effective in achieving the PO for PEDV by using different batch sizes. For the ASFV in SDPP during a pre-clinical scenario, the PO compliance was 100% for all processing scenarios evaluated. Further research is needed to determine the underlying mechanisms of virus inactivation in feed storage to further advance the implementation of feed safety risk management efforts globally.
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  • 文章类型: Journal Article
    非洲猪瘟(ASF)是一种急性,出血性,由非洲猪瘟病毒(ASFV)引起的猪的高度传染性疾病。我们先前的研究确定ASFVMGF300-2R蛋白作为毒力因子起作用,并发现MGF300-2R通过选择性自噬降解IKKβ。然而,在自噬降解过程中负责IKKβ泛素化的E3泛素连接酶仍然未知。为了解决这个问题,我们首先通过免疫沉淀-质谱法提取了328种与MGF300-2R相互作用的蛋白质。接下来,我们分析并证实了E3泛素连接酶TRIM21和MGF300-2R之间的相互作用,并证明了TRIM21在IKKβ泛素化中的催化作用。最后,我们表明MGF300-2R对IKKβ的降解依赖于TRIM21。总之,我们的结果表明TRIM21是参与MGF300-2R降解IKKβ的E3泛素连接酶,从而增强我们对MGF300-2R功能的理解,并提供对减毒活疫苗的合理设计和针对ASF的抗病毒策略的见解。
    African swine fever (ASF) is an acute, hemorrhagic, highly contagious disease in pigs caused by African swine fever virus (ASFV). Our previous study identified that the ASFV MGF300-2R protein functions as a virulence factor and found that MGF300-2R degrades IKKβ via selective autophagy. However, the E3 ubiquitin ligase responsible for IKKβ ubiquitination during autophagic degradation still remains unknown. In order to solve this problem, we first pulled down 328 proteins interacting with MGF300-2R through immunoprecipitation-mass spectrometry. Next, we analyzed and confirmed the interaction between the E3 ubiquitin ligase TRIM21 and MGF300-2R and demonstrated the catalytic role of TRIM21 in IKKβ ubiquitination. Finally, we indicated that the degradation of IKKβ by MGF300-2R was dependent on TRIM21. In summary, our results indicate TRIM21 is the E3 ubiquitin ligase involved in the degradation of IKKβ by MGF300-2R, thereby augmenting our understanding of the functions of MGF300-2R and offering insights into the rational design of live attenuated vaccines and antiviral strategies against ASF.
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  • 文章类型: Journal Article
    非洲猪瘟(ASF)是一种传染性病毒性疾病,影响猪和野猪。它通常表现为出血热,但也可以以各种形式表现,从急性到无症状。ASF在全球范围内广泛传播,对养猪业产生重大影响。ASFV基因组的复杂和高度可变的特征使得疫苗开发和疾病监测极其困难。ASFV进化的总体趋势是毒力降低和传播性增加。基因突变等因素,病毒重组,毒力相关基因的毒株特异性促进病毒变异。本文深入探讨了这些因素对病毒免疫逃避的影响,致病性,以及随之而来的疫苗开发中遇到的复杂性,疾病检测,和监视。本综述的最终目标是深入探索ASFV的遗传进化模式和变异机制。为疫苗和诊断技术的进步提供了理论基础。
    African swine fever (ASF) is a contagious viral disease affecting pigs and wild boars. It typically presents as a hemorrhagic fever but can also manifest in various forms, ranging from acute to asymptomatic. ASF has spread extensively globally, significantly impacting the swine industry. The complex and highly variable character of the ASFV genome makes vaccine development and disease surveillance extremely difficult. The overall trend in ASFV evolution is towards decreased virulence and increased transmissibility. Factors such as gene mutation, viral recombination, and the strain-specificity of virulence-associated genes facilitate viral variations. This review deeply discusses the influence of these factors on viral immune evasion, pathogenicity, and the ensuing complexities encountered in vaccine development, disease detection, and surveillance. The ultimate goal of this review is to thoroughly explore the genetic evolution patterns and variation mechanisms of ASFV, providing a theoretical foundation for advancement in vaccine and diagnostic technologies.
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  • 文章类型: Journal Article
    由βT细胞表达的βT细胞受体(TRB)对于外来抗原识别是必需的。TRB基因座含有编码三个互补决定区(CDR)的TRBV家族。CDR1与抗原识别和与MHC分子的相互作用相关。与家猪相比,非洲猪缺乏跨越TRBV27基因外显子1和2的284bp片段,该片段包含编码CDR1的序列。在这项研究中,我们以非洲猪瘟病毒(ASFV)为例,研究了删除TRBV27编码的CDR1对家猪对外来病原体的抗性的影响。我们首先使用CRISPR/Cas9技术成功地产生了TRBV27编辑的成纤维细胞,并破坏了CDR1序列,并将它们用作供体细胞,通过体细胞核移植产生基因编辑的猪。选择TRBV编辑和野生型猪进行同步ASFV感染。在ASFV感染之前,转基因猪的白细胞显着减少。转基因猪和野生型猪对ASFV易感,并表现出典型的发烧(>40°C)。然而,TRBV27编辑猪的病毒载量高于野生型猪.与此一致,基因编辑的猪比野生型猪表现出更多的临床症状。此外,两组猪在10天内死亡,并在器官和组织中显示出相似的严重病变。需要使用较低毒力的ASFV分离株进行未来研究,以确定相对较长时期内TRBV27基因与猪中ASFV感染之间的关系。
    The beta T-cell receptor (TRB) expressed by beta T cells is essential for foreign antigen recognition. The TRB locus contains a TRBV family that encodes three complementarity determining regions (CDRs). CDR1 is associated with antigen recognition and interactions with MHC molecules. In contrast to domestic pigs, African suids lack a 284-bp segment spanning exons 1 and 2 of the TRBV27 gene that contains a sequence encoding CDR1. In this study, we used the African swine fever virus (ASFV) as an example to investigate the effect of deleting the TRBV27-encoded CDR1 on the resistance of domestic pigs to exotic pathogens. We first successfully generated TRBV27-edited fibroblasts with disruption of the CDR1 sequence using CRISPR/Cas9 technology and used them as donor cells to generate gene-edited pigs via somatic cell nuclear transfer. The TRBV-edited and wild-type pigs were selected for synchronous ASFV infection. White blood cells were significantly reduced in the genetically modified pigs before ASFV infection. The genetically modified and wild-type pigs were susceptible to ASFV and exhibited typical fevers (>40 °C). However, the TRBV27-edited pigs had a higher viral load than the wild-type pigs. Consistent with this, the gene-edited pigs showed more clinical signs than the wild-type pigs. In addition, both groups of pigs died within 10 days and showed similar severe lesions in organs and tissues. Future studies using lower virulence ASFV isolates are needed to determine the relationship between the TRBV27 gene and ASFV infection in pigs over a relatively long period.
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  • 文章类型: Journal Article
    AFSV的高度保守的C129R蛋白被用于开发ASFV重组腺病毒疫苗,具有很强的免疫原性。在这项研究中,我们通过皮下注射10μg纯化的C129R蛋白免疫了6周龄的雌性C57BL/6J小鼠。使用ELISA评估体液和细胞免疫效果,流式细胞术,和ELISpot测定。此外,合成了C129R蛋白的19个肽并进行了生物信息学筛选。使用ELISpot筛选阳性T细胞表位。结果表明,与对照小鼠相比,免疫小鼠中CD4+和CD8+T淋巴细胞的比例更高。ELISA分析显示实验组小鼠的血清滴度约为1:1,638,400。此外,肽C11(53-61aa),C14(81-89aa),C16(97-105aa),来自C129R蛋白的C18(116-124aa)能够激活小鼠脾淋巴细胞以产生IFN-γ。这些发现表明C129R蛋白显着增强免疫小鼠的体液和细胞免疫。此外,肽C11、C14、C16和C18可用作C129R蛋白的潜在T细胞表位。这些结果为进一步探索ASFVC129R蛋白和鉴定新型ASF疫苗抗原奠定了基础。
    The highly conserved C129R protein of AFSV was utilized in the development of an ASFV recombinant adenovirus vaccine, demonstrating strong immunogenicity. In this study, we immunized 6-week-old female C57BL/6J mice via subcutaneous injection with 10 μg of purified C129R protein. Humoral and cellular immune effects were assessed using ELISA, flow cytometry, and ELISpot assays. Additionally, 19 peptides of the C129R protein were synthesized and screened for the use of bioinformatics. Positive T-cell epitopes were screened using ELISpot. The results indicated a higher proportion of CD4+ and CD8+ T lymphocytes in immunized mice compared to control mice. ELISA analysis revealed a serum titer of approximately 1:1, 638, 400 in the experimental group of mice. Additionally, peptides C11(53-61aa), C14(81-89aa), C16(97-105aa), and C18(116-124aa) from the C129R protein were able to activate mice spleen lymphocytes to produce IFN-γ. These findings suggest that the C129R protein significantly enhances both humoral and cellular immunity in immunized mice. Moreover, peptides C11, C14, C16, and C18 may serve as potential T-cell epitopes for the C129R protein. These results lay the groundwork for the further exploration of ASFV C129R protein and the identification of novel ASF vaccine antigens.
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  • 文章类型: Journal Article
    非洲猪瘟病毒(ASFV)是一种带有包膜的双链DNA病毒。ASFV几乎是所有DNA病毒中最大的基因组,其免疫逃避机制复杂。更好地了解ASFV基因的分子机制将改善疫苗设计。A238L,ASFV的一种非结构蛋白,通过抑制p300的HAT活性来抑制NF-κB的激活。A238L是否也影响IRF3的转录活性仍有待探索。在这里,我们首先证实了A238L在L929细胞中抑制NF-κB活性的能力。A238L抑制促炎细胞因子基因的表达。相比之下,A238L增加了三种不同细胞系中TBK1和IRF3的磷酸化水平。A238L增加IRF3驱动的启动子活性并诱导IRF3核易位。此外,A238L增强先天抗病毒免疫在不存在或存在的聚d(A:T)或聚(I:C)刺激,或单纯疱疹病毒1型(HSV-1)或仙台病毒(SeV)感染。这项研究揭示了A238L在通过TBK1-IRF3途径激活促进抗病毒免疫应答中的先前未识别的作用。
    African swine fever virus (ASFV) is a double-stranded DNA virus with an envelope. ASFV has almost the largest genome among all DNA viruses, and its mechanisms of immune evasion are complex. Better understanding of the molecular mechanisms of ASFV genes will improve vaccine design. A238L, a nonstructural protein of ASFV, inhibits NF-κB activation by suppressing the HAT activity of p300. Whether A238L also affects the transcriptional activity of IRF3 remains unexplored. Here we first confirmed the ability of A238L to suppress NF-κB-activity in L929 cells. A238L inhibits the expression of proinflammatory cytokine genes. In contrast, A238L increased the phosphorylation levels of TBK1 and IRF3 in three different cell lines. A238L increases the IRF3-driven promoter activity and induces IRF3 nuclear translocation. Furthermore, A238L enhanced innate antiviral immunity in the absence or presence of poly d (A:T) or poly (I:C) stimulation, or herpes simplex virus type 1 (HSV-1) or Sendai virus (SeV) infection. This study reveals a previously unrecognized role of A238L in promoting antiviral immune responses by TBK1-IRF3 pathway activation.
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  • 文章类型: Journal Article
    自2019年非洲猪瘟(ASF)在韩国得到确认以来,其蔓延,主要是野猪,一直是一个重大问题。这种情况的一个关键因素是缺乏通过监测偏差识别风险因素。独特的地形,以高山为特征,使搜索工作复杂化,导致病例发现被忽视或延误,并对养猪业构成风险。此外,与邻国共享的河流持续存在病毒进入的威胁。本研究采用地理空间分析和统计方法,以1)确定发生ASF的高风险区域,但可能受到监视,和2)指出战略监测点,以监测ASF病毒通过水体和流域影响进入的风险。Pearsonrho检验表明,海拔(rho=-0.908,p值<0.001)和与道路的距离(rho=-0.979,p值<0.001)可能对限制监测活动产生重大影响。考虑到这些结果,创建了潜在的受监控区域图,并通过卡方拟合优度检验(X平方=208.03,df=1,p值<0.001)进行了验证。ASF阳性野猪与水源距离之间的强负相关(rho=-0.997,p值<0.001)强调了河流周围地区是监测的重点地区之一。随后的水文分析为监测病毒从邻国通过水进入的风险提供了重要的要点。这项研究旨在促进早期发现并防止ASF的进一步传播。
    Since the confirmation of African swine fever (ASF) in South Korea in 2019, its spread, predominantly in wild boars, has been a significant concern. A key factor in this situation is the lack of identification of risk factors by surveillance bias. The unique orography, characterized by high mountains, complicates search efforts, leading to overlooked or delayed case detection and posing risks to the swine industry. Additionally, shared rivers with neighboring country present a continual threat of virus entry. This study employs geospatial analysis and statistical methods to 1) identify areas at high risk of ASF occurrence but possibly under-surveilled, and 2) indicate strategic surveillance points for monitoring the risk of ASF virus entry through water bodies and basin influences. Pearson\'s rho test indicated that elevation (rho = -0.908, p-value < 0.001) and distance from roads (rho = -0.979, p-value < 0.001) may have a significant impact on limiting surveillance activities. A map of potential under-surveilled areas was created considering these results and was validated by a chi-square goodness-of-fit test (X-square = 208.03, df = 1, p-value < 0.001). The strong negative correlation (rho = -0.997, p-value <0.001) between ASF-positive wild boars and distance from water sources emphasizes that areas surrounding rivers are one of the priority areas for monitoring. The subsequent hydrological analyses provided important points for monitoring the risk of virus entry via water from the neighboring country. This research aims to facilitate early detection and prevent further spread of ASF.
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  • 文章类型: Journal Article
    将非洲猪瘟病毒(ASFV)分离株分组并通过分析其中心可变区(CVR)序列进行跟踪。在这项研究中,分析了2018年至2022年间从俄罗斯不同地区收集的70株ASFV分离株的序列。基于CVR序列的分析表明,这些分离株属于三个不同的组。第1组与格鲁吉亚分离物2007/1共享100%序列同一性。第5组在601位具有C>A单核苷酸多态性(SNP),而第13组是俄罗斯远东地区新的且独特的,有五个来自阿穆尔河的分离株,哈巴罗夫斯克,和滨海边疆区。这些发现证明了一种基于CVR的基因型II内ASFV分离株的系统基因组学和分类研究的新方法。
    African swine fever virus (ASFV) isolates are grouped and tracked through analysis of their central variable region (CVR) sequences. In this study, sequences of 70 ASFV isolates collected from different regions of Russia between 2018 and 2022 were analyzed. The analysis based on the CVR sequences indicated that the isolates belonged to three distinct groups. Group 1 shared 100% sequence identity to the isolate Georgia 2007/1. Group 5 had a C > A single-nucleotide polymorphism (SNP) at position 601, while group 13 is new and unique to the Far East of Russia, with five isolates from the Amur, Khabarovsk, and Primorsky regions. These findings demonstrate a new approach to phylogenomics and cladistics of ASFV isolates within genotype II on the basis of the CVR.
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