Affinity

亲和力
  • 文章类型: Journal Article
    在核毒理学领域,为了阐明其毒性机理并进一步开发选择性脱孔剂,对the系元素(An)与生物分子相互作用的知识至关重要。在这项工作中,我们证明了亲水相互作用液相色谱(HILIC)分离极性钍(Th)仿生肽复合物的巨大潜力,作为应对这些挑战的关键起点。Th4用作钚(Pu4)类似物,pS16和pS1368用作合成的二-和四-磷酸化肽,能够模拟骨桥蛋白(OPN)中这些An的相互作用位点,一种过度磷酸化的蛋白质.目的是确定pS16和pS1368对Th4的相对亲和力,并评估在生理pH下Th4与UO22进行竞争络合反应时pS1368的选择性。为了实现这些目标,同时将HILIC与电喷雾电离质谱(ESI-MS)和电感耦合等离子体质谱(ICP-MS)联用,这允许在线鉴定分离的复合物的分子结构并量化它们,在一个单一的步骤。首先建立专用的HILIC条件以分离具有良好分离分辨率的新的二聚体Th2(肽)2复合物(肽=pS16或pS1368)。通过相对于Th4+以不同比例添加pS16和pS1368,我们发现pS16相对于pS1368的较低或相等比例不足以从Th2pS13682取代pS1368,pS16比例高于pS1368导致形成主要的三元络合物Th2(pS16)(pS1368),证明Th4+优先结合四磷酸化肽。最后,当Th4+和UO22+相对于pS1368以等摩尔比例混合时,形成的复合物的在线鉴定和定量表明,尽管pS1368被专门设计为协调UO22+,pS1368也是Th4+选择性的,并且对后者表现出比对UO22+更强的亲和力。因此,通过这种方法收集的结果突出了Th4配位化学对其与pS1368相互作用以及更广泛地对其对生物分子的亲和力的影响。
    In the field of nuclear toxicology, the knowledge of the interaction of actinides (An) with biomolecules is of prime concern in order to elucidate their toxicity mechanism and to further develop selective decorporating agents. In this work, we demonstrated the great potential of hydrophilic interaction liquid chromatography (HILIC) to separate polar thorium (Th) biomimetic peptide complexes, as a key starting point to tackle these challenges. Th4+ was used as plutonium (Pu4+) analogue and pS16 and pS1368 as synthetic di- and tetra-phosphorylated peptides capable of mimicking the interaction sites of these An in osteopontin (OPN), a hyperphosphorylated protein. The objective was to determine the relative affinity of pS16 and pS1368 towards Th4+, and to evaluate the pS1368 selectivity when Th4+ was in competition complexation reaction with UO22+ at physiological pH. To meet these aims, HILIC was simultaneously coupled to electrospray ionization mass spectrometry (ESI-MS) and inductively coupled plasma mass spectrometry (ICP-MS), which allowed to identify online the molecular structure of the separated complexes and quantify them, in a single step. Dedicated HILIC conditions were firstly set up to separate the new dimeric Th2(peptide)2 complexes with good separation resolution (peptide = pS16 or pS1368). By adding pS16 and pS1368 in different proportions relatively to Th4+, we found that lower or equal proportions of pS16 with respect to pS1368 were not sufficient to displace pS1368 from Th2pS13682 and pS16 proportion higher than pS1368 led to the formation of a predominant ternary complex Th2(pS16)(pS1368), demonstrating preferential Th4+ binding to the tetra-phosphorylated peptide. Finally, online identification and quantification of the formed complexes when Th4+ and UO22+ were mixed in equimolar ratio relatively to pS1368 showed that in spite of pS1368 has been specifically designed to coordinate UO22+, pS1368 is also Th4+-selective and exhibits stronger affinity for this latter than for UO22+. Hence, the results gathered through this approach highlight the impact of Th4+ coordination chemistry on its interaction with pS1368 and more widely to its affinity for biomolecules.
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  • 文章类型: Journal Article
    大气冷等离子体(ACP)提出了一种有前途的方法,用于椰奶的灭菌,并表现出对椰子球蛋白(CG)的改性作用,椰奶中的主要过敏原。这项研究通过检查蛋白质结构的变化,研究了ACP治疗在减轻椰子汁变应原性方面的潜在作用。ACP治疗引起CG结构改变,破坏与免疫球蛋白E(IgE)的结合位点。因此,这导致CG和IgE之间的亲和力降低,Ka从2.17×104/M下降到0.64×104/M,从而减少IgE介导的过敏反应。来自变应原和细胞模型的发现进一步证实,ACP治疗使CG的变应原性降低了55.18%,同时抑制脱粒和过敏介质的释放。这项研究提出了一种生产低过敏性椰奶的创新方法,从而扩大了ACP技术在食品工业中的适用性。
    Atmospheric cold plasma (ACP) presents a promising method for the sterilization of coconut milk and exhibits a modifying effect on coconut globulin (CG), the primary allergen in coconut milk. This study investigated the potential role of ACP treatment in mitigating the allergenic properties of coconut milk by examining changes in protein structure. ACP treatment induced structural alterations in CG, disrupting binding sites with immunoglobulin E (IgE). Consequently, this led to a reduction in the affinity between CG and IgE, evidenced by a decrease in Ka from 2.17 × 104/M to 0.64 × 104/M, thereby diminishing IgE-mediated allergic reactions. The findings from allergenic and cellular models further corroborated that ACP treatment decreased the allergenicity of CG by 55.18%, while inhibiting degranulation and the release of allergic mediators. This study presents an innovative methodology for producing hypoallergenic coconut milk, thereby expanding the applicability of ACP technology within the food industry.
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  • 文章类型: Journal Article
    抗体对免疫传感界面的有效附着是决定免疫传感器检测性能的关键因素。因此,本研究旨在研究一种新型的低分子量抗体固定化材料,高稳定性,和优异的定向固定效果。在这项研究中,我们使用基于ZDOCK算法的分子对接技术来虚拟筛选抗体Fc段的DNA功能配体(DNAFL)。通过对DNAFL与IgG抗体界面的关键结合位点和接触倾向的综合分析,我们已经获得了对亲和力关系的宝贵见解,以及控制该界面上氨基酸和核苷酸相互作用的原理。此外,进行了分子亲和力实验和竞争性结合实验,以验证DNAFL与IgG抗体的结合能力及其实际结合位点。通过使用多碱基序列的亲和力实验,我们鉴定了显著影响抗体-DNAFL结合的碱基,并成功获得了对IgGFc片段亲和力增强的DNAFL.这些发现为高亲和力DNAFL的靶向设计提供了理论基础,同时也为免疫传感器的制备提供了新的技术方法,在生物检测中具有潜在的应用前景。
    The effective attachment of antibodies to the immune sensing interface is a crucial factor that determines the detection performance of immunosensors. Therefore, this study aims to investigate a novel antibody immobilization material with low molecular weight, high stability, and excellent directional immobilization effect. In this study, we employed molecular docking technology based on the ZDOCK algorithm to virtually screen DNA functional ligands (DNAFL) for the Fc segment of antibodies. Through a comprehensive analysis of the key binding sites and contact propensities at the interface between DNAFL and IgG antibody, we have gained valuable insights into the affinity relationship, as well as the principles governing amino acid and nucleotide interactions at this interface. Furthermore, molecular affinity experiments and competitive binding experiments were conducted to validate both the binding ability of DNAFL to IgG antibody and its actual binding site. Through affinity experiments using multi-base sequences, we identified bases that significantly influence antibody-DNAFL binding and successfully obtained DNAFL with an enhanced affinity towards the IgG Fc segment. These findings provide a theoretical foundation for the targeted design of higher-affinity DNAFLs while also presenting a new technical approach for immunosensor preparation with potential applications in biodetection.
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  • 文章类型: Journal Article
    I型超敏反应,也被称为经典过敏,通过变应原交联后与肥大细胞和嗜碱性粒细胞表面上的I型FcR(FcεRI)结合的变应原特异性IgE抗体介导。这种IgE介导的细胞活化可能通过多种机制被过敏原特异性IgG阻断。包括直接中和过敏原或参与阻断IgE信号转导的抑制性受体FcγRIIb。此外,FcεRI和FcγRIIb通过IgE-IgG-过敏原免疫复合物的共同参与导致受体结合的IgE下调,导致细胞脱敏。两者,变应原特异性IgE对FcεRI的激活和变应原特异性IgG对FcγRIIb的参与是由变应原结合驱动的。在这里,我们描述了抗体亲和力与亲和力在驱动这些过程中的不同作用,并讨论了IgG亚类在抑制嗜碱性粒细胞和肥大细胞活化中的作用。
    Type I hypersensitivity, also known as classical allergy, is mediated via allergen-specific IgE antibodies bound to type I FcR (FcεRI) on the surface of mast cells and basophils upon cross-linking by allergens. This IgE-mediated cellular activation may be blocked by allergen-specific IgG through multiple mechanisms, including direct neutralization of the allergen or engagement of the inhibitory receptor FcγRIIb which blocks IgE signal transduction. In addition, co-engagement of FcεRI and FcγRIIb by IgE-IgG-allergen immune complexes causes down regulation of receptor-bound IgE, resulting in desensitization of the cells. Both, activation of FcεRI by allergen-specific IgE and engagement of FcγRIIb by allergen-specific IgG are driven by allergen-binding. Here we delineate the distinct roles of antibody affinity versus avidity in driving these processes and discuss the role of IgG subclasses in inhibiting basophil and mast cell activation.
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  • 文章类型: Journal Article
    背景:受体酪氨酸激酶样孤儿受体1(ROR1)的过表达有助于癌细胞增殖,生存和迁移,在肿瘤的发展中起着至关重要的作用。ROR1已被提出作为癌症治疗的潜在治疗靶标。本研究旨在开发新型人源化ROR1单克隆抗体并研究其抗肿瘤作用。
    方法:用免疫组织化学和流式细胞术分析肿瘤组织和细胞系中ROR1的表达。通过互补决定区(CDR)移植技术将来自小鼠杂交瘤的抗体人源化。表面等离子体共振光谱,采用ELISA测定和流式细胞术表征人源化抗体。进行了体外细胞测定和体内小鼠实验以全面评估这些抗体的抗肿瘤活性。
    结果:ROR1在肺腺癌中表达明显增高,肝癌和乳腺癌,短发夹RNA靶向ROR1显著抑制癌细胞的增殖和迁移。成功研制出两种人源化ROR1单克隆抗体,定名为h1B8和h6D4,对ROR1卵白具有较高的特异性和亲和力。此外,这两种抗体在肺癌异种移植小鼠模型中有效抑制肿瘤生长,c-Myc/Alb-cre肝癌转基因小鼠模型和MMTV-PyMT乳腺癌小鼠模型。
    结论:成功开发了两种靶向ROR1h1B8和h6D4的人源化单克隆抗体,并在体内表现出显著的抗肿瘤活性。
    BACKGROUND: Overexpression of receptor tyrosine kinase-like orphan receptor 1 (ROR1) contributes to cancer cell proliferation, survival and migration, playing crucial roles in tumor development. ROR1 has been proposed as a potential therapeutic target for cancer treatment. This study aimed to develop novel humanized ROR1 monoclonal antibodies and investigate their anti-tumor effects.
    METHODS: ROR1 expression in tumor tissues and cell lines was analyzed by immunohistochemistry and flow cytometry. Antibodies from mouse hybridomas were humanized by the complementarity-determining region (CDR) grafting technique. Surface plasmon resonance spectroscopy, ELISA assay and flow cytometry were employed to characterize humanized antibodies. In vitro cellular assay and in vivo mouse experiment were conducted to comprehensively evaluate anti-tumor activity of these antibodies.
    RESULTS: ROR1 exhibited dramatically higher expression in lung adenocarcinoma, liver cancer and breast cancer, and targeting ROR1 by short-hairpin RNAs significantly inhibited proliferation and migration of cancer cells. Two humanized ROR1 monoclonal antibodies were successfully developed, named h1B8 and h6D4, with high specificity and affinity to ROR1 protein. Moreover, these two antibodies effectively suppressed tumor growth in the lung cancer xenograft mouse model, c-Myc/Alb-cre liver cancer transgenic mouse model and MMTV-PyMT breast cancer mouse model.
    CONCLUSIONS: Two humanized monoclonal antibodies targeting ROR1, h1B8 and h6D4, were successfully developed and exhibited remarkable anti-tumor activity in vivo.
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  • 文章类型: Journal Article
    目的:由于缺乏肿瘤特异性抗原和脱靶效应,嵌合抗原受体(CAR)-T细胞对实体瘤的疗效有限。低分子量肽允许CART细胞展示几种抗原受体以减少脱靶效应。这里,我们开发了一种针对EGFR和肿瘤基质的基于肽的双特异性CAR,在多种肿瘤类型中表达。
    结果:基于肽的CAR-T细胞表现出优异的增殖,细胞毒性活性和仅被过表达EGFR的肿瘤细胞而不是低表达EGFR的正常细胞激活。在小鼠异种移植模型中,肽双特异性CART细胞可以被递送到肿瘤块的内部并且因此有效地抑制肿瘤生长。同时,它们显示出强大的扩展能力和在体内保持长期功能的特性。治疗期间,在表达较低水平EGFR的健康器官上没有观察到肿瘤外毒性。
    结论:我们的发现表明,基于肽的双特异性CART在实体瘤治疗中具有巨大的潜力,因为它具有对肿瘤和肿瘤微环境的优异靶向能力。
    OBJECTIVE: The efficacy of chimeric antigen receptor (CAR)-T cell for solid tumors is limited partially because of the lack of tumor-specific antigens and off-target effects. Low molecular weight peptides allowed CAR T cell to display several antigen receptors to reduce off-target effects. Here, we develop a peptide-based bispecific CAR for EGFR and tumor stroma, which are expressed in a variety of tumor types.
    RESULTS: The peptide-based CAR T cells show excellent proliferation, cytotoxicity activity and are only activated by tumor cells overexpressing EGFR instead of normal cells with low EGFR expressing. In mouse xenograft models, the peptide bispecific CAR T cells can be delivered into the inner of tumor masses and thus are effective in inhibiting tumor growth. Meanwhile, they show strong expansion capacity and the property of maintaining long-term function in vivo. During treatment, no off-tumor toxicity is observed on healthy organs expressing lower levels of EGFR.
    CONCLUSIONS: Our findings demonstrate that peptide-based bispecific CAR T holds great potential in solid tumor therapy due to an excellent targeting ability towards tumors and tumor microenvironment.
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  • 文章类型: Journal Article
    趋化因子受体CXCR4参与干细胞和免疫细胞的发育和迁移,但也涉及多种癌症的肿瘤进展和转移。拮抗配体(CXCL12)诱导的CXCR4信号是,因此,治疗兴趣。目前,市场上有两种小分子CXCR4拮抗剂用于动员造血干细胞。其他具有改善效力和安全性的分子正在开发用于不同适应症,包括癌症.此外,与CXCR4靶向分子AMD3100(Plerixafor)相比,靶向CXCR4的多个拮抗纳米抗体显示出相似或更好的效力,通过二价衍生物的积极结合进一步增强。在这项研究中,我们旨在比较各种多价纳米抗体形式的亲和力,这些形式可能受到亲和力的不同影响。通过融合到柔性GS-接头,人IgG1的Fc区,不同的C4bp/CLR多聚结构域,或通过与三价接头支架的定点缀合,我们产生了不同类型的多价纳米体,其价数从二价到十价不等。其中,C端融合,尤其是人类Fc,在抑制CXCL12介导的Gαi-或β-抑制素募集中,效力增加2-log倍和3-log倍最有利,分别。总的来说,我们描述了产生能够诱导受体聚集的多价和高效CXCR4拮抗纳米抗体的策略,并得出结论,与Fc尾融合导致最高的亲合力效应,而与铰链接头无关。
    The chemokine receptor CXCR4 is involved in the development and migration of stem and immune cells but is also implicated in tumor progression and metastasis for a variety of cancers. Antagonizing ligand (CXCL12)-induced CXCR4 signaling is, therefore, of therapeutic interest. Currently, there are two small-molecule CXCR4 antagonists on the market for the mobilization of hematopoietic stem cells. Other molecules with improved potencies and safety profiles are being developed for different indications, including cancer. Moreover, multiple antagonistic nanobodies targeting CXCR4 displayed similar or better potencies as compared to the CXCR4-targeting molecule AMD3100 (Plerixafor), which was further enhanced through avid binding of bivalent derivatives. In this study, we aimed to compare the affinities of various multivalent nanobody formats which might be differently impacted by avidity. By fusion to a flexible GS-linker, Fc-region of human IgG1, different C4bp/CLR multimerization domains, or via site-directed conjugation to a trivalent linker scaffold, we generated different types of multivalent nanobodies with varying valencies ranging from bivalent to decavalent. Of these, C-terminal fusion, especially to human Fc, was most advantageous with a 2-log-fold and 3-log-fold increased potency in inhibiting CXCL12-mediated Gαi- or β-arrestin recruitment, respectively. Overall, we describe strategies for generating multivalent and high-potency CXCR4 antagonistic nanobodies able to induce receptor clustering and conclude that fusion to an Fc-tail results in the highest avidity effect irrespective of the hinge linker.
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  • 文章类型: Journal Article
    T细胞受体疗法(TCR-T)已证明有效,耐用性,和某些实体瘤的安全性优势(如人乳头瘤病毒相关肿瘤,滑膜肉瘤,和黑色素瘤)。这项研究旨在为开发实体瘤的TCR-T提供仔细的考虑。因此,在这次审查中,我们总结了目前的临床应用,TCR-T模式的优势和探索的疗效/安全性相关参数,尤其是贪婪,药代动力学/药效学,和适应症,实体瘤。此外,我们调查了与亲和力相关的关键因素,包括抗原选择,T细胞受体获取,优化,和共受体接合。此外,基于目前的RNA-seq数据集,我们重新检查了肿瘤抗原的表达,以获得可能更高的实体瘤覆盖率.最后,我们已经讨论了TCR-TS的当前局限性和未来方向。
    T-cell receptor therapy (TCR-T) has demonstrated efficacy, durability, and safety advantages in certain solid tumors (such as human papillomavirus-related tumors, synovial sarcoma, and melanoma). This study aimed to provide careful considerations for developing TCR-T for solid tumors. Therefore, in this review, we have summarized the current clinical application, advantage of TCR-T modalities and explored efficacy/safety-related parameters, particularly avidity, pharmacokinetics/pharmacodynamics, and indications, for solid tumors. Furthermore, we have investigated critical factors related to avidity, including antigen selection, T-cell receptor acquisition, optimization, and co-receptor engagement. Moreover, we have re-examined the expression of tumor antigens for a potentially higher coverage rate of solid tumors based on the current RNA-seq datasets. Finally, we have discussed the current limitations and future directions of TCR-Ts.
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  • 文章类型: Journal Article
    受体理论中的一个基本错误导致了对如何估计激动剂的亲和力和功效的持久误解。在配体的结合诱导其受体的构象变化的任何情况下,这些性质是密不可分的,并且不能容易地分离。因此,受体激动剂的结合曲线和浓度-反应关系没有直接的解释.这个问题-亲和力-功效问题-尽管在1987年得到了认可,但仍然被忽视和误解。为了避免这种误解的进一步传播,在这篇综述中,我们建议,由英国药理学会和国际基础和临床药理学联合会(IUPHAR)提出的药理学本科生的核心课程中应包括亲和力-功效问题.
    A fundamental mistake in receptor theory has led to an enduring misunderstanding of how to estimate the affinity and efficacy of an agonist. These properties are inextricably linked and cannot be easily separated in any case where the binding of a ligand induces a conformation change in its receptor. Consequently, binding curves and concentration-response relationships for receptor agonists have no straightforward interpretation. This problem-the affinity-efficacy problem-remains overlooked and misunderstood despite it being recognized in 1987. To avoid the further propagation of this misunderstanding, we propose in this review that the affinity-efficacy problem should be included in the core curricula for pharmacology undergraduates proposed by the British Pharmacological Society and the International Union of Basic and Clinical Pharmacology (IUPHAR).
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  • 文章类型: Journal Article
    了解激动剂浓度-反应曲线(CRC)是药理学的基石。虽然CRC参数,激动剂效力(EC50)和功效(最大反应,Imax)得到了充分的研究,无配体门控的作用(最小响应,Imin)在CRC上经常被忽视。这项研究探讨了无配体门控对肌肉型乙酰胆碱(ACh)受体激动剂反应的影响,重点研究Imin在调节EC50和Imax中的作用。三个增加的功能增益(GOF)突变,使用自动膜片钳电生理学研究了两个降低无配体门控平衡常数(L0)的功能丧失(LOF)突变。GOF突变增强激动剂效力,而LOF突变减少了它。计算的CRC与经验结果吻合良好,表明激动剂CRC可以从L0的知识来估计。计算了由于LOF突变导致的激动剂功效降低,随后使用单通道膜片钳电生理学进行了验证,在标准化CRC中经常被掩盖的因素。该研究还评估了突变(L0)对CRC的综合影响,确认预测模型。Further,在远处的残基之间没有发现明显的能量耦合(>15埃达),表明突变效应是局部的,不会改变总体激动剂亲和力。这些发现证实了无配体门控在调节激动剂应答中的作用,并建立了用于从L0的已知变化估计CRC参数的预测模型。该研究强调了内在活性在受体理论中的重要性。
    Understanding the agonist concentration-response curve (CRC) is the cornerstone in pharmacology. While CRC parameters, agonist potency (EC50) and efficacy (maximum response, Imax) are well-studied, the role of unliganded gating (minimum response, Imin) on CRC is often overlooked. This study explores the effect of unliganded gating on agonist response in muscle-type acetylcholine (ACh) receptors, focusing on the underexplored role of Imin in modulating EC50 and Imax. Three Gain-of-Function (GOF) mutations that increase, and two Loss-of-Function (LOF) mutations that decrease the unliganded gating equilibrium constant (L0) were studied using automated patch-clamp electrophysiology. GOF mutations enhanced agonist potency, whereas LOF mutations reduced it. The calculated CRC aligned well with empirical results, indicating that agonist CRC can be estimated from knowledge of L0. Reduction in agonist efficacy due to LOF mutations was calculated and subsequently validated using single-channel patch-clamp electrophysiology, a factor often obscured in normalized CRC. The study also evaluated the combined impact of mutations (L0) on CRC, confirming the predictive model. Further, no significant energetic coupling between distant residues (>15 Å) was found, indicating that the mutations\' effects are localized and do not alter overall agonist affinity. These findings substantiate the role of unliganded gating in modulating agonist responses and establishes a predictive model for estimating CRC parameters from known changes in L0. The study highlights the importance of intrinsic activity in receptor theory.
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