Adjoint method

  • 文章类型: Journal Article
    在微波成像中,伴随方法被广泛用于更新方向的有效计算,,然后用于更新未知模型参数。然而,根据成像场景和应用的优化算法,伴随方法的利用率和公式显着不同。由于伴随公式的特定问题性质,伴随计算之间的差异可能会被忽视。这里,我们将伴随方法公式分为两组:直接法和间接法。直接法涉及计算成本函数的导数,然而,在间接方法中,计算预测数据的导数。在这次审查中,提出了直接伴随方法和间接伴随方法,比较,并讨论。公式是使用频域和时域中的二维波动方程明确得出的。进行了有限差分时域仿真,以显示单源多接收机的伴随方法的不同用途,和多个收发器场景。这项研究表明,适当的伴随方法选择对于提高应用优化算法的计算效率具有重要意义。
    In microwave imaging, the adjoint method is widely used for the efficient calculation of the update direction, which is then used to update the unknown model parameter. However, the utilization and the formulation of the adjoint method differ significantly depending on the imaging scenario and the applied optimization algorithm. Because of the problem-specific nature of the adjoint formulations, the dissimilarities between the adjoint calculations may be overlooked. Here, we have classified the adjoint method formulations into two groups: the direct and indirect methods. The direct method involves calculating the derivative of the cost function, whereas, in the indirect method, the derivative of the predicted data is calculated. In this review, the direct and indirect adjoint methods are presented, compared, and discussed. The formulations are explicitly derived using the two-dimensional wave equation in frequency and time domains. Finite-difference time-domain simulations are conducted to show the different uses of the adjoint methods for both single source-multiple receiver, and multiple transceiver scenarios. This study demonstrated that an appropriate adjoint method selection is significant to achieve improved computational efficiency for the applied optimization algorithm.
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  • 文章类型: Journal Article
    虽然自2013年实施《大气污染防治行动计划》以来,长江三角洲5种基本环境空气污染物浓度有所降低,但臭氧浓度仍在增加。为了探讨YRD臭氧污染的原因,我们使用GEOS-Chem及其伴随模型研究了典型循环模式下重臭氧污染事件中臭氧对不同源区和排放部门的前体排放的敏感性。该模型采用清华大学中国多分辨率排放清单(MEIC)和0.25°×0.3125°嵌套网格。通过使用T模式主成分分析(T-PCA),2013年至2019年位于YRD中心区域的南京市重度臭氧污染日(观测到的MDA8O3浓度≥160μgm-3)的循环模式分为四种类型,具有西伯利亚低地的主要特征,巴尔哈什湖高,东北低,黄海高,和表面的东南风。伴随结果表明,江苏和浙江的排放对南京市重度臭氧污染的贡献最大。江苏省人为NOx和NMVOCs排放量减少10%,浙江和上海可以将南京的臭氧浓度分别降低3.40μgm-3和0.96μgm-3。然而,南京当地NMVOCs排放的减少对臭氧浓度影响不大,减少局部NOx排放甚至会增加臭氧污染。对于不同的排放部门,工业排放占南京市臭氧污染的31%-74%,其次是交通排放(18%-49%)。该研究可为预测臭氧污染事件和制定准确的减排策略提供科学依据。
    Although the concentrations of five basic ambient air pollutants in the Yangtze River Delta (YRD) have been reduced since the implementation of the \"Air Pollution Prevention and Control Action Plan\" in 2013, the ozone concentrations still increase. In order to explore the causes of ozone pollution in YRD, we use the GEOS-Chem and its adjoint model to study the sensitivities of ozone to its precursor emissions from different source regions and emission sectors during heavy ozone pollution events under typical circulation patterns. The Multi-resolution Emission Inventory for China (MEIC) of Tsinghua University and 0.25° × 0.3125° nested grids are adopted in the model. By using the T-mode principal component analysis (T-PCA), the circulation patterns of heavy ozone pollution days (observed MDA8 O3 concentrations ≥160 μg m-3) in Nanjing located in the center area of YRD from 2013 to 2019 are divided into four types, with the main features of Siberian Low, Lake Balkhash High, Northeast China Low, Yellow Sea High, and southeast wind at the surface. The adjoint results show that the contributions of emissions emitted from Jiangsu and Zhejiang are the largest to heavy ozone pollution in Nanjing. The 10 % reduction of anthropogenic NOx and NMVOCs emissions in Jiangsu, Zhejiang and Shanghai could reduce the ozone concentrations in Nanjing by up to 3.40 μg m-3 and 0.96 μg m-3, respectively. However, the reduction of local NMVOCs emissions has little effect on ozone concentrations in Nanjing, and the reduction of local NOx emissions would even increase ozone pollution. For different emissions sectors, industry emissions account for 31 %-74 % of ozone pollution in Nanjing, followed by transportation emissions (18 %-49 %). This study could provide the scientific basis for forecasting ozone pollution events and formulating accurate strategies of emission reduction.
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  • 文章类型: Journal Article
    直接评估三维(3D)细胞单应力纤维(SF)的结构和功能在技术上仍然具有挑战性。由于SF特征尺寸远低于光学显微镜的分辨率。因此,需要计算方法来估计SFs在各种状态下的有效结构和收缩行为。在这里,我们开发了嵌入3D水凝胶中的收缩AVIC的3D计算模型,以估计其SF方向和收缩力。我们首先利用我们的水凝胶逆模型[1]来估计局部水凝胶的机械性能。接下来,我们开发了两个基于有限元的逆模型,利用单方向和分散方向的SF结构。两种模型都估计,最大的SF力发生在中航工业的突起处。第二个模型估计,最大程度的SF对齐发生在中航工业的突起处,而中航工业的中部显示出较少对齐的纤维。据我们所知,我们报告了第一个完全3D计算的收缩细胞模型,该模型可以预测局部变化的应力纤维方向和收缩力水平。展望未来,这些模型可以帮助我们在亚细胞长度尺度上加深对SF功能的理解,并且可以纳入组织/器官功能的多尺度模型.
    Within the aortic valve (AV) leaflet exists a population of interstitial cells (AVICs) that maintain the constituent tissues by extracellular matrix (ECM) secretion, degradation, and remodeling. AVICs can transition from a quiescent, fibroblast-like phenotype to an activated, myofibroblast phenotype in response to growth or disease. AVIC dysfunction has been implicated in AV disease processes, yet our understanding of AVIC function remains quite limited. A major characteristic of the AVIC phenotype is its contractile state, driven by contractile forces generated by the underlying stress fibers (SF). However, direct assessment of the AVIC SF contractile state and structure within physiologically mimicking three-dimensional environments remains technically challenging, as the size of single SFs are below the resolution of light microscopy. Therefore, in the present study, we developed a three-dimensional (3D) computational approach of AVICs embedded in 3D hydrogels to estimate their SF local orientations and contractile forces. One challenge with this approach is that AVICs will remodel the hydrogel, so that the gel moduli will vary spatially. We thus utilized our previous approach (Khang et al. 2023, \"Estimation of Aortic Valve Interstitial Cell-Induced 3D Remodeling of Poly (Ethylene Glycol) Hydrogel Environments Using an Inverse Finite Element Approach,\" Acta Biomater., 160, pp. 123-133) to define local hydrogel mechanical properties. The AVIC SF model incorporated known cytosol and nucleus mechanical behaviors, with the cell membrane assumed to be perfectly bonded to the surrounding hydrogel. The AVIC SFs were first modeled as locally unidirectional hyperelastic fibers with a contractile force component. An adjoint-based inverse modeling approach was developed to estimate local SF orientation and contractile force. Substantial heterogeneity in SF force and orientations were observed, with the greatest levels of SF alignment and contractile forces occurring in AVIC protrusions. The addition of a dispersed SF orientation to the modeling approach did not substantially alter these findings. To the best of our knowledge, we report the first fully 3D computational contractile cell models which can predict locally varying stress fiber orientation and contractile force levels.
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  • 文章类型: Journal Article
    提出了一种基于伴随的方法来计算凝血级联数学模型结果的梯度。该方法首先通过考虑一个简单的、分析处理的案例仅涉及3个物种。通过考虑涉及34种化学物种通过45种化学反应相互作用的外在途径的详细模型,以及内源性凝血酶电位的梯度,进一步说明了其潜力。凝血时间,计算凝血酶相对于初始浓度和反应速率的最大速率和峰值。表明,该方法产生的梯度估计与文献中迄今为止使用的有限差分近似完全一致,但是计算成本要低得多。
    An adjoint-based methodology is proposed to compute the gradient of the outcomes of mathematical models for the coagulation cascade. The method is first exposed and validated by considering a simple, analytically tractable case involving only 3 species. Its potential is further illustrated by considering a detailed model for the extrinsic pathway involving 34 chemical species interacting through 45 chemical reactions and for which the gradient of Endogeneous Thrombin Potential, clotting time, maximum rate and peak value of thrombin with respect to the initial concentrations and reactions rates are computed. It is shown that the method produces gradients estimates that are fully consistent with the finite differences approximation used so far in the literature, but at a much lower computational cost.
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  • 文章类型: Journal Article
    主动脉瓣间质细胞(AVIC)位于主动脉瓣的小叶组织内,并维持和重塑其细胞外基质成分。该过程的一部分是由潜在的应激纤维带来的AVIC收缩性的结果,其行为可以在各种疾病状态下改变。目前,直接研究致密小叶组织内的AVIC收缩行为具有挑战性。因此,光学透明的聚(乙二醇)水凝胶基质已用于通过3D牵引力显微镜(3DTFM)研究AVIC收缩性。然而,水凝胶的局部刚度难以直接测量,并且进一步被AVIC的重塑活性所混淆。水凝胶力学中的歧义可导致计算的细胞牵引中的大误差。在这里,我们开发了一种逆计算方法来估计AVIC诱导的水凝胶材料的重塑。通过测试问题验证了该模型,该问题包括实验测量的AVIC几何形状和包含未修改的规定模量场,加劲,和退化的地区。逆模型以高精度估计了地面实况数据集。当应用于通过3DTFM评估的AVIC时,该模型估计了中航工业附近显著变硬和退化的区域。我们观察到,硬化主要位于中航工业的突起处,可能是由免疫染色证实的胶原沉积的结果。退化在空间上更加均匀,并且存在于远离中航工业的区域,可能是酶活性的结果。展望未来,这种方法将允许更准确地计算中航工业收缩力水平。重要声明:主动脉瓣(AV),位于左心室和主动脉之间,防止逆流进入左心室.在AV组织内存在主动脉瓣间质细胞(AVIC)的常驻群体。并具有补充功能,恢复,重塑细胞外基质成分。目前,直接研究致密小叶组织内的AVIC收缩行为在技术上具有挑战性。因此,光学透明的水凝胶已用于通过3D牵引力显微镜研究AVIC收缩性。在这里,我们开发了一种评估AVIC诱导的水凝胶重塑的方法。该方法能够准确估计中航工业引起的显著硬化和退化区域,可以更深入地了解AVIC对疾病状况的反应。
    Aortic valve interstitial cells (AVICs) reside within the leaflet tissues of the aortic valve and maintain and remodel its extracellular matrix components. Part of this process is a result of AVIC contractility brought about by underlying stress fibers whose behaviors can change in various disease states. Currently, it is challenging to directly investigate AVIC contractile behaviors within dense leaflet tissues. As a result, optically clear poly (ethylene glycol) hydrogel matrices have been used to study AVIC contractility via 3D traction force microscopy (3DTFM). However, the local stiffness of the hydrogel is difficult to measure directly and is further confounded by the remodeling activity of the AVIC. Ambiguity in hydrogel mechanics can lead to large errors in computed cellular tractions. Herein, we developed an inverse computational approach to estimate AVIC-induced remodeling of the hydrogel material. The model was validated with test problems comprised of an experimentally measured AVIC geometry and prescribed modulus fields containing unmodified, stiffened, and degraded regions. The inverse model estimated the ground truth data sets with high accuracy. When applied to AVICs assessed via 3DTFM, the model estimated regions of significant stiffening and degradation in the vicinity of the AVIC. We observed that stiffening was largely localized at AVIC protrusions, likely a result of collagen deposition as confirmed by immunostaining. Degradation was more spatially uniform and present in regions further away from the AVIC, likely a result of enzymatic activity. Looking forward, this approach will allow for more accurate computation of AVIC contractile force levels. STATEMENT OF SIGNIFICANCE: The aortic valve (AV), positioned between the left ventricle and the aorta, prevents retrograde flow into the left ventricle. Within the AV tissues reside a resident population of aortic valve interstitial cells (AVICs) that replenish, restore, and remodel extracellular matrix components. Currently, it is technically challenging to directly investigate AVIC contractile behaviors within the dense leaflet tissues. As a result, optically clear hydrogels have been used to study AVIC contractility through means of 3D traction force microscopy. Herein, we developed a method to estimate AVIC-induced remodeling of PEG hydrogels. This method was able to accurately estimate regions of significant stiffening and degradation induced by the AVIC and allows a deeper understanding of AVIC remodeling activity, which can differ in normal and disease conditions.
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  • 文章类型: Journal Article
    Fast and accurate identification of the pollutant source location and release rate is important for improving indoor air quality. From the perspective of public health, identification of the airborne pathogen source in public buildings is particularly important for ensuring people\'s safety and health. The existing adjoint probability method has difficulty in distinguishing the temporal source, and the optimization algorithm can only analyze a few potential sources in space. This study proposed an algorithm combining the adjoint-pulse and regularization methods to identify the spatiotemporal information of the point pollutant source in an entire room space. We first obtained a series of source-receptor response matrices using the adjoint-pulse method in the room based on the validated CFD model, and then used the regularization method and composite Bayesian inference to identify the release rate and location of the dynamic pollutant source. The results showed that the MAPEs (mean absolute percentage errors) of estimated source intensities were almost less than 15%, and the source localization success rates were above 25/30 in this study. This method has the potential to be used to identify the airborne pathogen source in public buildings combined with sensors for disease-specific biomarkers.
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  • 文章类型: Journal Article
    具有高集成度的单片集成模式转换器对于光子集成电路(PIC)至关重要,广泛应用于下一代光通信和复杂的量子系统。预计PIC将变得更加小型化,多功能,随着微纳米技术的发展和智能化。设计空间的增加使得基于传统参数扫描或启发式设计的高性能器件设计难以实现,特别是在可重构PIC器件的优化设计中。结合模式耦合理论和伴随计算方法,提出了一种可切换模式变换器的设计方法。基于相变材料(PCM),该器件可以实现TE0模式的传输以及从TE0到TE1模式的转换,占用面积为0.9×7.5μm2。我们还发现,在1.55μm的工作波长下,两种状态下的模式纯度都可以达到78.2%。所设计的方法将为可编程光子集成器件提供新的动力,并在通信领域找到广阔的应用前景,光学神经网络,和感应。
    Monolithic integrated mode converters with high integration are essential to photonic integrated circuits (PICs), and they are widely used in next-generation optical communications and complex quantum systems. It is expected that PICs will become more miniaturized, multifunctional, and intelligent with the development of micro/nano-technology. The increase in design space makes it difficult to realize high-performance device design based on traditional parameter sweeping or heuristic design, especially in the optimal design of reconfigurable PIC devices. Combining the mode coupling theory and adjoint calculation method, we proposed a design method for a switchable mode converter. The device could realize the transmission of TE0 mode and the conversion from TE0 to TE1 mode with a footprint of 0.9 × 7.5 μm2 based on the phase change materials (PCMs). We also found that the mode purity could reach 78.2% in both states at the working wavelength of 1.55 μm. The designed method will provide a new impetus for programmable photonic integrated devices and find broad application prospects in communication, optical neural networks, and sensing.
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  • 文章类型: Journal Article
    一个外骨骼,可穿戴设备,是基于用户的身体和认知交互而设计的。外骨骼的控制使用反映用户意图的生物医学信号作为输入。并将其算法计算为输出以使运动平滑。然而,转换生物医学信号输入的过程,如肌电图(EMG),到输出调整的扭矩和角度的外骨骼是有限的时滞和精度的轨迹预测,这导致受试者和外骨骼之间的不匹配。这里,我们通过将可微分连续系统与动态肌肉骨骼模型合并,提出了基于EMG的单关节外骨骼系统。计算每个肌肉收缩的参数并将其应用于刚性外骨骼系统以预测精确轨迹。结果揭示了膝盖外骨骼的准确扭矩和角度预测以及运动期间的良好辅助性能。我们的方法在收敛速度和执行时间方面优于其他模型。总之,与动态肌肉骨骼模型合并的可微分连续系统支持由EMG信号控制的外骨骼的有效和准确的性能。
    An exoskeleton, a wearable device, was designed based on the user\'s physical and cognitive interactions. The control of the exoskeleton uses biomedical signals reflecting the user intention as input, and its algorithm is calculated as an output to make the movement smooth. However, the process of transforming the input of biomedical signals, such as electromyography (EMG), into the output of adjusting the torque and angle of the exoskeleton is limited by a finite time lag and precision of trajectory prediction, which result in a mismatch between the subject and exoskeleton. Here, we propose an EMG-based single-joint exoskeleton system by merging a differentiable continuous system with a dynamic musculoskeletal model. The parameters of each muscle contraction were calculated and applied to the rigid exoskeleton system to predict the precise trajectory. The results revealed accurate torque and angle prediction for the knee exoskeleton and good performance of assistance during movement. Our method outperformed other models regarding the rate of convergence and execution time. In conclusion, a differentiable continuous system merged with a dynamic musculoskeletal model supported the effective and accurate performance of an exoskeleton controlled by EMG signals.
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  • 文章类型: Journal Article
    地面臭氧对人类健康和生态系统产生不利影响。控制程序的有效性取决于控制的前体,多少,以及减排发生的地点和时间。我们使用社区多尺度空气质量模型的伴随研究了加利福尼亚州圣华金河谷(SJV)对本地和上风向源前体排放的奇数氧(Ox=O3NO2)敏感性。敏感度按小时和天绘制和分类。一起来看,旧金山湾区和萨克拉门托谷地前体排放的影响与当地SJV排放的影响程度相似。当天的排放敏感性主要归因于当地来源,最具影响力的人为排放VOCs(挥发性有机化合物)和NOx(氮氧化物)发生在上午(上午9-11点)和下午早些时候(下午1-3点),分别。对于最北端的SJV受体,萨克拉曼多山谷排放的影响比湾区排放晚5-6小时;对于位于下风更远的SJV受体,这种差异会减小。结果显示下午向更多的NOx敏感条件转变,除了最南端的受体之外,所有的都从VOC-向NOx敏感条件转变。我们还通过前体排放位置和时间的变化来评估控制污染的机会。
    Ground-level ozone adversely affects human health and ecosystems. The effectiveness of control programs depends on which precursor(s) are controlled, by how much, and where and when emission reductions occur. We use the adjoint of the Community Multiscale Air Quality model to investigate odd oxygen (Ox ≡ O3 + NO2) sensitivities in California\'s San Joaquin Valley (SJV) to precursor emissions from local and upwind sources. Sensitivities are mapped and disaggregated by hour and day. Taken together, impacts of precursor emissions in the San Francisco Bay area and Sacramento Valley are similar in magnitude to impacts of local SJV emissions. Same-day emission sensitivities are mostly attributable to local sources, with the most influential anthropogenic emissions of VOCs (volatile organic compounds) and NOx (nitrogen oxides) occurring in the morning (9-11 am) and early afternoon hours (1-3 pm), respectively. For the northernmost SJV receptor, the influence from Sacramento Valley emissions peaks 5-6 h later than Bay area emissions; this difference diminishes for SJV receptors located further downwind. Results show a shift toward more NOx-sensitive conditions in the afternoon with all but the southernmost receptor shifting from VOC- to NOx-sensitive conditions. We also evaluate opportunities to control pollution through shifts in precursor emission location and timing.
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  • 文章类型: Journal Article
    In this work, we study the measurement of blood velocity with contrast enhanced computed tomography. The reconstruction is based on CT projections perpendicular to the main axis of the vessel and on a partial differential equation describing the propagation of the contrast agent. The inverse problem is formulated as an optimal control problem with the transport equation as constraint. The velocity field is obtained with stationary and unstationary Navier-Stokes equations and it is reconstructed with the adjoint method. The velocity and the density of the contrast agent are well reconstructed. The reconstruction results obtained are better for the axial component of the velocity than for transverse components.
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