ATP, adenosine 5′-triphosphate

ATP,5 ′ - 三磷酸腺苷
  • 文章类型: Journal Article
    糖原和淀粉是自然界中主要的碳和能量储备多糖,为生物体提供生存优势。负责这种多糖的生物合成和降解的酶机制的演变,领导了控制装配和拆卸率的机制的发展,根据细胞能量需求储存和回收葡萄糖。四聚体酶ADP-葡萄糖焦磷酸化酶(AGPase)催化并调节两种α-聚葡聚糖生物合成的初始步骤。AGPase通过从细胞能量通量中感知代谢物而表现出协同性和变构调节。对AGPase中变构信号转导机制的理解是一项长期挑战。在这项工作中,我们公开了来自大肠杆菌的范式同四聚体AGPase(EcAGPase)的冷冻EM结构,与正或负生理变构调节剂复合,1,6-二磷酸果糖(FBP)和AMP,两者的分辨率均为3.0。引人注目的是,结构显示FBP与变构裂隙深度结合并与AMP位点重叠。因此,FBP促进调节环的一致构象转换,RL2,从“锁定”状态到“空闲”状态,调节ATP结合和激活酶。我们的生物物理和生物信息学证据强烈支持这一观点,并仔细分析了EcAGPase单点突变体的大量酶动力学数据。冷冻EM结构揭示了酶的变构和催化组分之间的残基相互作用网络(RIN),提供有关如何通过四聚体传输信令信息的唯一详细信息,从中产生合作。总之,通过冷冻EM可视化的构象状态揭示了EcAGPase的调节机制,奠定了基础,从分子水平上了解细菌糖原生物合成的变构控制。
    Glycogen and starch are the major carbon and energy reserve polysaccharides in nature, providing living organisms with a survival advantage. The evolution of the enzymatic machinery responsible for the biosynthesis and degradation of such polysaccharides, led the development of mechanisms to control the assembly and disassembly rate, to store and recover glucose according to cell energy demands. The tetrameric enzyme ADP-glucose pyrophosphorylase (AGPase) catalyzes and regulates the initial step in the biosynthesis of both α-polyglucans. AGPase displays cooperativity and allosteric regulation by sensing metabolites from the cell energy flux. The understanding of the allosteric signal transduction mechanisms in AGPase arises as a long-standing challenge. In this work, we disclose the cryoEM structures of the paradigmatic homotetrameric AGPase from Escherichia coli (EcAGPase), in complex with either positive or negative physiological allosteric regulators, fructose-1,6-bisphosphate (FBP) and AMP respectively, both at 3.0 Å resolution. Strikingly, the structures reveal that FBP binds deeply into the allosteric cleft and overlaps the AMP site. As a consequence, FBP promotes a concerted conformational switch of a regulatory loop, RL2, from a \"locked\" to a \"free\" state, modulating ATP binding and activating the enzyme. This notion is strongly supported by our complementary biophysical and bioinformatics evidence, and a careful analysis of vast enzyme kinetics data on single-point mutants of EcAGPase. The cryoEM structures uncover the residue interaction networks (RIN) between the allosteric and the catalytic components of the enzyme, providing unique details on how the signaling information is transmitted across the tetramer, from which cooperativity emerges. Altogether, the conformational states visualized by cryoEM reveal the regulatory mechanism of EcAGPase, laying the foundations to understand the allosteric control of bacterial glycogen biosynthesis at the molecular level of detail.
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  • 文章类型: Journal Article
    肝细胞癌(HCC)在全球范围内的患病率迅速增加,死亡率很高。肝癌患者的进展是由晚期纤维化引起的,主要是肝硬化,和肝炎。缺乏适当的预防或治愈性治疗方法鼓励针对HCC的广泛研究以开发新的治疗策略。食品和药物管理局批准的Nexavar(索拉非尼)用于治疗不可切除的HCC患者。2017年,Stivarga(regorafenib)和Opdivo(nivolumab)在接受索拉非尼治疗后获得批准用于HCC患者,2018年,Lenvima(lenvatinib)被批准用于不可切除的HCC患者。但是,由于快速的耐药性发展和毒性,这些治疗方案并不完全令人满意.因此,迫切需要针对不同信号机制的新的全身联合疗法,从而降低了癌细胞对治疗产生抗性的前景。在这次审查中,HCC病因和新的治疗策略,包括目前批准的药物和其他潜在的HCC候选药物,如Milciclib,palbociclib,galunisertib,ipafricept,和ramucirumab进行评估。
    Hepatocellular carcinoma (HCC) is swiftly increasing in prevalence globally with a high mortality rate. The progression of HCC in patients is induced with advanced fibrosis, mainly cirrhosis, and hepatitis. The absence of proper preventive or curative treatment methods encouraged extensive research against HCC to develop new therapeutic strategies. The Food and Drug Administration-approved Nexavar (sorafenib) is used in the treatment of patients with unresectable HCC. In 2017, Stivarga (regorafenib) and Opdivo (nivolumab) got approved for patients with HCC after being treated with sorafenib, and in 2018, Lenvima (lenvatinib) got approved for patients with unresectable HCC. But, owing to the rapid drug resistance development and toxicities, these treatment options are not completely satisfactory. Therefore, there is an urgent need for new systemic combination therapies that target different signaling mechanisms, thereby decreasing the prospect of cancer cells developing resistance to treatment. In this review, HCC etiology and new therapeutic strategies that include currently approved drugs and other potential candidates of HCC such as Milciclib, palbociclib, galunisertib, ipafricept, and ramucirumab are evaluated.
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  • 文章类型: Case Reports
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