API

API
  • 文章类型: Journal Article
    我们报道了三种苦参碱衍生物的晶体结构,即,盐(1R,2R,9S,17S)-6-氧代-7,13-二氮杂四环[7.7.1.02,7.013,17]十七烷-13-铵(2E)-3-(3,4-二羟基苯基)丙-2-烯酸(苦参碱咖啡酸盐)倍半水合物,C15H25N2O+·C9H7O4-·1.5H2O(苦参碱-CA),和2-羟基苯甲酸酯(水杨酸酯)一水合物,C15H25N2O+·C7H5O3·H2O(苦参碱-SA),以及1.75水合物形式,(1R,2R,9S,17S)-7,13-重氮环[7.7.1.02,7.013,17]十七烷-6-酮1.75-水合物,C15H24N2O·1.75H2O(苦参碱-H)。每个衍生物表现出一致的分子构象的苦参碱核心,这明显不同于无水形式。值得注意的是,两种盐都在正交空间群P212121中结晶,具有一个阳离子和一个阴离子的不对称单元。在两个盐结构中,观察到苦参碱和酸之间的分子间质子转移,最终形成在叔胺N位点质子化的苦参碱阳离子。苦参碱-CA晶体堆积表现为由一维(1D)超分子螺旋链产生的三维(3D)网络,由N-H稳定..O和O-H..O氢键。在苦参碱-SA的情况下,苦参碱阳离子通过氢键与水杨酸根阴离子和水分子相互连接,也形成一维螺旋基序。水合物的结构形式,苦参碱-H,再次报道了无序的溶剂分子的精确定位。为了进一步阐明结构属性,采用Hirshfeld表面分析和指纹图谱,对这些晶体形式中的分子间接触和相互作用提供了细微差别的观点。
    We report the crystal structures of three matrine derivatives, namely, the salts (1R,2R,9S,17S)-6-oxo-7,13-diazatetracyclo[7.7.1.02,7.013,17]heptadecan-13-ium (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate (matrine caffeinate) sesquihydrate, C15H25N2O+·C9H7O4-·1.5H2O (Matrine-CA), and the 2-hydroxybenzoate (salicylate) monohydrate, C15H25N2O+·C7H5O3-·H2O (Matrine-SA), as well as the 1.75-hydrate form, (1R,2R,9S,17S)-7,13-diazatetracyclo[7.7.1.02,7.013,17]heptadecan-6-one 1.75-hydrate, C15H24N2O·1.75H2O (Matrine-H). Each derivative exhibited a consistent molecular conformation for the matrine core, which is notably distinct from that of the anhydrous form. Notably, both salts crystallized in the orthorhombic space group P212121, with an asymmetric unit featuring one cation and one anion. Within the two salt structures, intermolecular proton transfer between matrine and the acid is observed, culminating in the formation of a matrine cation protonated at the tertiary amine N site. The Matrine-CA crystal packing is manifested as a three-dimensional (3D) network arising from one-dimensional (1D) supramolecular helical chains, stabilized by N-H...O and O-H...O hydrogen bonds. In the case of Matrine-SA, the matrine cation is interconnected via hydrogen bonds with salicylate anions and water molecules, also forming a 1D helical motif. The structure of the hydrate form, Matrine-H, is reported again with the disordered solvent molecules accurately located. To further elucidate the structural attributes, Hirshfeld surface analysis and fingerprint plots are employed, offering a nuanced perspective on the intermolecular contacts and interactions within these crystalline forms.
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  • 文章类型: Journal Article
    平面波校正方法已被证明可有效地对晶体系统中的核磁共振(NMR)参数进行准确建模。最近的工作将平面波校正计算的应用扩展到第二行之外,使用对投影仪增强波(PAW)密度泛函理论(DFT)的简单分子校正来预测35Cl的EFG张量参数。在这里,我们使用基于片段和聚类的计算以及可极化连续体(PCM)方法来扩展这项工作,以进一步提高平面波校正的35ClEFG张量计算的准确性。来自包含含氯分子晶体和结晶氯化物盐的105个单独的35ClEFG张量主成分的测试集的基准数据显示,使用PBE0混合密度泛函的碎片校正平面波计算可将预测的EFG张量成分的精度提高30%相对于传统平面波计算。我们比较了不同几何优化方法和密度泛函对预测35ClEFG张量参数精度的影响。提出了四种频谱分配的情况,以证明提高预测的35ClEFG张量参数的准确性的实用性。
    Planewave-corrected methods have proven effective for accurately modeling nuclear magnetic resonance (NMR) parameters in crystalline systems. Recent work extended the application of planewave-corrected calculations beyond the second row, predicting EFG tensor parameters for 35Cl using a simple molecular correction to projector augmented-wave (PAW) density functional theory (DFT). Here we extend this work using fragment and cluster-based calculations coupled with polarizable continuum (PCM) methods to improve further the accuracy of planewave-corrected 35Cl EFG tensor calculations. Benchmark data from a test set comprised of 105 individual 35Cl EFG tensor principal components for chlorine-containing molecular crystals and crystalline chloride salts shows fragment-corrected planewave calculations using the PBE0 hybrid density functional improve the accuracy of predicted EFG tensor components by 30 % relative to traditional planewave calculations. We compare the influence of different geometry optimization methods and density functionals on the accuracy of predicted 35Cl EFG tensor parameters. Four cases of spectral assignment are presented to demonstrate the utility of improving the accuracy of predicted 35Cl EFG tensor parameters.
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  • 文章类型: Journal Article
    这项研究的重点是利用天然存在的水杨酸和烟酰胺(维生素B3)开发新的可持续活性药物成分(API),具有治疗寻常痤疮的巨大潜力。该研究强调了阳离子的化学结构如何显着影响表面活性,亲脂性,和在水性介质中的溶解度。此外,原料药的新离子形式,其合成是用绿色化学指标进行评估的,对导致痤疮发展的常见病原体表现出非常好的抗菌特性,与单独的水杨酸相比,生物活性的显着增强范围为200至2000倍。分子对接研究还揭示了与常用药物(吲哚美辛,布洛芬,和乙酰水杨酸),在某些情况下甚至具有比普通抗炎药更好的IC50值。导数,在烟酰胺的吡啶环上有一个癸基取代基,表现出对抗痤疮杆菌的功效,同时表现出良好的水溶性和在疏水表面上改善的润湿性,标志着它特别有希望。为了调查原料药对生物圈的影响,EC50参数是针对代表甲壳类动物的模型确定的。大多数化合物(含十二烷基取代基的盐除外)可归类为“相对无害”或“几乎无毒”,表明其潜在的低环境影响,这在现代药物开发的背景下至关重要。
    This study is focused on the utilization of naturally occurring salicylic acid and nicotinamide (vitamin B3) in the development of novel sustainable Active Pharmaceutical Ingredients (APIs) with significant potential for treating acne vulgaris. The study highlights how the chemical structure of the cation significantly influences surface activity, lipophilicity, and solubility in aqueous media. Furthermore, the new ionic forms of APIs, the synthesis of which was assessed with Green Chemistry metrics, exhibited very good antibacterial properties against common pathogens that contribute to the development of acne, resulting in remarkable enhancement of biological activity ranging from 200 to as much as 2000 times when compared to salicylic acid alone. The molecular docking studies also revealed the excellent anti-inflammatory activity of N-alkylnicotinamide salicylates comparable to commonly used drugs (indomethacin, ibuprofen, and acetylsalicylic acid) and were even characterized by better IC50 values than common anti-inflammatory drugs in some cases. The derivative, featuring a decyl substituent in the pyridinium ring of nicotinamide, exhibited efficacy against Cutibacterium acnes while displaying favorable water solubility and improved wettability on hydrophobic surfaces, marking it as particularly promising. To investigate the impact of the APIs on the biosphere, the EC50 parameter was determined against a model representative of crustaceans─Artemia franciscana. The majority of compounds (with the exception of the salt containing the dodecyl substituent) could be classified as \"Relatively Harmless\" or \"Practically Nontoxic\", indicating their potential low environmental impact, which is essential in the context of modern drug development.
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  • 文章类型: Journal Article
    特定的立体异构体是最重要的,因为它对于优化药物功效和安全性至关重要。对活性药物成分或关键中间体的所需立体异构体的分离的追求推动了药物合成和生物催化方法的创新。手性氨基磷酸酯是合成抗病毒药物如瑞司韦和索非布韦的重要组成部分。鉴于药物的(Sp)-非对映异构体的临床效力,需要能够完全水解(Rp)-非对映异构体的酶以通过生物催化反应获得纯化的非对映异构体。在这项研究中,磷酸二酯酶(PTE)的蛋白质工程旨在提高特异性。采用合理的设计和定点突变,我们产生了一个包含24个变异体的小文库用于活性筛选.值得注意的是,W131M和I106A/W131M变体证明了在非常短的水解时间(<20分钟)内成功制备了瑞德西韦和索非布韦前体的纯(Sp)-非对映异构体。我们的工作揭示了一种生产纯立体异构化合物的有前途的方法,利用新型生物催化剂使氨基磷酸酯核苷前药的化学酶合成成为可能。
    Specific stereoisomer is paramount as it is vital for optimizing drug efficacy and safety. The quest for the isolation of desired stereoisomer of active pharmaceutical ingredients or key intermediates drives innovation in drug synthetic and biocatalytic methods. Chiral phosphoramidate is an important building block for the synthesis of antiviral drugs such as remdesivir and sofosbuvir. Given the clinical potency of the (Sp)-diastereomer of the drugs, an enzyme capable of completely hydrolyzing the (Rp)-diastereomer is needed to achieve the purified diastereomers via biocatalytic reaction. In this study, protein engineering of phosphotriesterase (PTE) was aimed to improve the specificity. Employing rational design and site-directed mutagenesis, we generated a small library comprising 24 variants for activity screening. Notably, W131M and I106A/W131M variants demonstrated successful preparation of pure (Sp)-diastereomer of remdesivir and sofosbuvir precursors within a remarkably short hydrolysis time (<20 min). Our work unveils a promising methodology for producing pure stereoisomeric compounds, utilizing novel biocatalysts to enable the chemoenzymatic synthesis of phosphoramidate nucleoside prodrugs.
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  • 文章类型: Journal Article
    本文研究了使用ElsevierScopus和ClarivateWebofScienceJournalCitationReports应用程序编程接口(API)的自定义Python脚本的开发和实现。目的是简化和加快收集研究指标的劳动密集型过程,传统上是由迈阿密大学米勒医学院路易斯·卡尔德纪念图书馆的图书馆员手动编制的。该脚本大大减少了生成有关研究生产率的综合报告所需的时间和精力,从而实现更有效的资源分配和帮助教师评估。
    This article examines the development and implementation of a customized Python script utilizing the Elsevier Scopus and Clarivate Web of Science Journal Citation Reports Application Programming Interfaces (APIs). The aim was to streamline and expedite the labor-intensive process of collecting research metrics, which were traditionally compiled manually by librarians at the University of Miami Miller School of Medicine Louis Calder Memorial Library. The script significantly reduces the time and effort required to generate comprehensive reports on research productivity, thereby enabling more efficient resource allocation and aiding in faculty evaluations.
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  • 文章类型: Journal Article
    大气中有害物质的存在对环境和公共卫生构成重大风险。这些污染物可能来自自然来源,如灰尘和野火,或来自人类活动,如工业,交通运输,和农业实践。这项研究的目的是通过分析环境部的历史数据来评估马来西亚半岛东海岸的空气质量,马来西亚。在过去的11年(2011-2021年)中,从八个监测站收集了PM10,O3,SO2,NO2和CO的每日测量值,并使用环境技术进行了分析。分层凝聚聚类分析(HACA)将两个站点归类为高污染集群(HPC),三个站作为中度污染集群(MPC)的一部分,和三个站作为低污染集群(LPC)。判别分析显示正确的赋值率为90.50%,表明所有五个参数都能够区分具有高度显著性的污染水平(p<0.0001)。进行了主成分分析(PCA),以验证空气质量变量与已识别集群(HPC,MPC,和LPC)。结果表明,在HPC和LPC中提取了两种验证因子(VFs),而在MPC中鉴定出三个VF。PCA对HPC解释的累积方差,MPC,LPC为69.43%,82.32%,和62.16%,分别。最后,人工神经网络(ANN)用于预测空气污染物指数(API)水平,使用R2和RMSE性能指标。PCA-MLP模型A的R2值为0.8470,RMSE为6.6470,而PCA-MLP模型B的R2值为0.8591,RMSE为6.3000,均显示出显著的相关性。
    The presence of harmful substances in the atmosphere poses significant risks to the environment and public health. These pollutants can come from natural sources like dust and wildfires, or from human activities such as industrial, transportation, and agricultural practices. The objective of this study was to assess air quality on the East Coast of Peninsular Malaysia by analyzing historical data from the Department of Environment, Malaysia. Daily measurements of PM10, O3, SO2, NO2, and CO were collected from eight monitoring stations over 11 years (2011-2021) and analyzed using environmetric techniques. Hierarchical agglomerative cluster analysis (HACA) classified two stations as belonging to the high pollution cluster (HPC), three stations as part of the moderate pollution cluster (MPC), and three stations as the low pollution cluster (LPC). Discriminant analysis revealed a correct assignment rate of 90.50%, indicating that all five parameters were able to differentiate pollution levels with high significance (p < 0.0001). Principal component analysis (PCA) was conducted to validate the pattern of air quality variables in relation to the identified clusters (HPC, MPC, and LPC). The results showed that two verifactors (VFs) were extracted in HPC and LPC, while three VFs were identified in MPC. The cumulative variance explained by the PCA for HPC, MPC, and LPC was 69.43%, 82.32%, and 62.16%, respectively. Finally, an artificial neural network (ANN) was used to forecast the air pollutant index (API) levels, using the R2 and RMSE performance metrics. The PCA-MLP Model A yielded an R2 value of 0.8470 and an RMSE of 6.6470, while PCA-MLP Model B achieved an R2 value of 0.8591 and an RMSE of 6.3000, both indicating a significant and strong correlation.
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  • 文章类型: Journal Article
    药品是通过生命周期评估(LCA)评估最具挑战性的产品之一。LCA从业者强调的主要缺点是缺乏库存数据,关于活性药物成分(API)前体的合成(上游)和关于下游阶段(使用和寿命终止)的细节。这里提出了对文献中发现的制药-LCA的简短批判性审查,讨论了用于预测药品生命周期对环境的影响的几种工具和模型,强调当前的优势和劣势,探索改进的可能性。抗生素病例被选为代表性的一类药品,由于它们在世界范围内的大量使用以及日益增长的相关抗菌素耐药性富集问题,这通常不包括在大多数LCA中。此外,我们评论起草相关领域的产品类别规则(PCR),以制定标准方法并增强研究的可比性,最终倡导与公司合作,提高产品整个价值链的库存数据质量和可用性。
    Pharmaceuticals are among the most challenging products to assess by life cycle assessment (LCA). The main drawback highlighted by LCA practitioners is the lack of inventory data, both regarding the synthesis of active pharmaceutical ingredient (API) precursors (upstream) and the details concerning the downstream phases (use and end of life). A short critical review of pharma-LCAs found in the literature is here proposed, with discussion of several tools and models used to predict the environmental impacts derived from the life cycle of pharmaceuticals, emphasizing current strengths and weaknesses, and exploring the possibilities for improvements. The case of antibiotics is selected as a representative class of pharmaceuticals, due to their massive use worldwide and the growing related issue of antimicrobial resistance enrichment, which is generally not included in most of LCAs. Also, we comment on drafting product category rules (PCRs) in the relevant field to develop standard methodologies and enhance the comparability of the studies, ultimately advocating collaboration with companies and improving inventory data quality and availability for the whole value chain of products.
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  • 文章类型: Journal Article
    芹菜素(API)是一种天然的黄酮类化合物,具有抗氧化剂,抗纤维化,抗炎和其他作用,但是关于API对肝纤维化的影响的研究有限。本研究旨在探讨API对CCl4诱导的小鼠肝纤维化的作用及可能机制。结果表明,API降低氧化应激水平,抑制肝星状细胞(HSC)激活,并通过调节PKM2-HIF-1α通路发挥抗肝纤维化作用。我们观察到API减轻CCl4诱导的小鼠肝纤维化模型的肝组织病理损伤和胶原沉积,促进肝纤维化小鼠肝功能的恢复。此外,API通过调节EGFR-MEK1/2-ERK1/2通路抑制丙酮酸激酶同工酶M2(PKM2)从二聚体向四聚体的转变,从而阻止二聚体进入细胞核并阻断PKM2-HIF-1α通路。这种变化导致丙二醛(MDA)和过氧化氢酶(CAT)水平降低,谷胱甘肽(GSH)增加,超氧化物歧化酶(SOD),谷胱甘肽过氧化物酶(GSH-PX)水平,以及肝纤维化小鼠肝脏的总抗氧化能力(T-AOC)。同时,API下调α-平滑肌肌动蛋白(α-SMA)的表达,肝纤维化小鼠肝组织中的波形蛋白和Desmin,抑制HSC的激活,减少胶原沉积.这些结果表明,API可以通过抑制PKM2-HIF-1α通路和减轻氧化应激来抑制HSC活化和减轻CCl4诱导的肝纤维化,为原料药作为治疗肝纤维化的新药的开发和临床应用奠定了重要基础。
    Apigenin (API) is a natural flavonoid compound with antioxidant, anti fibrotic, anti-inflammatory and other effects, but there is limited research on the effect of API on liver fibrosis. This study aims to explore the effect and potential mechanism of API on liver fibrosis induced by CCl4 in mice. The results indicate that API reduces oxidative stress levels, inhibits hepatic stellate cell (HSC) activation, and exerts anti liver fibrosis effects by regulating the PKM2-HIF-1α pathway. We observed that API alleviated liver tissue pathological damage and collagen deposition in CCl4 induced mouse liver fibrosis model, promoting the recovery of liver function in mice with liver fibrosis. In addition, the API inhibits the transition of Pyruvate kinase isozyme type M2 (PKM2) from dimer to tetramer formation by regulating the EGFR-MEK1/2-ERK1/2 pathway, thereby preventing dimer from entering the nucleus and blocking PKM2-HIF-1α access. This change leads to a decrease in malondialdehyde (MDA) and Catalase (CAT) levels and an increase in glutathione (GSH), superoxide dismutase (SOD), glutathione peroxidase (GSH-PX) levels, as well as total antioxidant capacity (T-AOC) in the liver of liver fibrosis mice. At the same time, API downregulated the expression of α-smooth muscle actin (α-SMA), Vimentin and Desmin in the liver tissue of mice with liver fibrosis, inhibited the activation of HSC, and reduced collagen deposition. These results indicate that API can inhibit HSC activation and alleviate CCl4 induced liver fibrosis by inhibiting the PKM2-HIF-1α pathway and reducing oxidative stress, laying an important foundation for the development and clinical application of API as a novel drug for treating liver fibrosis.
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  • 文章类型: Journal Article
    在这个充满挑战的世界里,社交媒体发挥着至关重要的作用,因为它处于数据共享的顶峰。技术的进步使大量的信息可用于数据分析,并且如今已成为热门列表。人们的意见在Twitter等各种社交媒体平台上表达和分享,Facebook,和Instagram。Twitter是一个巨大的平台,包含大量的数据,分析数据是最重要的。对主观数据中显示的个人情绪进行分类的最广泛使用的方法之一是情绪分析。情感分析使用各种机器学习算法,如支持向量机,天真的贝叶斯,长短期记忆,决策树分类器,还有更多,但是本文针对的是使用flask环境进行Twitter情感分析的广义方法。Flask环境提供各种内置功能,将文本的情感分为三个不同的类别:积极,负,中立。此外,它对TwitterDeveloper帐户进行API调用以获取Twitter数据。在获取和分析数据之后,结果显示在包含正百分比的网页上,负,和饼图中短语的中性推文。它显示同一短语的语言分析。此外,该网页引起人们对该短语的推文的关注,并揭示了推文的细节。考虑到三个不同部门的主要行业运营商,即企业,体育服装行业,多媒体产业,我们分析和比较了来自每个行业的两家不同的跨国公司的情绪。
    In this challenging world, social media plays a vital role as it is at the pinnacle of data sharing. The advancement in technology has made a huge amount of information available for data analysis and it is on the hotlist nowadays. Opinions of the people are expressed and shared across various social media platforms like Twitter, Facebook, and Instagram. Twitter is a prodigious platform containing an ample amount of data and analyzing the data is of topmost priority. One of the most widely utilized approaches for classifying an individual\'s emotions displayed in subjective data is sentiment analysis. Sentiment analysis is done using various algorithms of machine learning like Support Vector Machine, Naive Bayes, Long Short-Term Memory, Decision Tree Classifier, and many more, but this paper aims at the generalized way of performing Twitter sentiment analysis using flask environment. Flask environment provides various inbuilt functionalities to analyze the sentiments of text into three different categories: positive, negative, and neutral. Also, it makes API calls to the Twitter Developer account to fetch the Twitter data. After fetching and analyzing the data, the results get displayed on a webpage containing the percentage of positive, negative, and neutral tweets for a phrase in a pie chart. It displays the language analysis for the same phrase. Furthermore, the webpage calls attention to the tweets done on that phrase and reveals the details of the tweets. Considering the major industry runners of three different sectors namely Enterprises, Sports Apparel Industry, and Multimedia Industry, we have analyzed and compared sentiments of two different Multinational companies from each sector.
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  • 文章类型: Journal Article
    BACKGROUND: The purpose of this research is to develop an analytical method and validate it according to ICH guidelines for the estimation of Toremifene by RP-HPLC-PDA with molecular docking and ADMET analysis. From molecular docking, it came to know the receptor affinity specifically to estrogen receptors (ERα and ERβ), which are responsible for cancer therapy. ADMET analyses secure its therapeutic potential as well safety of the drug.
    METHODS: An isocratic method has developed by RP-HPLC-PDA (AGILENT 1100) with symmetry of 100 mm x 4.6 mm x 5 μm particle size C18 column and optimise mobile phase is methanol: 0.1% OPA (orthophosphoric acid) water ratio of 43:57% v/v. Under different conditions like acidic, alkaline, oxidative, and neutral environments, toremifene was tested for degradation.
    RESULTS: The developed method is validated in accordance with ICH guidelines. A calibration curve with an r2 value of 0.9987 has been prepared across the range of 10 to 50 μg/ml with five standard dilutions. The retention time of the drug is 5.575 minutes. The validation results are system suitability (%RSD-0.76), inter-day precision (%RSD 0.14-0.29), intraday precision (%RSD 0.08-0.34), accuracy (%RSD 0.16-0.96), and robustness (%RSD 0.16-0.35). In different intended conditions, four peaks are in 1 N HCl, two peaks in 1 N NaOH, three peaks in 10% H2O2 (1hr), and one peak in neutral.
    CONCLUSIONS: Toremifene, a Selective Estrogen Receptor Modulator (SERM), Drug pharmacokinetic properties and receptor binding affinity results are helpful in designing the analytical method. Developing the RP-HPLC-PDA method is found to be novel, simple and precise. It could be used for testing toremifene in bulk and pharmaceutical tablet dosage forms in quality control, as well as stability tests.
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