ADME study

  • 文章类型: Journal Article
    新药的开发过程因其物理化学不足而受到极大的阻碍,药代动力学,和内在特征。在这方面,选择的氯吲哚酮,(Z)-6-氯-3-(2-氯亚苄基)吲哚啉-2-酮(C1),和硝基吲哚酮,(Z)-6-氯-3-(2-硝基亚苄基)吲哚啉-2-酮(C2),进行了SwissADME和密度泛函理论(DFT)分析。对于化合物C1和C2,BOILED-Egg药代动力学模型预测肠吸收,血脑屏障(BBB)渗透,和P-糖蛋白相互作用。根据理化分析,C1具有适于口服吸收的特殊的药物样特征。尽管只是一些主要CYP450亚型的底物,预计化合物C1和C2具有强的血浆蛋白结合和有效的分布,并阻断这些亚型。使用B3LYP/6-311G的DFT研究(d,P)采用隐含水效应的方法来评估结构特征,电子性质,以及C1和C2的全局反应性参数(GRP)。DFT结果为其他研究提供了进一步的支持,这意味着C2比C1更具水溶性,并且两种化合物都可以与其他分子形成氢键和(弱)分散相互作用,如溶剂和生物分子。此外,GRP研究表明,C1应该比C2更稳定,反应性更低。C1和C2均显示了浓度依赖性的2,2-二苯基-1-吡啶酰肼基(DPPH)和2,2'-氮杂-双(3-乙基苯并噻唑啉-6-磺酸(ABTS)自由基清除活性。简而言之,这一发现为进一步探索这些分子对多种人类疾病的治疗潜力提供了坚实的基础.
    The process of developing of new drugs is greatly hampered by their inadequate physicochemical, pharmacokinetic, and intrinsic characteristics. In this regard, the selected chloro indolinone, (Z)-6-chloro-3-(2-chlorobenzylidene)indolin-2-one (C1), and nitro indolinone, (Z)-6-chloro-3-(2-nitrobenzylidene)indolin-2-one (C2), were subjected to SwissADME and density function theory (DFT) analysis. For compounds C1 and C2, the BOILED-Egg pharmacokinetic model predicted intestinal absorption, blood-brain barrier (BBB) penetration, and p-glycoprotein interaction. According to the physicochemical analysis, C1 has exceptional drug-like characteristics suitable for oral absorption. Despite only being substrates for some of the major CYP 450 isoforms, compounds C1 and C2 were anticipated to have strong plasma protein binding and efficient distribution and block these isoforms. The DFT study using the B3LYP/6-311G(d,p) approach with implicit water effects was performed to assess the structural features, electronic properties, and global reactivity parameters (GRP) of C1 and C2. The DFT results provided further support for other studies, implying that C2 is more water-soluble than C1 and that both compounds can form hydrogen bonds and (weak) dispersion interactions with other molecules, such as solvents and biomolecules. Furthermore, the GRP study suggested that C1 should be more stable and less reactive than C2. A concentration-dependent 2,2-diphenyl-1-picrylhydrazyl (DPPH) and 2,2\'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid (ABTS) radical scavenging activity was shown by both C1 and C2. In brief, this finding has provided a strong foundation to explore further the therapeutic potential of these molecules against a variety of human disorders.
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  • 文章类型: Journal Article
    在印度,乳腺癌是女性最常见的死亡原因,并有可能扩散到其他身体器官。作为转录因子,与雌激素受体(ER)α的相互作用是恶性肿瘤发展的主要原因。芳香化酶抑制剂是ER(+)乳腺癌最常用的治疗方法。多年来已经开发了各种合成化合物来阻断芳香酶受体,然而,它们中的大多数是危险的,并导致多重耐药性。所以,打击这些天然药物可以优先考虑。本研究是在文献综述的基础上进行的,旨在研究Lagenariasiceraria植物成分对乳腺癌靶蛋白(PDBID:3EQM)的抗癌潜力。在这项研究中,选择了34个Lagenariasiceraria配体,人类芳香酶受体的结构是从蛋白质数据库获得的。对于那些天然化学物质,分子对接,药物相似,毒性,和分子动力学用于评估和分析其抗乳腺癌活性。五种物质,2,3-二苯基喹喔啉,17-乙酰氧基孕酮,苄基-d-葡萄糖苷,醋酸麦角烯醇,和Stigmast-7-en-3-ol,显示出比他莫昔芬更高的结合亲和力,它们在乳腺癌治疗中的潜在用途。
    In India, breast cancer is the most common cause of mortality for women and has the potential to spread to other body organs. As a transcription factor, interactions with the estrogen receptor (ER) alpha are primarily responsible for the development of malignant tumors. Aromatase inhibitors are the most often used treatment for ER(+) breast cancer. Various synthetic compounds have been developed over the years to block the aromatase receptor, however, the majority of them are hazardous and cause multidrug resistance. So, combating these natural drugs can be prioritized. The current study was conducted to investigate the anticancer potential of Lagenaria siceraria phytoconstituents against breast cancer target protein (PDB ID: 3EQM) based on a literature review. In this study, 34 Lagenaria siceraria ligands were chosen, and the structure of the human aromatase receptor was acquired from the protein data bank. For those natural chemicals, molecular docking, drug-likeness, toxicity, and molecular dynamics were used to evaluate and analyse their anti-breast cancer activity. Five substances, 2,3-Diphenyl quinoxaline, 17-Acetoxy pregnolone, Benzyl-d-glucoside, Ergostenol acetate, and Stigmast-7-en-3-ol, shown higher binding affinity than Tamoxifen, signaling their potential use in breast cancer treatment.
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  • 文章类型: Journal Article
    化合物1通过1-甲基哌啶-4-酮的微波辅助多组分反应形成,2-氨基-4-甲氧基-6-甲基-1,3,5-三嗪,和氨基硫脲,然后用多种醛合成席夫碱2a-l。对常规方法和微波方法进行了比较,微波方法被证明是相当优于经典的方法,因为它需要更少的时间和产生更高的产量。几个光谱调查,包括1HNMR,13CNMR,弥撒,和红外光谱,用于表征完整的系列。体外抗菌测试表明,化合物2c,2f,和2g是有前途的抗菌剂,虽然化合物2d,2e,和2l是与常规药物利福平相比时有效的抗分枝杆菌剂。对接研究的对接分数是相当大的,这验证了生物检查的结果。在大肠杆菌DNA促旋酶上进行分子对接。根据模拟ADME分析,就药物溶解度而言,每种药物分子都是理想的用途,氢键,和细胞通透性。
    Compound 1 is formed by a microwave-assisted multicomponent reaction of 1-methylpiperidin-4-one, 2-amino-4-methoxy-6-methyl-1,3,5-triazine, and thiosemicarbazide, followed by the synthesis of Schiff base 2a-l with a variety of aldehydes. A comparison was made between the conventional and microwave methods, and the microwave approach was shown to be considerably superior to the classical method since it takes less time and produces higher yields. Several spectral investigations, including 1H NMR, 13C NMR, Mass, and IR spectroscopy, are used to characterize the complete series. In vitro antibacterial testing suggests that compounds 2c, 2f, and 2g are promising antibacterial agents, although compounds 2d, 2e, and 2l are effective antimycobacterial agents when compared to the conventional medicine Rifampicin. The docking score from docking studies is considerable, which validates the results of the biological examination. Molecular docking was performed on Escherichia coli DNA gyrase. According to the in silico ADME analysis, each drug molecule is ideal for use in terms of drug solubility, hydrogen bonding, and cell permeability.
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  • 文章类型: Journal Article
    药物开发是一个复杂而漫长的过程,需要大量的智力和资本投入。以及各种组织和机构之间的广泛合作。合同研究组织在药物开发过程的某些甚至所有阶段都发挥着重要作用。为更好的体外药物吸收服务,处置,代谢和排泄研究,保持数据准确性,提高工作效率,我们开发了一个名为“药物代谢信息系统”的综合信息系统,我们的药物代谢部门经常使用它。药物代谢信息系统协助科学家进行分析设计,数据分析和报告起草,从而减少人为错误。
    Drug development is a complicated and lengthy process requiring a significant amount of intellectual and capital input, as well as extensive collaborations among various organizations and institutions. Contract research organizations play important roles at some or even all stages of the drug development process. To provide better service in in vitro drug absorption, disposition, metabolism and excretion studies, maintain data accuracy and promote work efficiency, we developed an integrated information system termed the \'Drug Metabolism Information System\', and it is being used routinely by our drug metabolism department. The Drug Metabolism Information System assists scientists with assay design, data analysis and report drafting and thus reduces human error.
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  • 文章类型: Journal Article
    背景:耐多药结核病是慢性的,对人类的影响很大。每年都有数百万人受到结核病的影响并丧生。结核分枝杆菌对最常用的抗结核药物有抗药性,因此,需要在短时间内开发新药。在这个方向上,包括苯并咪唑衍生物在内的许多化合物已被确定为有效的抗tb剂。
    方法:对各种苯并咪唑衍生物进行计算机内计算筛选以鉴定有效的抗结核类似物。进行ADME药代动力学评估以鉴定药物样分子。用PDBID:2B37,1QG6,4TZK对选定化合物进行了针对结核分枝杆菌烯酰还原酶(Inha)的分子对接研究,4TZK使用分子对接后处理模块生成共同药效团假设。
    结果:某些化合物的ADME药代动力学结果非常接近类似药物的性质,可以开发为良好的抑制剂。分子对接研究表明,拟议的苯并咪唑和4H-吡喃衍生物比标准和三氯生衍生物具有更好的结合亲和力。药效团假说发展研究的结果也支持并表明了我们关于配体作为结核分枝杆菌抑制剂所需的最小药效团特征的预测。
    结论:香豆素,苯基脲簇状苯并咪唑部分和吡喃并[2,3-c]吡唑衍生物对结核分枝杆菌显示出更高的选择性和效力。通过使用ADME的组合,对接,和药效团研究计算,发现了抑制烯酰-acp还原酶的新的强效命中,并考虑了设计烯酰-acp还原酶抑制剂的要点。
    BACKGROUND: Multi-drug resistance tuberculosis is chronic and highly affected to mankind. Millions of people are affected by tuberculosis and lost their lives every year. Mycobacterium tuberculosis is resistant to the most commonly used anti-TB drugs, hence new drugs need to be developed in a short time. In this direction, many chemical compounds including benzimidazole derivatives have been identified as potent anti-tb agents.
    METHODS: Various benzimidazole derivatives were subjected to in-silico computational screening to identify the potent anti-tubercular analogues. The ADME pharmacokinetics evaluation was performed to identify the drug-like molecules. Molecular docking investigation of selected compounds was performed against Mycobacterium Tuberculosis Enoyl Reductase (Inha) with PDB ID: 2B37, 1QG6, 4TZK, and 4TZK. The common pharmacophore hypothesis was generated using the molecular docking post-processing module.
    RESULTS: The result of ADME pharmacokinetics of some compounds is very close to the drug-like properties and can be developed as good inhibitors. Molecular docking study suggests that the proposed benzimidazole and 4H-pyran derivative have better binding affinity than standard and triclosan derivatives. Results from the pharmacophore hypothesis development study also support and suggest our prediction regarding the minimum pharmacophore features required in ligands to behave as a Mycobacterium Tuberculosis inhibitor.
    CONCLUSIONS: Coumarin, phenylurea clubbed benzimidazole moiety and pyrano[2,3-c]pyrazole derivatives have shown greater selectivity and potency towards Mycobacterium Tuberculosis. By employing a combination of ADME, docking, and pharmacophore study calculations, novel potent hits to inhibit enoyl-acp reductase were identified with the points for consideration for designing of enoyl-acp reductase inhibitor.
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  • 文章类型: Journal Article
    在这里,我们报告设计,取代酰胺和磺酰胺衍生物的24种新型喹啉类似物的合成和体外抗癌活性。针对HCC827,H1975(L858R/T790M)评估了合成化合物的抗癌活性,A549(WTEGFR),A-549和BEAS-2B细胞系。大多数喹啉化合物表现出显著的细胞毒性作用。发现化合物21是最有效的,IC50值为0.010μM,0.21μM,与奥希替尼相比,为0.99μM和2.99μM,IC50值为0.0042μM,0.04μM,0.92μM和2.67μM。化合物21对EGFRL858R/T790M表现出有希望的抑制酶活性,IC50值为138nM,与奥希替尼的110nM相当。在HCC827细胞中对EGFR的磷酸化和信号传导途径进行蛋白质印迹分析,合成化合物18和21的抗癌活性根据其作用机理进行了评估。所有化合物都进行了针对各种EGFR酶类型的比较分子对接研究,包括野生型(PDB:4I23)和T790M突变体(PDB:2JIV)酶。此外,在具有L858R/T790M/C797S突变的EGFR酶的变构结合位点检查化合物(PDBID:5D41).还对EGFR-化合物21复合物进行MD模拟研究,其表明化合物21在酶的ATP和变构位点两者中的稳定性。Further,所有衍生物的模拟ADME预测研究都被发现有希望,表示药物的特性。
    Here in, we report the design, synthesis and in vitro anticancer activity of a novel series of 24 quinoline analogues of substituted amide and sulphonamide derivatives. The anticancer activity of the synthesised compounds was evaluated against the HCC827, H1975 (L858R/T790 M), A549 (WT EGFR), A-549 and BEAS-2B cell lines. The majority of quinoline compounds demonstrated a significant cytotoxic effect. Compound 21 was found to be the most potent, with IC50 values of 0.010 μM, 0.21 μM, 0.99 μM and 2.99 μM as compared to Osimertinib with IC50 values with of 0.0042 μM, 0.04 μM, 0.92 μM and 2.67 μM. Compound 21 exhibited promising inhibitory enzymatic activity against the EGFR L858R/T790 M with IC50 value of 138 nM, comparable to Osimertinib\'s 110 nM. Employing a Western blot assay on the phosphorylation of EGFR and the signalling pathways transmission in HCC827 cells, the anticancer activity of the synthesised compounds 18 and 21 was evaluated in terms of its mechanism of action. All the compounds were subjected to a comparative molecular docking study against various EGFR enzyme types, including the wild-type (PDB: 4I23) and T790 M mutant (PDB: 2JIV) enzymes. Furthermore, compounds were examined at the allosteric binding site of the EGFR enzyme with the L858R/T790 M/C797S mutation (PDB ID: 5D41). The MD simulation study was also performed for EGFR-compound 21 complex which indicates the stability compound 21 in both ATP and allosteric site of enzyme. Further, in silico ADME prediction studies of all derivatives were found promising, signifying the drug like properties.
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  • 文章类型: Journal Article
    STAT3信号传导是细胞增殖的主要内在途径,因为其在损伤组织中频繁激活。各种STAT3调节基因编码细胞因子和生长因子,其受体反过来激活相同的STAT3途径,从而调节细胞增殖。在目前的研究中,我们旨在通过计算机辅助虚拟筛选和分子动力学(MD)模拟分析几种化合物的伤口愈合和组织修复潜力。基于文献研究,总共选择了36种在伤口愈合和组织修复中具有关键功能的药物分子。这些分子的药理学特征(ADME和毒性)被预测为在它们之中找到前导分子。Further,我们进行了一项比较研究,通过分子对接筛选STAT3与许多常规伤口愈合者的结合效率.其中,W6S,Strychnin,泼尼松和N-(6-(4-(3-(4-(4-甲基哌嗪-1-基)甲基)-3-(三氟甲基)苯基)脲基)苯氧基)嘧啶-4-基)环丙烷甲酰胺显示与STAT3蛋白的最佳对接。对于N-(6-(4-(3-(4-(4-甲基哌嗪-1-基)甲基)-3-(三氟甲基)苯基)脲基)苯氧基)嘧啶-4-基)环丙烷甲酰胺,发现这些分子与STAT3的结合能为-8.9Kca/mol,-W6S为8.7Kcal/mol,士的宁为-8.5千卡/摩尔,泼尼松为-8.4千卡/摩尔。对MD模拟的结果进行了重新考虑。模拟结果显示配体与STAT3蛋白稳定结合100ns。与已知的组织修复分子相比,这些化合物显示出与STAT3更好的相互作用潜力。我们的数据为进一步探索这些分子作为在各种类型的伤口和组织损伤中进行测试的新型细胞增殖物铺平了道路。由RamaswamyH.Sarma沟通。
    STAT3 signaling is a major intrinsic pathway for cell proliferation owing to its frequent activation in injured tissues. Various STAT3-regulated genes encode cytokines and growth factors, the receptors of which in turn activate the same STAT3 pathways, thereby regulating cell proliferation. In present study, we aimed to analyze several compounds for their wound healing and tissue repair potential by computer-aided virtual screening and Molecular dynamics (MD) simulation. Based on literature studies, a total of 36 drug molecules were selected having critical functions in wound healing and tissue repair. The pharmacological features (ADME and toxicity) of these molecules were predicted to find lead molecules among them. Further, a comparative study was performed to screen binding efficiency of STAT3 with many conventional wound healers by molecular docking. Among all, W6S, Strychnin, Prednisone and N-(6-(4-(3-(4-((4-Methylpiperazin-1-yl) methyl)-3- (trifluoromethyl)phenyl)ureido)phenoxy)pyrimidin-4-yl)cyclopropanecarboxamide showed best docking with STAT3 protein. The calculated binding energy of these molecules with STAT3 was found to be -8.9 Kca/mol for N-(6-(4-(3-(4-((4-Methylpiperazin-1-yl) methyl)-3-(trifluoromethyl) phenyl)ureido)phenoxy)pyrimidin-4-yl)cyclopropanecarboxamide, -8.7 Kcal/mol for W6S, -8.5 Kcal/mol for Strychnine and -8.4 Kcal/mol for Prednisone . The result was reconsidered for MD simulation. The simulation result showed stable binding of the ligand with STAT3 protein for 100 ns. These compounds showed better interaction potential with STAT3 was compared to known tissue repair molecules. Our data paves way for further exploration of these molecules as novel cell proliferators to be tested in various types of wound and tissue injuries.Communicated by Ramaswamy H. Sarma.
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  • 文章类型: Journal Article
    合成了一系列基于螺环喹喔啉-β-内酰胺的杂环化合物(QL1-QL21),并通过1H-NMR等光谱技术进行了表征,LC-MS,红外光谱和元素分析。化合物与小牛胸腺DNA之间的结合模式和结合强度通过紫外-可见光谱法估计,粘度测量和分子对接研究。化合物通过部分嵌入模式与DNA结合。在吸收滴定实验中,发现所有合成化合物的Kb值在0.24-0.64×105M-1范围内。通过吸收滴定实验评估了所有合成化合物的蛋白质结合研究,所有化合物的Kb值在0.030-1.571×104M-1范围内。针对两种革兰氏(+ve)和三种革兰氏(-ve)细菌筛选化合物的抗微生物活性。所有合成化合物的MIC值均为95-255μM。合成的化合物(QL1-QL21)的LC50值(细胞毒性)在4.00-12.89µg/mL的范围内。使用在线平台SwissADME和admetSAR进行ADME研究,以评估所有合成化合物的药代动力学概况。筛选所有化合物对人骨肉瘤(MG-63)细胞系的抗癌活性。结果表明,所有化合物均表现出有效的抗癌活性。由RamaswamyH.Sarma沟通。
    Series of spiro quinoxaline-β-lactam based heterocyclic compounds (QL 1 - QL 21) were synthesized and characterized by spectroscopic techniques like 1H-NMR, LC-MS, FT-IR spectroscopy and elemental analysis. The binding mode and binding strength between compounds and calf thymus-DNA were estimated by UV-visible spectroscopy, viscosity measurement and molecular docking studies. The compounds bind with the DNA through partial intercalation mode. In the absorption titration experiment, the Kb values for all the synthesized compounds were found in the range of 0.24-0.64 × 105 M-1. The protein binding studies of all the synthesized compounds were evaluated by absorption titration experiment, and the Kb value for all the compounds was obtained in the range of 0.030-1.571 × 104 M-1. The compounds were screened against two Gram (+ve) and three Gram (-ve) bacteria for antimicrobial activity. The MIC values for all the synthesized compounds were found in 95-255 µM. The LC50 values (cytotoxicity) of the synthesized compounds (QL 1-QL 21) were found in the range of 4.00-12.89 µg/mL. The ADME study was carried out using the online platform SwissADME and admetSAR to evaluate the pharmacokinetic profile of all the synthesized compounds. All the compounds were screened for anticancer activity against the human osteosarcoma (MG-63) cell line. The result shows that all the compounds exhibit effective anticancer activity.Communicated by Ramaswamy H. Sarma.
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  • 文章类型: Journal Article
    登革热(DENV),Zica病毒(ZIKV),基孔肯雅热(CHIK)是热带病,在全球范围内造成了很多问题。由埃及伊蚊和白纹伊蚊传播,他们还没有在这个国家完全根除,它们的扩散只在东北地区增加。在病毒的结构中,有可能验证负责其复制的糖蛋白SN1的存在。如果使用特定或复杂的接头抑制这种大分子,它可以中断其复制活动。该问题的替代方案是使用衍生自具有药理学性质的天然产物的结构。动态和分子对接相结合的研究使用计算模拟了Bixin对SN1蛋白的四种异构形式。Z,E-Bixin和E,E-Bixin异构体,亲和能-6.7和-6.5Kcal/mol,呈现最好的结果。因此,Bixin及其异构体,在红木种子中发现,也许是寻找原型化合物的初步建议,以研究将来对抗这种致命病毒。由RamaswamyH.Sarma沟通。
    Dengue (DENV), Zica virus (ZIKV), and Chikungunya fever (CHIK) are tropical diseases that have caused a lot of problems in general worldwide. Transmitted by mosquitoes of the species Aedes aegypti and albopictus, they have not been completely eradicated in the country, and their proliferation has only increased in the Northeast region. Within the structure of the virus, it is possible to verify the presence of glycoprotein SN1, which is responsible for its replication. If this macromolecule is inhibited using a specific or complex linker, it can interrupt its replication activity. An alternative to this problem has been using structures derived from natural products that have pharmacological properties. A dynamic and molecular docking combined study used computational simulation in the four isomeric forms of bixin against the SN1 protein. The Z,E-bixin and E,E-bixin isomers, both with affinity energy -6.7 and -6.5 Kcal/mol, presented the best results. Thus, bixin and its isomers, found in annatto seeds, maybe an initial proposal in the search for prototype compounds to study to fight this lethal virus in the future.Communicated by Ramaswamy H. Sarma.
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  • 文章类型: Journal Article
    新型非喜树碱(非CPT)类构象受限,迄今未知的7,12-二氢二苯并[b,h][1,6]萘啶和7H-Chromeno[3,2-c]喹啉衍生物已设计,合成并评估抗癌活性。针对人癌细胞系(A549和MCF-7)的体外抗增殖评价显示出显著的细胞毒性。在衍生物(8-24)中,8(IC500.44μM和IC500.62μM)和12(IC500.69μM和IC500.54μM)分别被鉴定为针对A-549和MCF-7癌细胞系的最有希望的候选物。8和12的TopoI抑制活性表明,它们可能在未来被开发为潜在的抗癌分子,并通过与有效结合模式的对接分析加以合理化.Further,所有衍生物的模拟ADME预测研究都被发现有希望,表示药物的特性。准确地说,本研究显示了一种合成和强调构象受限的二苯并[b,h][1,6]萘啶衍生物和Chromeno[3,2-c]喹啉衍生物在癌症药物开发和改进的背景下。
    Novel non-camptothecin (non-CPT) class of conformationally constrained, hitherto unknown 7,12-dihydrodibenzo[b,h][1,6] naphthyridine and 7H-Chromeno[3,2-c] quinoline derivatives have been designed, synthesized and evaluated for anti-cancer activity. In vitro anti-proliferation evaluation against human cancer cell lines (A549 and MCF-7) exhibited significant cytotoxicity. Among the derivatives (8-24), 8 (IC50 0.44 μM and IC50 0.62 μM) and 12 (IC50 0.69 μM and IC50 0.54 μM) were identified as the most promising candidate against A-549 and MCF-7 cancer cell lines respectively. Topo I inhibitory activity of 8 and 12 suggested that, they may be developed as potential anti-cancer molecules in future and rationalized by docking analysis with effective binding modes. Further, in silico ADME prediction studies of all derivatives were found promising, signifying the drug like properties. In precise, the present investigation displays a new strategy to synthesize and emphasis on anticancer activities of conformationally constrained dibenzo[b,h][1,6] naphthyridine derivatives and Chromeno[3,2-c] quinoline derivatives in the context of cancer drug development and refinement.
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