ABC transporter genes

ABC 转运蛋白基因
  • 文章类型: Journal Article
    水中耐消毒剂病原体的出现是对公众健康的主要威胁。然而,人类消耗的药物是否会引起细菌对消毒剂的耐药性尚不清楚。在这里,大肠杆菌暴露于12种抗抑郁药,并测试了抗抑郁剂诱导的氯霉素(CHL)抗性突变体对消毒剂的敏感性。全基因组测序,全局转录组测序,和实时定量聚合酶链反应用于阐明潜在的机制。我们观察到度洛西汀,氟西汀,阿米替林,和舍曲林使大肠杆菌对CHL的突变频率显著增加了15至2948倍。所得突变体增加了次氯酸钠的平均MIC50,苯扎溴铵,和三氯生大约2到8倍。始终如一,marRAB和acrAB-tolC基因,与ABC转运蛋白基因一起(例如,ydda,YadG,yoji,和MDLA),被触发以增加消毒剂从细胞中流出,而ompF被抑制,减少消毒剂渗入细胞。此外,观察到突变体中MarR和acrR的DNA突变的发生,可能导致AcrAB-TolC泵的合成增加。这项研究表明,药物暴露可能会产生耐消毒剂的细菌,然后可以释放到水系统中,提供对水性消毒剂抗性病原体的潜在来源的新见解。
    The emergence of disinfectant-resistant pathogens in water is a major threat to public health. However, whether human-consumed pharmaceuticals can induce bacterial resistance to disinfectants remains unclear. Herein, Escherichia coli was exposed to 12 antidepressants, and susceptibility of antidepressant-induced chloramphenicol (CHL)-resistant mutants to disinfectants was tested. Whole genome sequencing, global transcriptomic sequencing, and real-time quantitative polymerase chain reaction were used to elucidate the underlying mechanisms. We observed that duloxetine, fluoxetine, amitriptyline, and sertraline significantly increased the mutation frequency of E. coli against CHL by 15- to 2948-fold. The resultant mutants increased the average MIC50 of sodium hypochlorite, benzalkonium bromide, and triclosan roughly 2- to 8-fold. Consistently, marRAB and acrAB-tolC genes, together with ABC transporter genes (e.g., yddA, yadG, yojI, and mdlA), were triggered to increase the efflux of disinfectants out of the cell, while ompF was inhibited, reducing disinfectant penetration into the cell. Additionally, the occurrence of DNA mutations in marR and acrR in the mutants was observed, potentially resulting in increased synthesis of the AcrAB-TolC pump. This study indicates that pharmaceutical exposure may create disinfectant-resistant bacteria, which may then be released into water systems, providing novel insights into the potential source of water-borne disinfectant-resistant pathogens.
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  • 文章类型: Journal Article
    小蛾CydiapomonellaL.(鳞翅目:Tortricidae)是全球最臭名昭著的pome果实和核桃害虫之一,对几乎所有种类的杀虫剂都产生了抗药性,包括阿维菌素(ABM)。ATP结合盒(ABC)转运蛋白被认为通过降低生物体组织中杀虫剂的毒性浓度在杀虫剂解毒中起着至关重要的作用。尽管在分子水平上了解解毒机制方面取得了巨大进展,ABC转运蛋白在昆虫中的生理功能研究甚少。在这项研究中,我们发现,ABC抑制剂维拉帕米显著协同ABM的毒性,表明ABC在解毒中的潜在作用。用亚致死剂量(LD10和LD30)的ABM治疗后,在梭菌的三龄幼虫中总共鉴定出54个ABC基因。还使用转录组学分析(RNA-seq)研究了这些基因在不同时间点(24、48、72小时)在ABM处理的幼虫中的表达谱。结果显示,约30个ABC基因的表达在处理后显著上调。在用LD10ABM处理幼虫后48小时,几个特定基因上调。在这些上调的基因中,我们发现,与对照组相比,当幼虫暴露于LD10和LD30剂量的ABM时,CPOM19553的相对表达水平高29.7倍和16.0倍。分别。与其他ABC基因不同,只有CPOM08323在暴露于两种亚致死剂量的ABM的梭菌三龄幼虫的头部和角质层中表现出显着表达水平,在解毒组织如中肠和Malpighian小管中没有观察到表达。这项研究表明,这些上调的基因可能与梭菌的ABM抗性有关。我们的发现将为进一步分析与梭菌中异种生物代谢相关的ABC转运蛋白基因提供额外的信息。
    The codling moth Cydia pomonella L. (Lepidoptera: Tortricidae) is one of the most notorious pests of pome fruits and walnuts worldwide, which has developed resistance to almost all classes of insecticides, including abamectin (ABM). ATP-binding cassette (ABC) transporters are thought to play a vital roles in insecticide detoxification by reducing the toxic concentrations of insecticides in an organism tissues. Despite the tremendous progress in understanding the detoxification mechanisms at the molecular level, the physiological functions of ABC transporters in insects have been poorly investigated. In this study, we found that the ABC inhibitor verapamil synergized significantly the toxicity of ABM, suggesting a potential role of ABC in detoxification. A total of 54 ABC genes were identified in the third-instar larvae of C. pomonella after treatment with sublethal doses (LD10 and LD30) of ABM. The expression profile of these genes in ABM-treated larvae at different time points (24, 48, 72 hr) using transcriptomic analysis (RNA-seq) was also investigated. The results showed that the expression of about 30 ABC genes was significantly co-upregulated after treatment. Several specific genes were up-regulated at 48 hr after treatment of larvae with LD10 ABM. Among these up-regulated genes, we found that the relative expression level of the CPOM19553 was 29.7-fold and 16.0-fold higher when larvae were exposed to ABM at the LD10 and LD30 doses compared to control, respectively. Unlike other ABC genes, only CPOM08323 exhibited significant expression levels in the head and cuticle of the third-instar larvae of C. pomonella exposed to the two sublethal doses of ABM, with no expression was observed in the detoxification tissues such as midgut and Malpighian tubule. This study suggests that these up-regulated genes may be involved in ABM resistance in C. pomonella. Our findings will provide an additional information required for further analysis of ABC transporter genes associated with xenobiotic metabolism in C. pomonella.
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  • 文章类型: Journal Article
    背景:目前,对于慢性胰腺炎(CP),没有任何特定的治疗方法。目的探讨褪黑素给药对内质网应激的影响,氧化应激,纤维化,生化和组织病理学参数,和实验大鼠CP模型中的Abcc2、Abcc5和Abcg2基因水平。
    方法:40只大鼠随机分为5组:假,CP,CP+25mg/kg褪黑素,CP+50mg/kg褪黑素,和CP+安慰剂。在所有的老鼠中,除了假组外,通过腹膜内注射caerulein建立了慢性胰腺炎模型。在治疗组中,褪黑激素被用作治疗剂。血清TGF-β,TNF-α,研究了MDA和GPx水平。对胰腺组织进行组织病理学评价。αSma的表达水平,IR1α,Perk,用qRT-PCR测量Abcc2、Abcc5和Abcg2基因。
    结果:与CP和安慰剂组相比,褪黑激素组的生化结果显示出有利的变化。αSma,IR1α,褪黑素组的Perk表达水平显著较低。CP组Abcc2、Abcc5、Abcg2的表达程度显著高于假手术组,与CP组相比,褪黑素组的这些基因水平显着降低(分别为p<0.01,p<0.05,p<0.05)。
    结论:鉴于这些有利的积极结果,褪黑素可能是CP过程中有用的预防剂。
    BACKGROUND: Currently, there is not any specific treatment for chronic pancreatitis (CP). It was aimed to investigate the effects of melatonin administration on endoplasmic reticulum (ER) stress, oxidative stress, fibrosis, biochemical and histopathological parameters, and Abcc2,Abcc5, and Abcg2 gene levels in an experimental rat CP model.
    METHODS: Forty rats were randomized into five groups: Sham, CP, CP+25 mg/kg melatonin, CP+50 mg/kg melatonin, and CP+placebo. In all rats, except the sham group, a model of chronic pancreatitis was accomplished with intraperitoneal caerulein administration. In treatment groups, melatonin was used as a therapeutic agent. Serum TGF-β, TNF-α, MDA and GPx levels were studied. Pancreatic tissues were evaluated histopathologically. The expression levels of αSma,IR1α,Perk,Abcc2,Abcc5, and Abcg2 genes were measured with the qRT-PCR.
    RESULTS: Biochemical results of the melatonin groups exhibited favorable changes compared to the CP and placebo groups. αSma,IR1α,Perk expression levels were significantly lower in the melatonin groups. The expression levels of Abcc2, Abcc5, and Abcg2 were significantly higher in the CP group compared to the sham group, and these gene levels were significantly lower in the melatonin groups compared to the CP group (p < 0.01, p < 0.05, p < 0.05, respectively).
    CONCLUSIONS: In light of these favorable positive results, melatonin may be a useful preventive agent in the course of CP.
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  • 文章类型: Journal Article
    BACKGROUND: Intrahepatic cholestasis of pregnancy (ICP) can cause premature delivery and stillbirth. Previous studies have reported that mutations in ABC transporter genes strongly influence the transport of bile salts. However, to date, their effects are still largely elusive.
    METHODS: A whole-exome sequencing (WES) approach was used to detect novel variants. Rare novel exonic variants (minor allele frequencies: MAF < 1%) were analyzed. Three web-available tools, namely, SIFT, Mutation Taster and FATHMM, were used to predict protein damage. Protein structure modeling and comparisons between reference and modified protein structures were performed by SWISS-MODEL and Chimera 1.14rc, respectively.
    RESULTS: We detected a total of 2953 mutations in 44 ABC family transporter genes. When the MAF of loci was controlled in all databases at less than 0.01, 320 mutations were reserved for further analysis. Among these mutations, 42 were novel. We classified these loci into four groups (the damaging, probably damaging, possibly damaging, and neutral groups) according to the prediction results, of which 7 novel possible pathogenic mutations were identified that were located in known functional genes, including ABCB4 (Trp708Ter, Gly527Glu and Lys386Glu), ABCB11 (Gln1194Ter, Gln605Pro and Leu589Met) and ABCC2 (Ser1342Tyr), in the damaging group. New mutations in the first two genes were reported in our recent article. In addition, compared to the wild-type protein structure, the ABCC2 Ser1342Tyr-modified protein structure showed a slight change in the chemical bond lengths of ATP ligand-binding amino acid side chains. In placental tissue, the expression level of the ABCC2 gene in patients with ICP was significantly higher (P < 0.05) than that in healthy pregnant women. In particular, the patients with two mutations in ABC family genes had higher average values of total bile acids (TBA), aspartate transaminase (AST), direct bilirubin (DBIL), total cholesterol (CHOL), triglycerides (TG) and high-density lipoprotein (HDL) than the patients who had one mutation, no mutation in ABC genes and local controls.
    CONCLUSIONS: Our present study provide new insight into the genetic architecture of ICP and will benefit the final identification of the underlying mutations.
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  • 文章类型: Journal Article
    背景:尽管靶向组蛋白脱乙酰酶(HDACs)可能是治疗核心结合因子-急性髓系白血病(CBF-AML)的有效策略,据报道,HDAC抑制剂受耐药特性的限制。我们的目的是评估黄芩素对CBF-AML的抗白血病作用并阐明其潜在机制。
    方法:酶活性测定用于测量HDAC的活性抑制。采用Rhodamine123和RT-qPCR评估药物的分布和ATP结合盒(ABC)转运蛋白基因的变化。CCK8,膜联蛋白V/PI,FACS染色证实了黄芩素对细胞生长的影响,凋亡,和差异化。Duolink和IP分析评估HDAC-1和泛素之间的相互作用,HSP90和AML1-ETO,以及Ac-p53和CBFβ-MYH11。使用AML细胞系和携带原代AML细胞的NOD/SCID小鼠模型来评估黄芩素的体内抗白血病效率和潜在机制。
    结果:黄芩素显示HDAC-1/8抑制,触发AML细胞系和原代AML细胞的生长抑制和分化诱导。虽然对HDAC-1的抑制作用是温和的,黄芩素可以通过泛素蛋白酶体途径诱导HDAC-1的降解,从而上调组蛋白H3的乙酰化而不促进ABC转运蛋白基因表达。同时,黄芩素增加了HSP90的乙酰化作用,减少了其与AML1/ETO的连接,因此导致AML1-ETO在t(8;21)q(22;22)AML细胞中降解。在inv(16)AML细胞中,黄芩素具有诱导凋亡的能力,并伴有p53介导的凋亡基因表达。此外,CBFβ-MYH11结合的p53乙酰化通过黄芩素诱导的HDAC-8抑制恢复,这有助于减少CD34+inv(16)AML细胞的存活。
    结论:这些发现提高了对黄芩素表观遗传调控的理解,并保证黄芩素对CBF-AML的治疗潜力。
    BACKGROUND: Although targeting histone deacetylases (HDACs) may be an effective strategy for core binding factor-acute myeloid leukemia (CBF-AML) harboring t(8;21) or inv(16), HDAC inhibitors are reported to be limited by drug-resistant characteristic. Our purpose is to evaluate the anti-leukemia effects of Baicalein on CBF-AML and clarify its underlying mechanism.
    METHODS: Enzyme activity assay was used to measure the activity inhibition of HDACs. Rhodamine123 and RT-qPCR were employed to evaluate the distribution of drugs and the change of ATP-binding cassette (ABC) transporter genes. CCK8, Annexin V/PI, and FACS staining certified the effects of Baicalein on cell growth, apoptosis, and differentiation. Duolink and IP assay assessed the interaction between HDAC-1 and ubiquitin, HSP90 and AML1-ETO, and Ac-p53 and CBFβ-MYH11. AML cell lines and primary AML cells-bearing NOD/SCID mice models were used to evaluate the anti-leukemic efficiency and potential mechanism of Baicalein in vivo.
    RESULTS: Baicalein showed HDAC-1/8 inhibition to trigger growth suppression and differentiation induction of AML cell lines and primary AML cells. Although the inhibitory action on HDAC-1 was mild, Baicalein could induce the degradation of HDAC-1 via ubiquitin proteasome pathway, thereby upregulating the acetylation of Histone H3 without promoting ABC transporter genes expression. Meanwhile, Baicalein increased the acetylation of HSP90 and lessened its connection to AML1/ETO, consequently leading to degradation of AML1-ETO in t(8;21)q(22;22) AML cells. In inv(16) AML cells, Baicalein possessed the capacity of apoptosis induction accompanied with p53-mediated apoptosis genes expression. Moreover, CBFβ-MYH11-bound p53 acetylation was restored via HDAC-8 inhibition induced by Baicalein contributing the diminishing of survival of CD34+  inv(16) AML cells.
    CONCLUSIONS: These findings improved the understanding of the epigenetic regulation of Baicalein, and warrant therapeutic potential of Baicalein for CBF-AML.
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  • 文章类型: Journal Article
    昆虫在其环境中遇到各种金属,其中许多是正常机体稳态在一定浓度下所需的,但基本上所有这些在较高浓度下都是有毒的。昆虫进化了多种基因,和可能的表观遗传,处理金属应力的机制。在所有这些系统中,一个反复出现的主题是复杂性和多样性;即使是简单的,单基因,案件很复杂。在已知的基因家族中,金属硫蛋白可能是最容易理解的,并提供了很好的例子来说明金属反应的多样性。有趣的是,在这些金属响应系统中,分类单元具有相当大的多样性,包括形成小基因家族的重复和单个基因座的复杂表达。引人注目的是,不同的物种进化出不同的机制来应对相同的物种,或类似的,应力表明两个独立的推导,和可塑性,涉及的途径。一些金属反应系统很可能在进化早期就进化了,并且已经被保存了,虽然其他人有分歧,还有一些进化得更近,更融合。除了传统的遗传学,昆虫可能通过各种表观遗传系统对环境金属做出反应,但缺乏直接测试。最终,经典遗传和表观遗传因素可能在调节昆虫金属反应中相互作用。鉴于物种之间的多样性,未来的研究,包括在复杂环境中对非模型物种的基因表达进行广泛的检查,可能会发现更多的基因以及遗传和表观遗传机制.
    Insects encounter a variety of metals in their environment, many of which are required at some concentration for normal organismal homeostasis, but essentially all of which are toxic at higher concentrations. Insects have evolved a variety of genetic, and likely epigenetic, mechanisms to deal with metal stress. A recurring theme in all these systems is complexity and diversity; even simple, single gene, cases are complex. Of the known gene families, the metallothioneins are perhaps the best understood and provide good examples of how diverse metal response is. Interestingly, there is considerable diversity across taxa in these metal-responsive systems, including duplications to form small gene families and complex expression of single loci. Strikingly, different species have evolved different mechanisms to cope with the same, or similar, stress suggesting both independent derivation of, and plasticity in, the pathways involved. It is likely that some metal-response systems evolved early in evolutionary time and have been conserved, while others have diverged, and still others evolved more recently and convergently. In addition to conventional genetics, insects likely respond to environmental metal through a variety of epigenetic systems, but direct tests are lacking. Ultimately, it is likely that classical genetic and epigenetic factors interact in regulating insect metal responses. In light of this diversity across species, future studies including a broad-based examination of gene expression in non-model species in complex environments will likely uncover additional genes and genetic and epigenetic mechanisms.
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