1-Carboxyglutamic Acid

  • 文章类型: Journal Article
    骨中的酸性环境对于骨代谢和脱羧骨钙蛋白的产生至关重要,作为葡萄糖代谢的调节激素。这里,我们描述了酸性条件下脱羧骨钙蛋白的高分辨率X射线晶体结构。pH2.0的脱羧骨钙蛋白在中性pH下保留了具有三个γ-羧基谷氨酸残基的天然骨钙蛋白的α-螺旋结构。这意味着脱羧骨钙蛋白在骨中的酸性环境下是稳定的。此外,定点诱变表明,Glu17和Glu21对于脱羧骨钙蛋白的脂联素诱导活性很重要。这些发现表明,脱羧骨钙蛋白的受体响应骨钙蛋白螺旋1中的负电荷。
    An acidic environment in bone is essential for bone metabolism and the production of decarboxylated osteocalcin, which functions as a regulatory hormone of glucose metabolism. Here, we describe the high-resolution X-ray crystal structure of decarboxylated osteocalcin under acidic conditions. Decarboxylated osteocalcin at pH 2.0 retains the α-helix structure of native osteocalcin with three γ-carboxyglutamic acid residues at neutral pH. This implies that decarboxylated osteocalcin is stable under an acidic environment in bone. In addition, site-directed mutagenesis revealed that Glu17 and Glu21 are important for the adiponectin-inducing activity of decarboxylated osteocalcin. These findings suggest that the receptor of decarboxylated osteocalcin responds to the negative charge in helix 1 of osteocalcin.
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  • 文章类型: Journal Article
    Diabetes mellitus (DM) is a chronic metabolic disease, mainly characterized by increased blood glucose and insulin dysfunction. In response to the persistent systemic hyperglycemic state, numerous metabolic and physiological complications have already been well characterized. However, its relationship to bone fragility, cognitive deficits and increased risk of dementia still needs to be better understood. The impact of chronic hyperglycemia on bone physiology and architecture was assessed in a model of chronic hyperglycemia induced by a single intraperitoneal administration of streptozotocin (STZ; 55 mg/kg) in Wistar rats. In addition, the bone-to-brain communication was investigated by analyzing the gene expression and methylation status of genes that encode the main osteokines released by the bone [Fgf23 (fibroblast growth factor 23), Bglap (bone gamma-carboxyglutamate protein) and Lcn2 (lipocalin 2) and their receptors in both, the bone and the brain [Fgfr1 (fibroblast growth factor receptor 1), Gpr6A (G-protein coupled receptor family C group 6 member A), Gpr158 (G protein-coupled receptor 158) and Slc22a17 (Solute carrier family 22 member 17)]. It was observed that chronic hyperglycemia negatively impacted on bone biology and compromised the balance of the bone-brain endocrine axis. Ultrastructural disorganization was accompanied by global DNA hypomethylation and changes in gene expression of DNA-modifying enzymes that were accompanied by changes in the methylation status of the osteokine promoter region Bglap and Lcn2 (lipocalin 2) in the femur. Additionally, the chronic hyperglycemic state was accompanied by modulation of gene expression of the osteokines Fgf23 (fibroblast growth factor 23), Bglap (bone gamma-carboxyglutamate protein) and Lcn2 (lipocalin 2) in the different brain regions. However, transcriptional regulation mediated by DNA methylation was observed only for the osteokine receptors, Fgfr1(fibroblast growth factor receptor 1) in the striatum and Gpr158 (G protein-coupled receptor 158) in the hippocampus. This is a pioneer study demonstrating that the chronic hyperglycemic state compromises the crosstalk between bone tissue and the brain, mainly affecting the hippocampus, through transcriptional silencing of the Bglap receptor by hypermethylation of Gpr158 gene.
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  • 文章类型: Journal Article
    生物相容性水凝胶是用于骨修复和工程的有前途的方法。基于三嵌段共聚物聚己内酯(PCL)-聚乙二醇-PCL和天然明胶(PCEC/GEL)设计了一种新型的治疗纳米复合水凝胶,并用埃洛石纳米管(HNT)增强。将载有庆大霉素(GM)的HNT固定在聚合物水凝胶基质中以使用冷冻干燥方法制造支架。通过傅里叶变换红外(FT-IR)对支架进行表征,x射线粉末衍射,和扫描电子显微镜(SEM)方法。溶胀率,密度,孔隙度,降解,和力学行为进行了评估,以研究HNT对复合材料理化性能的影响。通过微培养四唑(MTT)测定和SEM研究细胞活力和细胞附着。观察到细胞增殖对人牙髓来源的间充质干细胞(h-DPSC)没有任何细胞毒性作用。进行茜素红染色和实时逆转录聚合酶链反应(QRT-PCR)测定,以监测h-DPSC上支架的骨传导性,将其逐滴接种到支架的顶部。成骨标记基因的信使RNA(mRNA)表达的定量,骨形态发生蛋白2,SPARK,在细胞接种21d的时间内,骨γ-羧基谷氨酸蛋白和runt相关转录因子2,证明了封装细胞的PCEC/GEL/HNT-GM水凝胶支架通过相关基因的上调以及对细胞活力的适度影响来支持h-DPSCs向成骨细胞分化。此外,抗生素负载减少了细菌生长,同时保持了支架的成骨特性。因此,杀菌PCEC/GEL/HNT-GM水凝胶纳米复合材料,具有增强的耐用性,通过直接掺入杀菌药物以防止感染,维持体外接种细胞的功能,这可能是硬组织重建和定制骨植入物制造的显着双功能候选物。
    Biocompatible hydrogels are promising approaches for bone repair and engineering. A novel therapeutic nanocomposite hydrogel was designed based on triblock copolymer poly e-caprolactone (PCL)-polyethylene glycol-PCL and natural gelatin (PCEC/GEL) and reinforced with halloysite nanotube (HNT). Gentamicin (GM) loaded HNT was immobilized in polymeric hydrogel matrix to fabricate scaffolds using the freeze-drying method. Scaffolds were characterized via Fourier transform infrared (FT-IR), x-ray powder diffraction, and scanning electron microscope (SEM) methods. The swelling ratio, density, porosity, degradation, and mechanical behavior were evaluated to investigate the effects of HNT on the physicochemical properties of the composite. Cell viability and cell attachment were investigated by microculture tetrazolium (MTT) assay and SEM. Cell proliferation was observed without any cytotoxicity effect on human dental pulp-derived mesenchymal stem cells (h-DPSCs). Alizarin red staining and real-time reverse transcription polymerase chain reaction (QRT-PCR) assay were carried out to monitor the osteoconductivity of scaffolds on h-DPSCs which were seeded drop wise onto the top of scaffolds. The quantification of the messenger RNA (mRNA) expression of osteogenic marker genes, bone morphogenetic protein 2, SPARK, bone gamma-carboxyglutamate protein and runt-related transcription factor 2 over a period of 21 d of cell seeding, demonstrated that cell-encapsulating PCEC/GEL/HNT-GM hydrogel scaffolds supported osteoblast differentiation of h-DPSCs into osteogenic cells through the up-regulation of related genes along with moderate effects on cell viability. Moreover, the antibiotics loading reduced bacterial growth while maintaining the osteogenic properties of the scaffold. Therefore, the bactericidal PCEC/GEL/HNT-GM hydrogel nanocomposite, with enhanced durability, maintenance the functionality of seeded cellsin vitrothat can be a remarkable dual-functional candidate for hard tissue reconstruction and customized bone implants fabrication via the direct incorporation of bactericidal drug to prevent infection.
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  • 文章类型: Journal Article
    羧基酶参与许多途径,它们的调节在许多途径中起着至关重要的作用。特别是,γ-谷氨酰羧化酶(GGCX)将谷氨酸残基(Glu)转化为维生素K依赖性蛋白(VKDP)的γ-羧基谷氨酸(Gla),从而激活它们。VKDP包括至少17种参与血液凝固等过程的蛋白质,血管钙化,和骨矿化。VKDP被还原形式的维生素K激活,天然存在的维生素K1(苯醌)和K2(甲基萘醌,MKs)。其中,MK7在生物利用度和生物效应方面是最有效的。与其他反式异构体类似,它是通过自然发酵或以反式和顺式化学方式产生的。然而,不同异构体的生物效应的功效和对人类的影响尚不清楚。我们的研究评估了反式和顺式MK7的羧基功效,并将其与其他维生素K异构体进行了比较,通过蛋白质印迹分析评估羧化Gla蛋白残基的表达,并使用无细胞系统通过HPLC测定GGCX活性。TransMK7H2显示出更高的羧酸70KDaGLA蛋白的能力,先前通过华法林治疗在体外抑制。然而,顺式MK7也诱导羧化活性,尽管程度很小。数据经色谱确认,其中证明了顺式MK7H2的轻微羧基活性,与K1H2和氧化反式MK7相当,但低于反式MK7H2。第一次,据报道,甲基萘醌-7的顺式和反式构型的生物活性存在差异。
    Carboxylative enzymes are involved in many pathways and their regulation plays a crucial role in many of these pathways. In particular, γ-glutamylcarboxylase (GGCX) converts glutamate residues (Glu) into γ-carboxyglutamate (Gla) of the vitamin K-dependent proteins (VKDPs) activating them. VKDPs include at least 17 proteins involved in processes such as blood coagulation, blood vessels calcification, and bone mineralization. VKDPs are activated by the reduced form of vitamin K, naturally occurring as vitamin K1 (phylloquinone) and K2 (menaquinones, MKs). Among these, MK7 is the most efficient in terms of bioavailability and biological effect. Similarly to other trans isomers, it is produced by natural fermentation or chemically in both trans and cis. However, the efficacy of the biological effect of the different isomers and the impact on humans are unknown. Our study assessed carboxylative efficacy of trans and cis MK7 and compared it with other vitamin K isomers, evaluating both the expression of residues of carboxylated Gla-protein by western blot analysis and using a cell-free system to determine the GGCX activity by HPLC. Trans MK7H2 showed a higher ability to carboxylate the 70 KDa GLA-protein, previously inhibited in vitro by warfarin treatment. However, cis MK7 also induced a carboxylation activity albeit of a small extent. The data were confirmed chromatographically, in which a slight carboxylative activity of cis MK7H2 was demonstrated, comparable with both K1H2 and oxidized trans MK7 but less than trans MK7H2 . For the first time, a difference of biological activity between cis and trans configuration of menaquinone-7 has been reported.
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  • 文章类型: Journal Article
    牙周炎是由牙菌斑在牙齿表面沉积引起的慢性炎症。人牙周膜干细胞(hPDLSCs)具有成骨分化潜能。长链非编码RNA(lncRNA)共同参与牙周炎。本研究旨在探讨Linc01133在hPDLSCs成骨分化中的作用。从牙周炎患者的牙周膜(PDL)获得的hPDLSCs用于收集Linc01133,microRNA-30c(miR-30c),和骨γ-羧基谷氨酸蛋白(BGLAP)表达数据,并追踪hPDLSCs成骨分化过程中它们的表达变化。定量逆转录聚合酶链反应以及蛋白质印迹用于分析RNA和蛋白质的水平。双荧光素酶报告基因和RNA下拉法证明了Linc01133、miR-30c、和BGLAP。此外,应用碱性磷酸酶(ALP)染色和茜素红染色评价成骨分化程度。Linc01133在牙周炎患者的PDL中下调。上调的Linc01133促进hPDLSCs的成骨分化。Linc01133可以通过增强miR-30c来抑制miR-30c的表达。miR-30c抑制成骨分化。此外,miR-30c靶向BGLAP。BGLAP的敲低消除了miR-30c降低对hPDLSCs成骨分化的影响。Linc01133作为ceRNA通过miR-30c/BGLAP轴调控hPDLSCs的成骨分化。因此,Linc01133可能参与牙周炎的进展。
    Periodontitis is a chronic inflammation caused by the deposition of dental plaque on the tooth surface. Human periodontal ligament stem cells (hPDLSCs) have the potential of osteogenic differentiation. Long non-coding RNAs (lncRNAs) are collectively involved in periodontitis. This study was designed to explore the roles of Linc01133 in osteogenic differentiation of hPDLSCs. hPDLSCs obtained from the periodontal ligament (PDL) of patients with periodontitis were used to collect Linc01133, microRNA-30c (miR-30c), and bone gamma-carboxyglutamate protein (BGLAP) expression data, and their expression changes were traced during osteogenic differentiation of hPDLSCs. Quantitative reverse-transcription polymerase chain reaction as well as western blotting were used to analyze the levels of RNAs and proteins. Dual-luciferase reporter and RNA pull-down assays demonstrated the relationship between Linc01133, miR-30c, and BGLAP. Furthermore, alkaline phosphatase (ALP) staining and alizarin red staining were applied to evaluate the degree of osteogenic differentiation. Linc01133 was downregulated in the PDL of patients with periodontitis. Upregulated Linc01133 promoted osteogenic differentiation of hPDLSCs. Linc01133 could inhibit miR-30c expression by sponging miR-30c. miR-30c suppressed osteogenic differentiation. Additionally, miR-30c targeted BGLAP. Knockdown of BGLAP abrogated the effects of decreased miR-30c on osteogenic differentiation of hPDLSCs. Linc01133 acted as a ceRNA to regulate osteogenic differentiation of hPDLSCs via the miR-30c/BGLAP axis. Therefore, Linc01133 may participate in the progress of periodontitis.
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  • 文章类型: Journal Article
    骨关节炎(OA)是老年人的常见疾病,对生活质量和寿命产生不利影响。其特征在于关节软骨的疼痛性丧失,并且是多基因和多因素的。全基因组关联扫描已经突出显示了90多个骨关节炎遗传信号,其中一些位于或接近高度可信的候选基因。一个实例是与基质Gla蛋白基因MGP内和附近的多态性的关联。我们着手对该基因进行功能研究。
    从软骨中提取核酸,髌下脂肪垫,滑膜,骨小梁,来自OA患者以及接受软骨形成的间充质干细胞(MSC)的梯形和外周血。通过定量PCR(qPCR)检测MGP的表达,RNA测序和等位基因表达失衡(AEI)分析。通过使用RNA干扰(RNAi)敲低MGP表达和通过qPCR评估对一系列基因的影响,在软骨细胞中去除基质Gla蛋白。
    MGP在关节组织中表达,从MSCs培养的血液和软骨细胞。在患病的软骨与非患病的软骨中存在较高的表达。与OA相关的多态性也与MGP的表达相关,赋予OA风险的等位基因在软骨中的表达显着降低,脂肪垫和滑膜,但在血液中的表达增加。基质Gla蛋白的耗尽对大多数测试的基因有显著影响,随着编码降解软骨的酶的分解代谢基因的表达增加。
    MGP表达受到与OA缔合信号相关的顺式作用调节剂的影响。这些在一系列关节组织中具有活性,但在软骨中具有特别强的作用。在血液中观察到相反的效果,突出了该基因表达调控的上下文特异性。软骨软骨细胞遗传缺陷的重述是促分解代谢。
    Osteoarthritis (OA) is a common disease of older individuals that impacts detrimentally on the quality and the length of life. It is characterised by the painful loss of articular cartilage and is polygenic and multifactorial. Genome-wide association scans have highlighted over 90 osteoarthritis genetic signals, some of which reside within or close to highly plausible candidate genes. An example is an association to polymorphisms within and adjacent to the matrix Gla protein gene MGP. We set out to undertake a functional study of this gene.
    Nucleic acid was extracted from cartilage, infrapatellar fat pad, synovium, trabecular bone, trapezium and peripheral whole blood from OA patients and also from mesenchymal stem cells (MSCs) subjected to chondrogenesis. Expression of MGP was measured by quantitative PCR (qPCR), RNA-sequencing and allelic expression imbalance (AEI) analysis. Matrix Gla protein was depleted in chondrocytes by knocking down MGP expression using RNA interference (RNAi) and the effect on a range of genes assessed by qPCR.
    MGP is expressed in joint tissues, blood and chondrocytes cultured from MSCs. There is a higher expression in diseased versus non-diseased cartilage. Polymorphisms that are associated with OA also correlate with the expression of MGP, with the OA risk-conferring allele showing significantly reduced expression in cartilage, fat pad and synovium but increased expression in blood. Depletion of Matrix Gla protein had a significant effect on the majority of genes tested, with an increased expression of catabolic genes that encode enzymes that degrade cartilage.
    MGP expression is subject to cis-acting regulators that correlate with the OA association signal. These are active in a range of joint tissues but have effects which are particularly strong in cartilage. An opposite effect is observed in blood, highlighting the context-specific nature of the regulation of this gene\'s expression. Recapitulation of the genetic deficit in cartilage chondrocytes is pro-catabolic.
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  • 文章类型: Journal Article
    由于γ-羧化或细胞裂解失败而在细胞培养基中缺失γ-羧基谷氨酸(Gla)结构域的分泌型重组活化凝血因子VII活化(rFVIIa)称为无Gla-dominless杂质,与天然rFVIIa相比,其负电荷较少。基于风险评估,这种类型的杂质被认为是rFVIIa的关键药物产品质量属性,其在产品批次中的定量分析是质量控制实验室的关键问题。通过在重组因子VIIa中使用Tris和Bis-Tris丙烷盐缓冲液作为平衡缓冲液并使用高浓度乙酸铵作为洗脱剂,通过强阴离子交换色谱法(SAX)来完成无Gla-domonless杂质的分析。在无Gla域杂质的洗脱时间内出现具有显着强度的鬼峰,会导致相关峰失真,并干扰该杂质的可靠准确定量。随后,通过LC-ESI-MS分析重峰以确定在905.27、623.53和341.60和563.73处显示m/z值的结构。为了找到这些鬼峰的来源,水的质量,缓冲盐和Chelex-100以及流动相A的离子强度(添加25mMNaCl)被认为是影响参数,并且使用DOE软件设计了几个实验,以优化具有最低鬼峰信号的最高质量方法的最佳条件噪声。通过对DOE结果的解释,结论是,高品位的水和缓冲盐以及高质量的Chelex-100树脂是实现鬼峰最低的方法的重要因素。然而,向流动相A中添加25mMNaCl以及低质量缓冲盐或低水等级产生具有可接受的鬼峰的高质量色谱峰。LC/MS分析表明,由于彼此之间或Tris分子之间的氢键而构成的双Tris丙烷的宏观结构可能是鬼峰的来源。
    Secreted recombinant activated clotting factor VII activated (rFVIIa) in cell culture media missing gamma-carboxyglutamic acid (Gla) domain as a result of failure in gamma-carboxylation or cell lysis is called Gla-domainless impurity which has less negative charge compared to native rFVIIa. Based on risk assessment, this type of impurity is considered as critical drug product quality attribute of rFVIIa and its quantitative analysis in product batches is a critical issue in quality control laboratories. Analysis of Gla-domainless impurity is accomplished by Strong Anion Exchange Chromatography (SAX) in recombinant factor VIIa using Tris and Bis-Tris propane salt buffers as equilibrating buffers and high concentration ammonium acetate as an eluent. Appearance of ghost peaks with notable intensity during elution time of Gla-domainless impurity caused distortion of the related peak and interference with robust and accurate quantification of this impurity. Subsequently, the ghost peak was analyzed by LC-ESI-MS to determine the structure which showed the m/z values at 905.27, 623.53 and 341.60 and 563.73. To find the source of these ghost peaks, quality of water, buffer salts and Chelex-100 together with ionic strength of mobile phase A (addition of 25 mM NaCl) were considered as affecting parameters and several experiments designed with DOE software to optimize the best condition of highest quality the method with lowest signal of ghost peak noises. By interpretation of DOE result, it is concluded that high grade water and buffer salt along with high quality Chelex-100 resins are important factors to achieve a method with lowest ghost peaks. However, addition of 25 mM NaCl to mobile phase A with either lower quality buffer salts or lower water grade yields high quality chromatogram peak with acceptable ghost peaks. LC/MS analysis indicates that macrostructures of Bis-Tris propane made up as a result of hydrogen bonds with each other or Tris molecules can be the source of ghost peaks.
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  • 文章类型: Journal Article
    基础和临床研究提示2型糖尿病(T2DM)与认知障碍有关,糖尿病会增加认知障碍和痴呆的风险。最近,一些报告发现羧化不足的骨钙蛋白(ucOC)可能会影响大脑功能,并在T2DM患者中降低。我们旨在探讨血清ucOC与T2DM患者认知功能障碍的相关性。
    总共196名男性T2DM患者,没有已知的影响骨代谢的药物或骨折史,年龄≥18岁,分为认知受损组和正常认知组。我们使用最低精神状态检查(MMSE)的分数来评估受试者的认知功能。还通过可重复的神经心理状态评估电池(RBANS)评估了详细的认知表现。采用酶联免疫吸附试验(ELISA)试剂盒测定血清ucOC。
    与认知正常的男性T2DM患者相比,认知功能受损的男性T2DM患者平均骨钙蛋白浓度显著降低(P<0.05)。认知功能受损患者RBANS总分及各项指标得分均较低(均P<0.05)。经过混杂因素的调整后,除视觉空间/结构外,血清ucOC与RBANS的各种指标均呈正相关。
    男性T2DM患者血清ucOC与RBANS评分呈正相关。提示血清ucOC可能参与了T2DM患者认知功能障碍的发生发展。
    Basic and clinical researches have suggested that type 2 diabetes (T2DM) is associated with cognitive impairment, and diabetes mellitus increases the risk of cognitive impairment and dementia. Recently, some reports found that undercarboxylated osteocalcin (ucOC) could affect brain functions, and decreased in patients with T2DM. We aimed to investigate the association of serum ucOC with cognitive impairment in T2DM patients.
    A total of 196 male T2DM patients without medications known to affect bone metabolism or history of bone fracture, aged ≥18years were recruited and divided into impaired cognition group and normal cognition group. We use the scores of Minimum Mental State Examination (MMSE) to evaluate the subjects\' cognitive function. Detailed cognitive performance was also evaluated by the Repeatable Battery for the Assessment of Neuropsychological Status (RBANS). Serum ucOC was measured by Enzyme-Linked Immunosorbent Assay (ELISA) kit.
    Compared to male T2DM patients with normal cognition, the mean osteocalcin concentrations were significantly lower in male T2DM patients with impaired cognition (P<0.05). RBANS total and all indexes scores were also lower in patients with impaired cognition (all P<0.05). After adjusted effects of confounding factors, serum ucOC was positively correlated with a variety indexes of RBANS except visuospatial/constructional.
    The serum ucOC is positively correlated with RBANS scores in male T2DM patients. It suggests that serum ucOC may be involved in the development and progression of cognitive dysfunction in T2DM patients.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    要点凝血因子的膜结合GLA结构域对于适当的凝块形成是必不可少的。因子X(FX)通过未知的原子级相互作用对磷脂酰丝氨酸(PS)脂质具有特异性。使用分子动力学模拟来开发FX-GLA的第一个膜结合模型。描述了FX-GLA的PS结合模式,并鉴定出潜在的PS特异性结合位点。
    背景因子X(FX)以高度依赖磷脂的方式与细胞膜结合,与组织因子和因子VIIa(FVIIa)复合,启动凝血级联。由于细胞膜的流体性质,有关具有原子分辨率的FX膜结合结构的实验信息仍然难以捉摸。已知FX优先结合磷脂酰丝氨酸(PS)。目的在原子水平上建立FX-GLA结构域与PS的第一个膜结合模型,并鉴定FX-GLA结构域的PS特异性结合位点。方法进行分子动力学(MD)模拟以建立与PS双层结合的FX-GLA结构域的原子级模型。我们利用了具有增强脂质流动性的膜表示,被称为高流动性膜模拟物(HMMM),允许在多个100-ns模拟中通过FX-GLA自发结合和插入膜。在14个独立的模拟中,FX-GLA自发地与膜结合。将所得的膜结合模型从HMMM转化为常规膜并模拟额外的100ns。结果最终的膜结合FX-GLA模型允许详细表征方向,结构域的插入深度和脂质相互作用,深入了解其PS特异性的分子基础。尽管初始方向不同,但所有结合模拟都收敛到相同的配置。结论对FX-GLA中的残基与脂质带电基团之间的相互作用的分析允许鉴定潜在的PS特异性结合位点。这种新的结构和动态信息为全面了解原子级脂质-蛋白质相互作用在调节关键和复杂的凝血级联反应中的作用提供了额外的步骤。
    Essentials Membrane-binding GLA domains of coagulation factors are essential for proper clot formation. Factor X (FX) is specific to phosphatidylserine (PS) lipids through unknown atomic-level interactions. Molecular dynamics simulations were used to develop the first membrane-bound model of FX-GLA. PS binding modes of FX-GLA were described, and potential PS-specific binding sites identified.
    Background Factor X (FX) binds to cell membranes in a highly phospholipid-dependent manner and, in complex with tissue factor and factor VIIa (FVIIa), initiates the clotting cascade. Experimental information concerning the membrane-bound structure of FX with atomic resolution has remained elusive because of the fluid nature of cellular membranes. FX is known to bind preferentially to phosphatidylserine (PS). Objectives To develop the first membrane-bound model of the FX-GLA domain to PS at atomic level, and to identify PS-specific binding sites of the FX-GLA domain. Methods Molecular dynamics (MD) simulations were performed to develop an atomic-level model for the FX-GLA domain bound to PS bilayers. We utilized a membrane representation with enhanced lipid mobility, termed the highly mobile membrane mimetic (HMMM), permitting spontaneous membrane binding and insertion by FX-GLA in multiple 100-ns simulations. In 14 independent simulations, FX-GLA bound spontaneously to the membrane. The resulting membrane-bound models were converted from HMMM to conventional membrane and simulated for an additional 100 ns. Results The final membrane-bound FX-GLA model allowed for detailed characterization of the orientation, insertion depth and lipid interactions of the domain, providing insight into the molecular basis of its PS specificity. All binding simulations converged to the same configuration despite differing initial orientations. Conclusions Analysis of interactions between residues in FX-GLA and lipid-charged groups allowed for potential PS-specific binding sites to be identified. This new structural and dynamic information provides an additional step towards a full understanding of the role of atomic-level lipid-protein interactions in regulating the critical and complex clotting cascade.
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