Subtype

亚型
  • 文章类型: Journal Article
    在强迫症(OCD)患者中观察到的高度异质性强调需要识别神经生理学OCD亚型以促进个性化诊断和治疗。在这项研究中,我们的目的是基于个体化的功能性连接组异常,确定潜在的OCD亚型.我们招募了99名OCD患者和104名健康对照(HCs)的人口学特征相匹配。使用功能连接强度(FCS)的规范模型获得了个性化的功能连接体异常,并将其用作揭示OCD亚型的特征。进行敏感性分析以评估聚类结果的可重复性和稳健性。患者在个体化功能连接体异常中表现出显著的受试者间异质性。确定了相对于HC具有不同FCS异常模式的两种亚型。亚型1患者主要表现为FCS显著降低,包括额回,脑岛,海马体,和中央前/中央后回,而亚型2患者在广泛的脑区显示FCS增加。当所有患者合并时,没有观察到显著差异。此外,鉴定出的亚型在发病年龄上有显著差异.此外,敏感性分析证实了我们亚型分型结果的可重复性.总之,已确定的OCD亚型为OCD的分类学和神经生理异质性提供了新的思路。
    The high heterogeneity observed among patients with obsessive-compulsive disorder (OCD) underscores the need to identify neurophysiological OCD subtypes to facilitate personalized diagnosis and treatment. In this study, our aim was to identify potential OCD subtypes based on individualized functional connectome abnormalities. We recruited a total of 99 patients with OCD and 104 healthy controls (HCs) matched for demographic characteristics. Individualized functional connectome abnormalities were obtained using normative models of functional connectivity strength (FCS) and used as features to unveil OCD subtypes. Sensitivity analyses were conducted to assess the reproducibility and robustness of the clustering outcomes. Patients exhibited significant intersubject heterogeneity in individualized functional connectome abnormalities. Two subtypes with distinct patterns of FCS abnormalities relative to HCs were identified. Subtype 1 patients primarily exhibited significantly decreased FCS in regions including the frontal gyrus, insula, hippocampus, and precentral/postcentral gyrus, whereas subtype 2 patients demonstrated increased FCS in widespread brain regions. When all patients were combined, no significant differences were observed. Additionally, the identified subtypes showed significant differences in age of onset. Furthermore, sensitivity analyses confirmed the reproducibility of our subtyping results. In conclusion, the identified OCD subtypes shed new light on the taxonomy and neurophysiological heterogeneity of OCD.
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  • 文章类型: Journal Article
    循环雄激素在寻常性痤疮和雄激素性脱发的发病机理中起作用;以前已经发现这两者之间的关联。这项研究的目的是调查寻常痤疮病变的严重程度与AGA亚型的关系;并验证寻常痤疮的严重程度与AGA之间的关系。这项研究是在五个不同的皮肤科诊所进行的。男性和女性雄激素性脱发患者合并寻常痤疮。年龄,性别,痤疮病变的严重程度,注意到雄激素性脱发的亚型和雄激素性脱发的严重程度。根据全球痤疮严重程度量表对痤疮病变的严重程度进行分级,并根据汉密尔顿和路德维希量表对雄激素性脱发进行分级。采用SPSSv21进行统计分析。共纳入101例患者(男性12例,女性89例)。患有严重痤疮的患者的平均年龄在统计学上显着降低(p=0.020)。性别差异无统计学意义(p=0.388)。发现寻常痤疮的严重程度与AGA的严重程度和亚型无关;p分别=0.623和0.870。雄激素性脱发的严重程度与痤疮的严重程度之间没有关系;在这项研究中也没有发现痤疮严重程度与雄激素性脱发亚型之间的关系。因此,我们报告说,痤疮的严重程度与共存的雄激素性脱发的亚型和阶段无关.
    The circulating androgens have a role in the pathogenesis of both acne vulgaris and androgenetic alopecia; an association between these two have been found previously. The aim of this study is to investigate the relationship of the severity of acne vulgaris lesions to the subtype of AGA; and to validate the relationship between severities of acne vulgaris and AGA. This study was conducted cross-sectionally at five different dermatology clinics. Male and female androgenetic alopecia patients with comorbid acne vulgaris have been included. The age, gender, severity of acne lesions, subtype of androgenetic alopecia and the severity of androgenetic alopecia were noted. The severity of acne lesions were graded according to the Global Acne Severity Scale and androgenetic alopecia was graded according to the Hamilton and Ludwig Scales. SPSS v 21 was used for the statistical analysis. A total of 101 patients have been included (12 male and 89 female). The mean age of the patients with severe acne was statistically significantly lower (p = 0.020). The difference in terms of gender was statistically insignificant (p = 0.388). The severity of acne vulgaris was found to be independent of the severity and of the subtype of AGA; p = 0.623 and 0.870 respectively. Neither a relationship between the severity of androgenetic alopecia and severity of acne; nor a relationship between acne severity and androgenetic alopecia subtype were found in this study. Thus we report that, acne severity is independent of the subtype and stage of the co-existing androgenetic alopecia.
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  • 文章类型: Journal Article
    暂无摘要。
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  • 文章类型: Journal Article
    目的:使用统计形状模型(SSM)确定前后位(AP)X射线照片上凸轮形态的亚型是否存在,并在10年内评估其与影像学上的髋骨关节炎(RHOA)的相关性。
    方法:全国前瞻性队列髋关节和队列膝关节(CHECK)研究包括1,002名45-65岁的参与者,为期10年的随访。凸轮形态的亚型定义为基于SSM的股骨头-颈交界处的形状变化,与基线凸轮形态(α角≥60°)相关。基线时无骨关节炎的髋关节各亚型(Kellgren&Lawrence(KL)等级<2级)与发生RHOA(KL等级≥2级,或全髋关节置换)之间的关联在10年随访时使用逻辑回归进行估计,并按性别分层。
    结果:在性结合组中,而且男性和女性也是分开的,在模式1,3,4和5中捕获了凸轮形态亚型,比值比(ORs)范围为0.39(0.27~0.58)~2.25(1.64~3.10).对于性别结合组,只有模式3,扁平的头颈连接处,与事件RHOA相关(OR:1.14,1.02-1.27)。男性模式1和3以及女性模式3和4与RHOA相关。值得注意的是,女性模式4,略微扁平的脖子,但弯曲微妙,对RHOA有显著保护作用(OR:0.88,0.80-0.98)。
    结论:我们确定了由α角定义的凸轮形态的四种不同形态亚型。在10年的随访中,仅发现一些亚型是RHOA的危险因素,男性和女性之间的差异。这凸显了仅研究α角以外的凸轮形态的需要。
    OBJECTIVE: To determine if subtypes of cam morphology on anteroposterior radiographs exist using statistical shape modeling (SSM), and to assess their association with incident radiographic hip osteoarthritis (RHOA) within 10 years.
    METHODS: The nationwide prospective Cohort Hip and Cohort Knee (CHECK) study included 1002 participants aged 45-65 years with 10-year follow-up. Subtypes of cam morphology were defined as SSM-based shape variations of femoral head-neck junction that are associated with baseline cam morphology (alpha angle ≥60°). The association between each subtype in hips free of osteoarthritis at baseline (Kellgren & Lawrence (KL) grade <2) and incident RHOA (KL grade≥2, or a total hip replacement) was estimated using logistic regression at 10-year follow-up and stratified by sex.
    RESULTS: In sex-combined group, but also for males and females separately, cam morphology subtypes were captured in modes 1, 3, 4, and 5 with odds ratios (ORs) ranging from 0.39 (0.27-0.58) to 2.25 (1.64-3.10). For sex-combined group, only mode 3, a flattened head-neck junction, was associated with incident RHOA (OR:1.14, 1.02-1.27). Males\' modes 1 and 3 and females\' modes 3 and 4 were associated with RHOA. Notably, the female mode 4, a slightly flattened neck but with subtle curvature, was significantly protective for RHOA (OR:0.88, 0.80-0.98).
    CONCLUSIONS: We identified four distinct morphological subtypes of cam morphology defined by alpha angle. Only some subtypes were found acting as risk factors for RHOA at 10-year follow-up, which differed between males and females. This highlights the need to study cam morphology beyond the alpha angle alone.
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  • 文章类型: Journal Article
    囊胚病是最常见的人畜共患肠道原虫之一,分布全球,可引起以腹泻为主要特征的胃肠道综合征。学童是主要的易感人群。海南省学龄儿童囊胚病无流行病学资料,中国唯一的热带岛屿省份。在2021年3月至2023年6月之间,从海南省三个地区的学童中收集了1973年的粪便样本。通过聚合酶链反应(PCR)扩增小亚基核糖体RNA(SSUrRNA)基因来检查囊胚,并通过DNA测序和系统发育分析鉴定出亚型。囊胚病的总患病率为7.3%(144/1973)。不同地区感染率的差异,国籍,和教育阶段有统计学意义(P<0.001)。确定了五种亚型,其中ST3为优势亚型(60.4%;87/144),其次是ST1(27.8%;40/144),ST7(10.4%;15/144),ST6(0.7%;1/144),和ST2(0.7%;1/144)。通过亚型内遗传多态性分析,鉴定出42个已知序列和15个新序列,包括8个相似度在98.3%至99.78%之间的ST1新变异(ST1-16~ST1-23)和7个相似度在97.7%至99.79%之间的ST7新变异(ST7-7~ST7-13)。结果评估了海南省学龄儿童囊胚病的公共卫生风险,并讨论了感染来源。为海南肠道寄生虫病的有效防控提供重要的基础数据。
    Blastocystis is one of the most common zoonotic intestinal protozoa with global distribution and can cause gastrointestinal syndrome mainly characterized by diarrhea. School children are the main susceptible population. No epidemiological data on Blastocystis among school children in Hainan, the only tropical island province in China. Between March 2021 and June 2023, 1973 fecal samples were collected from school children across three regions in Hainan province. Blastocystis was examined by amplifying the small subunit ribosomal RNA (SSU rRNA) gene via polymerase chain reaction (PCR), and subtypes were identified through DNA sequencing and phylogenetic analysis. The overall prevalence of Blastocystis was 7.3 % (144/1973). The differences in infection rates across different regions, nationalities, and educational stages are statistically significant (P < 0.001). Five subtypes were identified, of which ST3 was the dominant subtype (60.4 %; 87/144), followed by ST1 (27.8 %; 40/144), ST7 (10.4 %; 15/144), ST6 (0.7 %; 1/144), and ST2 (0.7 %; 1/144). 42 known sequences and 15 novel sequences were identified including eight new variations of the ST1 (ST1-16∼ST1-23) with similarities ranging from 98.3 % to 99.78 % and seven new variations of the ST7 (ST7-7∼ST7-13) with similarities ranging from 97.7 % to 99.79 % by intra-subtype genetic polymorphisms analysis. The results evaluate the public health risks of Blastocystis among school children in Hainan and the sources of infection were discussed, providing important basic data for the effective prevention and control of intestinal parasitic diseases in Hainan.
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  • 文章类型: Journal Article
    目标:在广东省,已发现丙型肝炎病毒(HCV)赋予对直接作用的抗病毒药物(DAA)的抗性。在不同的高危人群中,很少有HCV亚型和HCV抗性相关替换(RAS)的研究。在这项研究中,我们的目的是确定高危人群中的亚型分布和RAS,包括吸毒者(DU),男男性行为者(MSM),女性性工作者(FSW),广东省(人口高度发达的省份)和男性性传播疾病(STD)患者。
    方法:使用基于城市的抽样策略,1356个样本来自不同的群体。系统发育分析基于核心确定的亚型,NS5B,或NS5A序列。分析不同风险组及区域的HCV亚型分布及RAS。
    结果:十个亚型,其中6h和6k在广东小说,已确定。所有风险组中的主要亚型为6a。1b和3a中的RAS与其他研究中观察到的不同。粤西地区3b亚型高于其他三个地区。在6a或任何其他基因型6中未发现RAS。
    结论:广东省高危人群中HCV亚型正在扩大。其他风险群体的药物使用和DU的商业性行为可能会将6a从DU传播到其他人群。1b和3a的RAS谱与在中国西南部进行的研究中报道的不同。需要进一步的研究来确定这种差异的原因。此外,在3b亚型中,RAS的组合较高。为指导HCV3b亚型的治疗,在不久的将来,西方城市应考虑HCV基因型3的预处理亚型。
    OBJECTIVE: In Guangdong Province, hepatitis C virus (HCV) had been found to confer resistance to direct-acting antivirals (DAAs). There were few studies of HCV subtypes and resistance-associated substitutions (RASs) of HCV in different high-risk populations. In this study, we aimed to determine the subtype distribution and the RASs in high-risk population groups, including drug users (DU), men who have sex with men (MSM), female sex workers (FSW), and male patients with sexually transmitted diseases (STD) in Guangdong Province (a highly developed province with a large population).
    METHODS: Using a city-based sampling strategy,1356 samples were obtained from different population groups. Phylogenetic analyses determined subtypes based on Core, NS5B, or NS5A sequences. HCV subtype distribution and RASs in various risk groups and regions were analyzed.
    RESULTS: Ten subtypes, of which 6 h and 6 k were novel in Guangdong, were identified. The primary subtype among all risk groups was 6a. RASs in 1b and 3a were different from those observed in other studies. Subtype 3b in western Guangdong was higher than the other three regions. No RASs were found in 6a or any other genotype 6.
    CONCLUSIONS: The HCV subtypes are expanding in high-risk populations in Guangdong. Drug use by other risk groups and commercial sex by DU may bridge the dissemination of 6a from DU to other populations. The RAS profiles of 1b and 3a differed from those reported in studies conducted in southwestern China. Further research is required to determine the reason for this discrepancy. Moreover, the combination of RASs was high in subtype 3b. To guide HCV treatment of subtype 3b, pretreatment subtyping of HCV genotype 3 should be considered in western cities in the near future.
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  • 文章类型: Journal Article
    我们从北海道的乌鸦中分离出高致病性禽流感(HPAI)H5N5和H5N1病毒,Japan,2023-24年冬季。他们与来自北欧的HPAIH5N5病毒具有遗传相似性,但与亚洲不同。各国之间需要持续监测和快速信息共享,以防止HPAI病毒传播。
    We isolated highly pathogenic avian influenza (HPAI) H5N5 and H5N1 viruses from crows in Hokkaido, Japan, during winter 2023-24. They shared genetic similarity with HPAI H5N5 viruses from northern Europe but differed from those in Asia. Continuous monitoring and rapid information sharing between countries are needed to prevent HPAI virus transmission.
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  • 文章类型: Journal Article
    目的:症状是管理和控制急性传染病爆发的重要表型,比如COVID-19。尽管症状群和时间序列模式被认为是患者预后的潜在预测因素,仍需要检测与COVID-19患者预后相关的详细亚型及其基于症状表型的进展模式.这项研究旨在调查患者亚型及其进展模式,并具有不同的预后和预后特征。
    方法:这项研究包括从湖北省四家医院获得的14,139份纵向电子病历(EMR)。中国,涉及2,683名处于COVID-19大流行早期的个体。开发了一种深度表征学习模型来帮助获取患者的症状概况。使用K-means聚类算法将它们划分为不同的亚型。随后,通过考虑入院和出院时与患者相关的亚型来确定症状进展模式.此外,我们使用Fisher检验来确定每种亚型的重要临床实体.
    结果:已经确定了三种表现出特定症状和预后的不同患者亚型。特别是,0亚型占整体的44.2%,以食欲不振为特征,疲劳和睡眠障碍;亚型1包括25.6%的病例,以混乱为特征,咳嗽有痰,包囊和尿失禁;亚型2包括30.2%的病例,以干咳和鼻漏为特征。这三种亚型在预后方面表现出显著差异,死亡率为4.72%,8.59%,分别为0.25%。此外,症状群进展模式显示,亚型0的患者表现为深黄色尿液,胸痛,等。在入院阶段表现出转化为结果较差的更严重亚型的风险升高,而那些出现恶心和呕吐的人倾向于进入温和的亚型。
    结论:这项研究提出了一种有临床意义的方法,利用深度表征学习和包含症状表型的真实世界EMR数据来识别COVID-19亚型及其进展模式。该结果可能有助于改善急性传染病的精确分层和管理。
    OBJECTIVE: Symptoms are significant kind of phenotypes for managing and controlling of the burst of acute infectious diseases, such as COVID-19. Although patterns of symptom clusters and time series have been considered the high potential prediction factors for the prognosis of patients, the elaborated subtypes and their progression patterns based on symptom phenotypes related to the prognosis of COVID-19 patients still need be detected. This study aims to investigate patient subtypes and their progression patterns with distinct features of outcome and prognosis.
    METHODS: This study included a total of 14,139 longitudinal electronic medical records (EMRs) obtained from four hospitals in Hubei Province, China, involving 2,683 individuals in the early stage of COVID-19 pandemic. A deep representation learning model was developed to help acquire the symptom profiles of patients. K-means clustering algorithm is used to divide them into distinct subtypes. Subsequently, symptom progression patterns were identified by considering the subtypes associated with patients upon admission and discharge. Furthermore, we used Fisher\'s test to identify significant clinical entities for each subtype.
    RESULTS: Three distinct patient subtypes exhibiting specific symptoms and prognosis have been identified. Particularly, Subtype 0 includes 44.2% of the whole and is characterized by poor appetite, fatigue and sleep disorders; Subtype 1 includes 25.6% cases and is characterized by confusion, cough with bloody sputum, encopresis and urinary incontinence; Subtype 2 includes 30.2% cases and is characterized by dry cough and rhinorrhea. These three subtypes demonstrate significant disparities in prognosis, with the mortality rates of 4.72%, 8.59%, and 0.25% respectively. Furthermore, symptom cluster progression patterns showed that patients with Subtype 0 who manifest dark yellow urine, chest pain, etc. in the admission stage exhibit an elevated risk of transforming into the more severe subtypes with poor outcome, whereas those presenting with nausea and vomiting tend to incline towards entering the milder subtype.
    CONCLUSIONS: This study has proposed a clinical meaningful approach by utilizing the deep representation learning and real-world EMR data containing symptom phenotypes to identify the COVID-19 subtypes and their progression patterns. The results would be potentially useful to help improve the precise stratification and management of acute infectious diseases.
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  • 文章类型: Journal Article
    本研究的目的是建立基于全幻灯片图像(WSI)的深度学习(DL)模型来预测胃腺癌的病理类型。我们从癌症基因组图谱数据库中下载了356张胃腺癌(STAD)患者的组织病理学图像,并将其随机分为训练集,验证集和测试集(8:1:1)。此外,收集STAD的80个H&E染色的WSI用于外部验证。CLAM工具用于切割WSI,并通过DL算法进一步构建模型,识别和预测组织病理学亚型的准确率超过90%。外部验证结果表明该模型具有一定的泛化能力。此外,从模型中提取DL特征以进一步研究两种亚型之间的免疫浸润和患者预后的差异。DL模型能够准确预测STAD患者的病理分类,为临床诊断提供一定的参考价值。结合DL签名的列线图,基因特征和临床特征可作为临床决策和治疗的预后分类器.
    The aim of this study is to establish a deep learning (DL) model to predict the pathological type of gastric adenocarcinoma cancer based on whole-slide images(WSIs). We downloaded 356 histopathological images of gastric adenocarcinoma (STAD) patients from The Cancer Genome Atlas database and randomly divided them into the training set, validation set and test set (8:1:1). Additionally, 80 H&E-stained WSIs of STAD were collected for external validation. The CLAM tool was used to cut the WSIs and further construct the model by DL algorithm, achieving an accuracy of over 90% in identifying and predicting histopathological subtypes. External validation results demonstrated the model had a certain generalization ability. Moreover, DL features were extracted from the model to further investigate the differences in immune infiltration and patient prognosis between the two subtypes. The DL model can accurately predict the pathological classification of STAD patients, and provide certain reference value for clinical diagnosis. The nomogram combining DL-signature, gene-signature and clinical features can be used as a prognostic classifier for clinical decision-making and treatment.
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  • 文章类型: Journal Article
    使用全面的分子流行病学方法,我们表征了HIV-1在天津市MSM人群中的传播动态,中国。我们的研究结果表明,38.56%(386/1001)的个体聚集在109个分子传输簇(TC)中,50岁及以下的MSM是最常见的HIV-1传播群体。在确定的TC中,CRF01_AE占主导地位,其次是CRF07_BC。值得注意的是,与CRF01_AE相比,CRF07_BC表现出更高的形成大簇的倾向。对两个最大集群的出生-死亡天际线分析表明,艾滋病毒/艾滋病的传播可能处于临界点,到现在为止,几乎所有人都有Re大约1。回顾性分析显示,这些大型集群的快速扩张主要是由于2021年病毒的引入,突出了连续分子监测在识别新出现的高风险传播链和调整措施以应对不断变化的流行病动态方面的至关重要性。此外,我们检测到耐药突变(DRMs)在TC内的传播,特别是在CRF07_BC集群中(K103N,Y181C,和K101E)和CRF01_AE簇(P225H和K219R),强调监测的重要性,以支持一线治疗和暴露前预防(PrEP)的持续疗效。重组分析表明,复杂的重组模式,与氨基酸变异性增加相关,可以赋予病毒适应性特征,在某些宿主群体或地区可能提供竞争优势。我们的研究强调了整合分子流行病学和系统动力学方法以告知有针对性的干预措施的潜力。
    Using a comprehensive molecular epidemiological approach, we characterized the transmission dynamics of HIV-1 among the MSM population in Tianjin, China. Our findings revealed that 38.56% (386/1001) of individuals clustered across 109 molecular transmission clusters (TCs), with MSM aged 50 and below being the group most commonly transmitting HIV-1. Among the identified TCs, CRF01_AE predominated, followed by CRF07_BC. Notably, CRF07_BC demonstrated a higher propensity for forming large clusters compared to CRF01_AE. Birth-death skyline analyses of the two largest clusters indicated that the HIV/AIDS transmission may be at a critical point, nearly all had Re approximately 1 by now. A retrospective analysis revealed that the rapid expansion of these large clusters was primarily driven by the introduction of viruses in 2021, highlighting the crucial importance of continuous molecular surveillance in identifying newly emerging high-risk transmission chains and adapting measures to address evolving epidemic dynamics. Furthermore, we detected the transmission of drug-resistant mutations (DRMs) within the TCs, particularly in the CRF07_BC clusters (K103N, Y181C, and K101E) and CRF01_AE clusters (P225H and K219R), emphasizing the importance of monitoring to support the continued efficacy of first-line therapies and pre-exposure prophylaxis (PrEP). Recombination analyses indicated that complex recombinant patterns, associated with increased amino acid variability, could confer adaptive traits to the viruses, potentially providing a competitive advantage in certain host populations or regions. Our study highlights the potential of integrating molecular epidemiological and phylodynamic approaches to inform targeted interventions.
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