Ranavirus

Ranavirus
  • 文章类型: Journal Article
    新型污染物纳米塑料(NPs)在水生环境中广泛分布,可能对水生生物构成健康威胁。值得注意的是,NPs对水生动物病毒性疾病发生的贡献在很大程度上仍不确定。在这项研究中,研究了聚苯乙烯纳米塑料(PS-NPs)对大口鲈鱼病毒(LMBV)感染的MsF细胞的影响。MsF细胞以时间和剂量依赖性方式摄取PS-NP,并且在500μg/mL的暴露浓度下显著影响细胞活力。Western印迹和qPCR测定表明,暴露于PS-NP加速了MsF细胞中的LMBV复制。PS-NP与LMBV协同作用破坏细胞抗氧化系统,ROS产生增加和抗氧化相关基因mRNA水平降低证明了这一点。此外,PS-NP被发现加剧LMBV诱导的炎症反应,如炎症相关因子表达紊乱所示。此外,我们的结果表明,PS-NP通过抑制cGAS-STING信号通路相关分子的表达来减少IFN的产生,从而促进病毒复制。总的来说,我们的发现表明,NPs对淡水鱼病毒引起的传染病的潜在威胁,并为鱼类疾病的预防和控制提供了新的见解。
    Novel pollutants nanoplastics (NPs) are widely distributed in aquatic environments and may pose a health threat to aquatic organisms. Notably, the contribution of NPs to the occurrence of viral diseases in aquatic animals remains largely uncertain. In this study, the effects of polystyrene nanoplastics (PS-NPs) on Largemouth bass ranavirus (LMBV)-infected MsF cells were investigated. MsF cells took up PS-NPs in a time- and dose-dependent manner and significantly affect cell viability at an exposure concentration of 500 μg/mL. Western blot and qPCR assays indicated that exposure to PS-NPs accelerated LMBV replication in MsF cells. PS-NPs act synergistically with LMBV to disrupt the cellular antioxidant system, as evidenced by increased ROS production and decreased mRNA levels of antioxidant-associated genes. Furthermore, PS-NPs was found to exacerbate LMBV-induced inflammatory responses, as demonstrated by disturbed expression of inflammation-related factors. In addition, our results suggest that PS-NPs reduce IFN production by inhibiting the expression of molecules related to the cGAS-STING signaling pathway, thereby promoting viral replication. Collectively, our findings suggest the potential threat of NPs to infectious diseases caused by freshwater fish viruses and provide new insights for fish disease prevention and control.
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  • 文章类型: Journal Article
    非生物和生物因素的共同影响对于理解通才病原体的传播很重要。温度等非生物因素可以直接影响病原体在环境中的持久性,也会影响生物因素,如东道社区的组成和丰富程度。在中等空间尺度上,温度的影响,社区组成,和宿主的丰度预计将有助于一般病原体的传播。我们使用一个简单的传播模型来解释和预测宿主社区的组成,宿主丰富,和环境病原体的持续时间可以独立和共同影响传播。我们的传播模型阐明了非生物和生物因素如何协同支持病原体的传播。实证数据表明,较高的社区竞争力,丰度高,低温与幼虫两栖动物群落中ranavirus的高传播水平相关。在存在ranavirus的情况下,幼虫两栖动物居住的离散湿地提供了一个令人信服的案例研究,其中包括空间尺度上不同的宿主群落,预计将证明非生物和生物对传播的影响。我们使用这些宿主社区来观察我们的理论模型中所展示的现象。这些发现强调了同时考虑非生物和生物因素的重要性,以及伴随的直接和间接机制,在病原体传播研究中,应扩展到其他具有环境传播能力的普通病原体。
    The joint influence of abiotic and biotic factors is important for understanding the transmission of generalist pathogens. Abiotic factors such as temperature can directly influence pathogen persistence in the environment and will also affect biotic factors, such as host community composition and abundance. At intermediate spatial scales, the effects of temperature, community composition, and host abundance are expected to contribute to generalist pathogen transmission. We use a simple transmission model to explain and predict how host community composition, host abundance, and environmental pathogen persistence times can independently and jointly influence transmission. Our transmission model clarifies how abiotic and biotic factors can synergistically support the transmission of a pathogen. The empirical data show that high community competence, high abundance, and low temperatures correlate with high levels of transmission of ranavirus in larval amphibian communities. Discrete wetlands inhabited by larval amphibians in the presence of ranavirus provide a compelling case study comprising distinct host communities at a spatial scale anticipated to demonstrate abiotic and biotic influence on transmission. We use these host communities to observe phenomena demonstrated in our theoretical model. These findings emphasize the importance of considering both abiotic and biotic factors, and concomitant direct and indirect mechanisms, in the study of pathogen transmission and should extend to other generalist pathogens with the capacity for environmental transmission.
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  • 文章类型: Journal Article
    The von Hippel-Lindau tumor suppressor protein (VHL), an E3 ubiquitin ligase, functions as a critical regulator of the oxygen-sensing pathway for targeting hypoxia-inducible factors. Recent evidence suggests that mammalian VHL may also be critical to the NF-κB signaling pathway, although the specific molecular mechanisms remain unclear. Herein, the roles of mandarin fish ( Siniperca chuatsi) VHL ( scVHL) in the NF-κB signaling pathway and mandarin fish ranavirus (MRV) replication were explored. The transcription of scVHL was induced by immune stimulation and MRV infection, indicating a potential role in innate immunity. Dual-luciferase reporter gene assays and reverse transcription quantitative PCR (RT-qPCR) results demonstrated that scVHL evoked and positively regulated the NF-κB signaling pathway. Treatment with NF-κB signaling pathway inhibitors indicated that the role of scVHL may be mediated through scIKKα, scIKKβ, scIκBα, or scp65. Co-immunoprecipitation (Co-IP) analysis identified scIκBα as a novel target protein of scVHL. Moreover, scVHL targeted scIκBα to catalyze the formation of K63-linked polyubiquitin chains to activate the NF-κB signaling pathway. Following MRV infection, NF-κB signaling remained activated, which, in turn, promoted MRV replication. These findings suggest that scVHL not only positively regulates NF-κB but also significantly enhances MRV replication. This study reveals a novel function of scVHL in NF-κB signaling and viral infection in fish.
    肿瘤抑制蛋白VHL是一种E3泛素连接酶,在缺氧诱导因子的氧敏感通路中起关键调节作用。近期研究表明,哺乳动物VHL在NF-κB信号通路中发挥重要作用,但其具体的分子调控机制尚不清楚。在此,该文开展了鳜鱼VHL( scVHL)在NF-κB信号通路和鳜蛙病毒(MRV)复制中的作用研究。研究结果显示,免疫刺激和MRV感染均可诱导 scVHL的转录,提示 scVHL可能在先天免疫中发挥重要作用。双荧光素酶报告基因实验和实时荧光定量PCR结果显示, scVHL可诱导并激活NF-κB信号通路。利用NF-κB信号通路抑制剂处理结果显示, scVHL在NF-κB信号通路中的调控作用可能靶向 scIKKα、 scIKKβ、 scIκBα或 scp65。通过免疫共沉淀进一步分析,发现 scIκBα是 scVHL的一个新的靶标蛋白,且 scVHL靶向 scIκBα催化K63连接的多聚泛素链的形成,从而激活NF-κB信号通路。在MRV感染后,NF-κB信号通路处于激活状态,NF-κB的激活可促进MRV的复制。上述结果表明, scVHL可正向调控NF-κB,显著促进MRV复制。该研究揭示了 scVHL在NF-κB信号通路和病毒感染中的新作用,有助于深入阐明氧敏感通路调控动物先天性免疫的作用机制提供理论基础。.
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  • 文章类型: Journal Article
    Ranavirus,轮状病毒科内Ranavirus属的成员,已经成为全球两栖动物种群的一个重要问题,以及其他冷血脊椎动物,由于它们作为重大威胁而出现。我们使用生物信息学工具来检查来自Ranavirus的61DNApol基因中的密码子使用模式,淋巴细胞病毒,巨细胞病毒,还有两种未分类的病毒,因为之前没有关于这个主题的研究。结果表明,Ranavirus的DNApol基因中存在轻微或低水平的密码子使用偏差(CUB)。相对同义密码子使用(RSCU)分析表明,在RanavirusDNApol基因中偏爱的主要密码子终止于C或G。检查核苷酸含量的相关分析,第三密码子位置,有效密码子数(ENC)对应分析(COA),香气值,和GRAVY值表明,跨DNApol基因的CUB可能受到突变压力和自然选择的影响。中性图表明自然选择是驱动密码子使用的主要因素。此外,密码子适应指数(CAI)的分析表明RanavirusDNApol基因对其宿主的强大适应性。对相对密码子去优化指数(RCDI)的分析表明,RanavirusDNApol基因受到其宿主更大的选择压力。这些发现将有助于理解影响Ranavirus对其宿主的进化和适应的因素。
    Ranaviruses, members of the genus Ranavirus within the family Iridoviridae, have become a significant concern for amphibian populations globally, along with other cold-blooded vertebrates, due to their emergence as a significant threat. We employed bioinformatics tools to examine the codon usage patterns in 61 DNA pol genes from Ranavirus, Lymphocystivirus, Megalocytivirus, and two unclassified ranaviruses, as no prior studies had been conducted on this topic. The results showed a slight or low level of codon usage bias (CUB) in the DNA pol genes of Ranavirus. Relative synonymous codon usage (RSCU) analysis indicated that the predominant codons favored in Ranavirus DNA pol genes terminate with C or G. Correlation analysis examining nucleotide content, third codon position, effective number of codons (ENC), correspondence analysis (COA), Aroma values, and GRAVY values indicated that the CUB across DNA pol genes could be influenced by both mutation pressure and natural selection. The neutrality plot indicated that natural selection is the primary factor driving codon usage. Furthermore, the analysis of the codon adaptation index (CAI) illustrated the robust adaptability of Ranavirus DNA pol genes to their hosts. Analysis of the relative codon deoptimization index (RCDI) suggested that Ranavirus DNA pol genes underwent greater selection pressure from their hosts. These findings will aid in comprehending the factors influencing the evolution and adaptation of Ranavirus to its hosts.
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  • 文章类型: Journal Article
    种群规模是指导物种保护和管理的重要指标。对于水生物种,环境DNA(eDNA)浓度已被建议用于非侵入性估计种群大小。然而,许多生物和非生物因素同时影响eDNA的产生和降解,这可以改变种群大小与eDNA浓度之间的关系。我们调查了温度的影响,盐度,和ranavirus感染对eDNA浓度的影响。使用线性回归模型,我们在流行之前和期间的三个时间点测试了每种实验处理对eDNA浓度的影响。在感染之前,升高的温度降低了eDNA浓度,表明降解是影响eDNA浓度的驱动力。在早期流行期间,没有治疗强烈影响eDNA浓度和晚期流行病,生产力占主导地位,因为ranavirus强度和死亡生物增加了eDNA浓度。最后,种群大小仅是流行后期eDNA浓度的重要预测指标,我们观察到重复中观的样本之间存在高水平的变异。我们证明了影响生产力和退化力的几个相互作用因素的复杂性,在短时间跨度内对eDNA浓度的影响变化,并检查在半自然条件下从eDNA精确估计种群大小的局限性。
    Population size is an important metric to inform the conservation and management of species. For aquatic species, environmental DNA (eDNA) concentration has been suggested for non-invasively estimating population size. However, many biotic and abiotic factors simultaneously influence the production and degradation of eDNA which can alter the relationship between population size and eDNA concentration. We investigated the influence of temperature, salinity, and ranavirus infection on eDNA concentrations using tadpole mesocosms. Using linear regression models, we tested the influence of each experimental treatment on eDNA concentrations at three time points before and during epidemics. Prior to infection, elevated temperatures lowered eDNA concentrations, indicating that degradation was the driving force influencing eDNA concentrations. During early epidemics, no treatments strongly influenced eDNA concentrations and in late epidemics, productive forces dominated as ranavirus intensity and dead organisms increased eDNA concentrations. Finally, population size was only an important predictor of eDNA concentration in late epidemics and we observed high levels of variation between samples of replicate mesocosms. We demonstrate the complexities of several interacting factors influencing productive and degradative forces, variation in influences on eDNA concentration over short time spans, and examine the limitations of estimating population sizes from eDNA with precision in semi-natural conditions.
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  • 文章类型: Journal Article
    出囊,一种蛋白质复合物,在各种细胞功能中起着至关重要的作用,包括细胞极化,迁移,入侵,胞质分裂,和自噬。Sec3,称为Exoc1,是外囊复合物的关键亚基,可参与细胞存活和凋亡。在这项研究中,两种亚型的Sec3从斜纹石斑鱼中分离,是中国重要的海鱼。在新加坡石斑鱼虹彩病毒(SGIV)感染期间探索了E.coioidesSec3的作用,海鱼的一种重要病原体,可导致90%的死亡率。E.coioidesSec3序列显示出与其他物种的高度相似性,表明存在保守的Sec3超家族域。E.coioidesSec3mRNA可以在所有检查的组织中检测到,尽管表达水平不同。SGIV感染可以上调大肠杆菌Sec3mRNA。上调的Sec3显著促进SGIV诱导的CPE,以及病毒关键基因的表达。大肠杆菌Sec3可以抑制NF-κB和AP-1的激活,以及SGIV诱导的细胞凋亡。结果表明,大肠杆菌Sec3通过调节先天免疫应答促进SGIV感染。
    Exocyst, a protein complex, plays a crucial role in various cellular functions, including cell polarization, migration, invasion, cytokinesis, and autophagy. Sec3, known as Exoc1, is a key subunit of the Exocyst complex and can be involved in cell survival and apoptosis. In this study, two subtypes of Sec3 were isolated from Epinephelus coioides, an important marine fish in China. The role of E. coioides Sec3 was explored during Singapore grouper iridovirus (SGIV) infection, an important pathogen of marine fish which could induce 90 % mortality. E. coioides Sec3 sequences showed a high similarity with that from other species, indicating the presence of a conserved Sec3 superfamily domain. E. coioides Sec3 mRNA could be detected in all examined tissues, albeit at varying expression levels. SGIV infection could upregulate E. coioides Sec3 mRNA. Upregulated Sec3 significantly promoted SGIV-induced CPE, and the expressions of viral key genes. E. coioides Sec3 could inhibit the activation of NF-κB and AP-1, as well as SGIV-induced cell apoptosis. The results illustrated that E. coioides Sec3 promotes SGIV infection by regulating the innate immune response.
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  • 文章类型: Journal Article
    新加坡石斑鱼虹彩病毒(SGIV)属于虹彩病毒科和Ranavirus属,这是一种大型细胞质DNA病毒。用SGIV感染石斑鱼可导致鱼类脾脏出血和肿胀。先前关于基因组注释的工作表明,SGIV包含许多未表征或假设的开放阅读框(ORF),其功能在很大程度上仍然未知。在本研究中,鉴定了SGIVORF128(VP128)编码的蛋白质。VP128主要位于内质网(ER)内。VP128的过表达显著促进SGIV复制。VP128抑制poly(I:C)诱导的干扰素(IFN)-3启动子活性和IFN相关基因的mRNA水平,环带石斑鱼GMP/AMP合酶(EccGAS)/IFN基因刺激因子(EcSTING),和TANK结合激酶1(EcTBK1)。此外,VP128与EcSTING和EcTBK1相互作用。VP128和EcSTING之间的相互作用独立于EcSTING的任何特定结构域。一起,我们的结果表明SGIVVP128通过抑制EcSTING-EcTBK1信号传导对病毒逃避负调节IFN应答.
    Singapore grouper iridovirus (SGIV) belongs to the family Iridoviridae and the genus Ranavirus, which is a large cytoplasmic DNA virus. Infection of grouper with SGIV can cause hemorrhage and swelling of the spleen of the fish. Previous work on genome annotation demonstrated that SGIV contained numerous uncharacterized or hypothetical open reading frames (ORFs), whose functions remained largely unknown. In the present study, the protein encoded by SGIV ORF128 (VP128) was identified. VP128 is predominantly localized within the endoplasmic reticulum (ER). Overexpression of VP128 significantly promoted SGIV replication. VP128 inhibited the interferon (IFN)-3 promoter activity and mRNA level of IFN-related genes induced by poly(I:C), Epinephelus coioides cyclic GMP/AMP synthase (EccGAS)/stimulator of IFN genes (EcSTING), and TANK-binding kinase 1 (EcTBK1). Moreover, VP128 interacted with EcSTING and EcTBK1. The interaction between VP128 and EcSTING was independent of any specific structural domain of EcSTING. Together, our results demonstrated that SGIV VP128 negatively regulated the IFN response by inhibiting EcSTING-EcTBK1 signaling for viral evasion.
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  • 文章类型: Journal Article
    新加坡石斑鱼虹彩病毒(SGIV)的高死亡率对石斑鱼养殖业构成严重威胁,并造成重大经济损失。因此,寻找有效的抗SGIV药物具有重要意义。丁香酚(C10H12O2)是一种酚类化合物,它的抗炎作用被广泛研究,抗氧化和抗病毒能力。在这项研究中,我们以石斑鱼脾细胞(GS)为体外模型,探讨了丁香酚对SGIV感染的影响及其可能的机制。我们发现用100μM丁香酚处理GS细胞4小时对SGIV表现出最佳的抑制作用。丁香酚能够通过抑制MAPK通路的激活而降低炎症因子的表达水平,同时抑制NF-κB和AP-1启动子的活性。另一方面,丁香酚通过减少细胞内ROS来减弱细胞氧化应激并促进干扰素相关基因的表达。因此,我们得出结论,丁香酚通过抗炎和抗氧化功能增强细胞免疫,从而抑制SGIV感染.
    The high mortality rate of Singapore grouper iridovirus (SGIV) posing a serious threat to the grouper aquaculture industry and causing significant economic losses. Therefore, finding effective drugs against SGIV is of great significance. Eugenol (C10H12O2) is a phenolic aromatic compound, has been widely studied for its anti-inflammatory, antioxidant and antiviral capacity. In this study, we explored the effect of eugenol on SGIV infection and its possible mechanisms using grouper spleen cells (GS) as an in vitro model. We found that treatment of GS cells with 100 μM eugenol for 4 h exhibited the optimal inhibitory effect on SGIV. Eugenol was able to reduce the expression level of inflammatory factors by inhibiting the activation of MAPK pathway and also inhibited the activity of NF-κB and AP-1 promoter. On the other hand, eugenol attenuated cellular oxidative stress by reducing intracellular ROS and promoted the expression of interferon-related genes. Therefore, we conclude that eugenol inhibits SGIV infection by enhancing cellular immunity through its anti-inflammatory and antioxidant functions.
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  • 文章类型: Journal Article
    细胞分裂素(CKs)是一组N6取代的信号分子,其生物合成和代谢已在所有生命王国中得到证明。包括脊椎动物.虽然它们在脊椎动物系统中的生物学相关性继续得到阐明,它们在外源性应用中具有广泛的治疗效果。在这项研究中,我们评估了四种类型的CKs的病毒抑制电位,包括,N6-异戊烯基腺嘌呤(iP),N6-异戊烯基腺苷(iPR),N6-异戊烯基腺苷-5'一磷酸(iPMP),和2-甲基硫醇-N6-异戊烯基腺苷(2MeSiPR)对抗ranavirus型物种,青蛙病毒3(FV3)。同时治疗和感染后,iP和iPR使病毒复制减少了33.8%和59.6%,分别,在斑块形成测定中。当CK暴露限于感染前12小时时,也观察到病毒复制减少,其中iP和iPR减少了31%和23.75%的病毒复制,分别。在72小时内,用iP和iPR处理的病毒载量也减少了48%和60%,分别,以单步骤生长曲线测量。斑块形态在体外发生了改变,由于iP和iPR治疗增加了83%和112%的斑块面积,溶解区形成在相应的治疗中也变得更加普遍。用iPMP和2MeSiPR处理对体外病毒动力学没有影响。这项研究的结果是第一个提供针对DNA病毒的CK抗病毒活性的证据,并强调了其结构对治疗研究的重要性。
    Cytokinins (CKs) are a group of N6-substituted signaling molecules whose biosynthesis and metabolism have been documented in all kingdoms of life, including vertebrates. While their biological relevance in vertebrate systems continues to be elucidated, they have broadly been documented with therapeutic effects in exogenous applications. In this study, we evaluated the virostatic potential of four types of CKs including, N6-isopentenyladenine (iP), N6-isopentenyladenosine (iPR), N6-isopentenyladenosine-5\'monophosphate (iPMP), and 2-methylthiol-N6-isopentenyladenosine (2MeSiPR) against the ranavirus type species, frog virus 3 (FV3). Following concurrent treatment and infection, iP and iPR reduced viral replication by 33.8% and 59.6%, respectively, in plaque formation assays. A decrease in viral replication was also observed when CK exposure was limited to 12 h prior to infection, where iP and iPR reduced viral replication by 31% and 23.75%, respectively. Treatment with iP and iPR was also marked by 48% and 60% decreases in viral load over 72 h, respectively, as measured in single step growth curves. Plaque morphology was altered in vitro, as iP and iPR treatment increased plaque area by 83% and 112% with lytic zone formation also becoming more prevalent in corresponding treatments. Treatment with iPMP and 2MeSiPR resulted in no effect on viral kinetics in vitro. The results of this study are the first to provide evidence of CK antiviral activity against a DNA virus and highlight the importance of their structure for therapeutic investigations.
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  • 文章类型: Journal Article
    小塑料碎片(0.1μm至5mm)或微塑料(MPs)已成为全球水生生态系统的主要污染物,研究表明,MPs暴露可能对人类和野生动植物的健康构成严重威胁。然而,迄今为止,在生命早期组织中少量积累的MPs的潜在生物学影响尚不清楚.这里,为了更现实的评估,我们使用了环保代表,轻度风化,聚对苯二甲酸乙二醇酯微塑料(PETMPs),冷冻(2-100μm)并荧光标记。我们利用两栖动物Xenopusand作为动物模型来定义PETMPs的生物分布,并确定暴露于PETMPs是否会引起抗病毒免疫的干扰。暴露于PETMPs1至14天导致可检测的PETMPs在肠道中的生物分布,ill,肝脏,和肾脏,通过荧光显微镜在整个坐骑组织上确定。PETMPs在组织中的积累速率通过新的原位酶消化和随后的过滤使用硅纳米膜进一步评估。这表明PETMPs在t肠迅速积累,肝脏和肾脏,持续一周以上。长期(1个月)的t暴露于相对低浓度的PETMPs(25μg/ml)显着增加了对病毒感染的易感性,并改变了先天抗病毒免疫,而不会引起明显的炎症。这项研究提供了证据,表明暴露于MP会对水生脊椎动物的免疫防御产生负面影响。
    Small plastic debris (0.1 μm-5 mm) or microplastics (MPs) have become major pollutants of aquatic ecosystems worldwide and studies suggest that MPs exposure can pose serious threats to human and wildlife health. However, to date the potential biological impacts of MPs accumulating in low amount in tissues during early life remains unclear. Here, for a more realistic assessment, we have used environmentally representative, mildly weathered, polyethylene terephthalate microplastics (PET MPs), cryomilled (1-100 μm) and fluorescently labelled. We leveraged the amphibian Xenopus laevis tadpoles as an animal model to define the biodistribution of PET MPs and determine whether exposure to PET MPs induce perturbations of antiviral immunity. Exposure to PET MPs for 1-14 days resulted in detectable PET MPs biodistribution in intestine, gills, liver, and kidney as determined by fluorescence microscopy on whole mount tissues. PET MPs accumulation rate in tissues was further evaluated via a novel in situ enzymatic digestion and subsequent filtration using silicon nanomembranes, which shows that PET MPs rapidly accumulate in tadpole intestine, liver and kidneys and persist over a week. Longer exposure (1 month) of tadpoles to relatively low concentration of PET MPs (25 μg/ml) significantly increased susceptibility to viral infection and altered innate antiviral immunity without inducing overt inflammation. This study provides evidence that exposure to MPs negatively impact immune defenses of aquatic vertebrates.
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