functional genome annotations

  • 文章类型: Journal Article
    背景:肺功能(PF)随着年龄的增长而逐渐下降。第一秒用力呼气量(FEV1)和用力肺活量(FVC)是肺部和心血管疾病发病率以及全因死亡率的预测因子。此外,降低PF与慢性低度全身炎症升高有关,葡萄糖代谢,身体肥胖,肌肉力量低。这可能表明PF与这些年龄相关因素之间的多效性遗传效应。
    方法:我们评估了FEV1和FVC是否与白细胞介素-6,高敏C反应蛋白,身体质量指数,肌肉(握力)力量,血浆葡萄糖,和糖基化血红蛋白3,888人(年龄范围:26-106)。我们采用性别组合和性别特异性相关的荟萃分析来测试来自两个或更多个性状的全基因组关联p值的组合是否增强了检测变异对这些相关性状共享影响的能力。
    结果:我们确定了32个PF位点,包括29个与肺功能和(i)体脂相关的新的多效性位点(CYP2U1/SGMS2),(ii)葡萄糖代谢(CBWD1/DOCK8和MMUT/CENPQ),(iii)炎症标志物(GLRA3/HPGD,TRIM9、CALN1、CTNNB1/ZNF621、GATA5/SLCO4A1/NTSR1和NPVF/C7orf31/CYCS),和(iv)肌肉力量(MAL2,AC008825.1/LINC02103,AL136418.1)。
    结论:确定的PF和年龄相关性状的基因/基因座表明它们潜在的共同遗传效应,这可以部分解释它们的表型相关性。基因表达和基因组注释数据的整合显示我们的遗传变异在肺中的富集,血,脂肪,胰腺,和肌肉,在其他人中。我们的发现强调了确定的基因/基因座在全身性炎症中的关键作用,葡萄糖代谢,强度性能,PF,和肺部疾病,参与加速的生物衰老。
    BACKGROUND: Pulmonary function (PF) progressively declines with aging. Forced expiratory volume in the first second (FEV1) and forced vital capacity (FVC) are predictors of morbidity of pulmonary and cardiovascular diseases and all-cause mortality. In addition, reduced PF is associated with elevated chronic low-grade systemic inflammation, glucose metabolism, body fatness, and low muscle strength. It may suggest pleiotropic genetic effects between PF with these age-related factors.
    METHODS: We evaluated whether FEV1 and FVC share common pleiotropic genetic effects factors with interleukin-6, high-sensitivity C-reactive protein, body mass index, muscle (grip) strength, plasma glucose, and glycosylated hemoglobin in 3,888 individuals (age range: 26-106). We employed sex-combined and sex-specific correlated meta-analyses to test whether combining genome-wide association p-values from two or more traits enhances the ability to detect variants sharing effects on these correlated traits.
    RESULTS: We identified 32 loci for PF, including 29 novel pleiotropic loci associated with pulmonary function and (i) body fatness (CYP2U1/SGMS2), (ii) glucose metabolism (CBWD1/DOCK8 and MMUT/CENPQ), (iii) inflammatory markers (GLRA3/HPGD, TRIM9, CALN1, CTNNB1/ZNF621, GATA5/SLCO4A1/NTSR1, and NPVF/C7orf31/CYCS), and (iv) muscle strength (MAL2, AC008825.1/LINC02103, AL136418.1).
    CONCLUSIONS: The identified genes/loci for PF and age-related traits suggest their underlying shared genetic effects, which can explain part of their phenotypic correlations. Integration of gene expression and genomic annotation data shows enrichment of our genetic variants in lung, blood, adipose, pancreas, and muscles, among others. Our findings highlight the critical roles of identified gene/locus in systemic inflammation, glucose metabolism, strength performance, PF, and pulmonary disease, which are involved in accelerated biological aging.
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