evaluation methods

评价方法
  • 文章类型: Journal Article
    背景:数字健康干预措施(DHIs)具有使公共最终用户,比如公民和病人,管理和改善他们的健康。尽管可用DHI的数量正在增加,在公共卫生系统中成功建立DHI的例子有限。为了抵消不使用DHI,在整合最终用户的同时,应该对它们进行全面评估。不幸的是,根据评价方法,存在很大的变异性和异质性,这就带来了方法论上的挑战。
    目的:本范围审查旨在概述当前已建立的DHI评估流程,包括方法,指标,和最终用户的参与。该审查不仅限于特定的医学领域或DHI类型,还提供了整体概述。
    方法:本范围审查是根据Arksey&O'Malley框架的JBI范围审查方法进行的,并符合PRISMA-ScR(系统审查的首选报告项目和范围审查的Meta分析扩展)指南。三个科学数据库(PubMed,Scopus,和ScienceDirect)于2023年4月进行了搜索。在评估明确针对公共最终用户的DHI时,考虑了2008年至2023年之间的英语和德语研究。研究选择的过程是由几位研究人员进行的,以避免审阅者的偏见。
    结果:搜索策略确定了9618种出版物,其中包括160个。在这些包括的文章中,得出并分析了200项评估。结果表明,在评估DHI的方法上没有共识,也没有公认的评估指标的定义或用法。这导致了各种各样的评估实践。这与现有文献的观察结果一致。发现缺乏对评估DHI的现有框架的参考。大多数纳入的研究都涉及以用户为中心的方法,并在评估过程中涉及最终用户。作为对开发和评估DHI的人员的协助,并作为思考评估DHI的适当方法的基础,我们创建了一个结果矩阵,每个DHI集群将这些结果合并在一起.此外,为DHI评估人员制定了一般性建议。
    结论:根据公共最终用户的DHI评估方法,本范围审查的结果提供了多样性和异质性的整体概述。应鼓励这些DHI的评估者参考已建立的框架或衡量标准进行论证。这将缓解数字卫生部门类似评估研究中结果的可转移性,从而增强该领域研究的连贯性和可比性。
    BACKGROUND: Digital health interventions (DHIs) have the potential to enable public end users, such as citizens and patients, to manage and improve their health. Although the number of available DHIs is increasing, examples of successfully established DHIs in public health systems are limited. To counteract the nonuse of DHIs, they should be comprehensively evaluated while integrating end users. Unfortunately, there is a wide variability and heterogeneity according to the approaches of evaluation, which creates a methodological challenge.
    OBJECTIVE: This scoping review aims to provide an overview of the current established processes for evaluating DHIs, including methods, indicators, and end-user involvement. The review is not limited to a specific medical field or type of DHI but offers a holistic overview.
    METHODS: This scoping review was conducted following the JBI methodology for scoping reviews based on the framework by Arksey & O\'Malley and complies with the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews) guidelines. Three scientific databases (PubMed, Scopus, and Science Direct) were searched in April 2023. English and German studies between 2008 and 2023 were considered when evaluating DHIs that explicitly address public end users. The process of study selection was carried out by several researchers to avoid reviewer bias.
    RESULTS: The search strategy identified 9618 publications, of which 160 were included. Among these included articles, 200 evaluations were derived and analyzed. The results showed that there is neither a consensus on the methods to evaluate DHIs nor a commonly agreed definition or usage of the evaluated indicators, which results in a broad variety of evaluation practices. This aligns with observations of the existing literature. It was found that there is a lack of references to existing frameworks for the evaluation of DHIs. The majority of the included studies referred to user-centered approaches and involved end users in the evaluation process. As assistance for people developing and evaluating DHIs and as a basis for thinking about appropriate ways to evaluate DHIs, a results matrix was created where the findings were combined per DHI cluster. Additionally, general recommendations for the evaluators of DHIs were formulated.
    CONCLUSIONS: The findings of this scoping review offer a holistic overview of the variety and heterogeneity according to the approaches of evaluation of DHIs for public end users. Evaluators of these DHIs should be encouraged to reference established frameworks or measurements for justification. This would ease the transferability of the results among similar evaluation studies within the digital health sector, thereby enhancing the coherence and comparability of research in this area.
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  • 文章类型: Journal Article
    背景:在研究试验中,参与式研究方法的使用正在增加。一旦与最终用户建立了伙伴关系,关于研究团队可以用来成功纳入最终用户反馈的过程的指导较少。当前的研究描述了使用简短的反思过程来系统地检查和评估最终用户反馈对研究行为的影响。
    方法:在共同发生的SUD(COMPASS)研究中,创伤聚焦和非创伤聚焦治疗策略对PTSD的比较有效性是一项随机对照试验,以确定创伤为重点的心理治疗与非创伤为重点的心理治疗对退伍军人事务部内同时发生的创伤后应激障碍和物质使用障碍的退伍军人的有效性。作为对COMPASS研究参与计划的补充评估的一部分,我们开发了“简短反思”过程,并将其与我们的最终用户参与方法配对。在与三个研究参与小组就收到的有关研究问题的反馈进行会议之后,与COMPASS团队进行了30分钟的半结构化讨论。为了评估小组反馈的影响,16次反射被录音,转录,快速分析,并与其他研究数据源集成。
    结果:简要反映表明,参与小组在八个方面进行了建议的更改:加强招募;完成研究评估;在研究协调员之间建立统一性;建立与退伍军人参与者的研究协调员联系;研究程序与临床实践之间的不匹配;与使用活性物质的患者的治疗师技能;治疗师倦怠;以及研究结果的传播。一些建议对研究行为产生积极影响,而另一些则影响不一。反思是迭代的,并导致了紧急过程,包括重新审视先前讨论的主题,跨面板的想法交叉授粉,当小组没有提出任何建议或建议时,在小组中引发解决方案是不可行的。
    结论:当与最终用户参与方法配对时,简短的反思可以促进对最终用户输入的系统检查,特别是当接触策略稳健时。反思为研究人员提供了一个问责论坛,让他们仔细考虑最终用户的建议,并及时改进研究行为。反思还可以促进对这些建议的评估,并揭示可以有效改善研究行为的最终用户驱动的策略。
    背景:ClinicalTrials.gov(NCT04581434),2020年10月9日;https://clinicaltrials.gov/ct2/show/study/NCT04581434?term=NCT04581434&draw=2&rank=1。
    BACKGROUND: Use of participatory research methods is increasing in research trials. Once partnerships are established with end-users, there is less guidance about processes research teams can use to successfully incorporate end-user feedback. The current study describes the use of a brief reflections process to systematically examine and evaluate the impact of end-user feedback on study conduct.
    METHODS: The Comparative Effectiveness of Trauma-Focused and Non-Trauma- Focused Treatment Strategies for PTSD among those with Co-Occurring SUD (COMPASS) study was a randomized controlled trial to determine the effectiveness of trauma-focused psychotherapy versus non-trauma-focused psychotherapy for Veterans with co-occurring posttraumatic stress disorder and substance use disorder who were entering substance use treatment within the Department of Veterans Affairs. We developed and paired a process of \"brief reflections\" with our end-user engagement methods as part of a supplemental evaluation of the COMPASS study engagement plan. Brief reflections were 30-minute semi-structured discussions with the COMPASS Team following meetings with three study engagement panels about feedback received regarding study issues. To evaluate the impact of panel feedback, 16 reflections were audio-recorded, transcribed, rapidly analyzed, and integrated with other study data sources.
    RESULTS: Brief reflections revealed that the engagement panels made recommended changes in eight areas: enhancing recruitment; study assessment completion; creating uniformity across Study Coordinators; building Study Coordinator connection to Veteran participants; mismatch between study procedures and clinical practice; therapist skill with patients with active substance use; therapist burnout; and dissemination of study findings. Some recommendations positively impact study conduct while others had mixed impact. Reflections were iterative and led to emergent processes that included revisiting previously discussed topics, cross-pollination of ideas across panels, and sparking solutions amongst the Team when the panels did not make any recommendations or recommendations were not feasible.
    CONCLUSIONS: When paired with end-user engagement methods, brief reflections can facilitate systematic examination of end-user input, particularly when the engagement strategy is robust. Reflections offer a forum of accountability for researchers to give careful thought to end-user recommendations and make timely improvements to the study conduct. Reflections can also facilitate evaluation of these recommendations and reveal end-user-driven strategies that can effectively improve study conduct.
    BACKGROUND: ClinicalTrials.gov (NCT04581434) on October 9, 2020; https://clinicaltrials.gov/ct2/show/study/NCT04581434?term=NCT04581434&draw=2&rank=1 .
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  • 文章类型: Journal Article
    在季节性冰冻地区,混凝土路面暴露于除冰盐的冻融和侵蚀循环中,这可能导致不利的服务条件和容易损坏。本文研究了抗压强度,弯曲-拉伸强度,耐磨性,渗透性,和混凝土的间距系数,考虑到各种固化条件的影响,除冰盐溶液,和质量分数对混凝土抗冻融性的影响。两种测试方法,单面法和快速冷冻法,对混凝土的抗冻融性能进行了对比分析。分析是基于表面缩放,吸水率,质量损失率,相对动态弹性模量,和相对耐久性指数。结果表明,盐溶液的存在显著恶化了冻融循环引起的混凝土损伤程度。冻融介质的使用,特别是氯化钠(NaCl),氯化钙(CaCl2),和质量分数为5%的乙酸钾(KAc),4.74%,5%,分别,对混凝土表面结垢影响最大。然而,它们对吸水率的影响不一致。当冻融介质是水时,混凝土的相对动弹性模量和相对耐久性指数分别高出9.6%和75.3%,分别,对于在20°C-95%RH条件下固化的混凝土,与在0°C-50%RH条件下固化的混凝土相比。通过结合两种冻融试验方法的结果,我们提出了一个综合的相对耐久性指数(DFw)。当暴露于5%质量分数的NaCl溶液的冻融介质中时,在0°C-50%RH条件下固化的混凝土的DFw比在20°C-95%RH条件下固化的混凝土的DFw低83.8%。为评价混凝土路面的耐盐冻融性能,建议一起使用表面缩放和DFW。
    In seasonally frozen regions, concrete pavement is exposed to cycles of freeze-thaw and erosion from de-icing salt, which can lead to unfavorable service conditions and vulnerability to damage. This paper examines the compressive strength, flexural-tensile strength, abrasion resistance, permeability, and spacing factor of concrete, taking into account the impact of various curing conditions, de-icing salt solutions, and mass fractions on the concrete\'s freeze-thaw resistance. Two test methods, the single-face method and the fast-freezing method, were used to comparatively analyze the freeze-thaw resistance of concrete. The analysis was based on the surface scaling, water absorption rate, mass loss rate, relative dynamic elastic modulus, and relative durability index. The results indicate that the presence of salt solution significantly worsened the degree of concrete damage caused by freeze-thaw cycles. The use of freeze-thaw media, specifically sodium chloride (NaCl), calcium chloride (CaCl2), and potassium acetate (KAc) at mass fractions of 5%, 4.74%, and 5%, respectively, had the greatest impact on the surface scaling of concrete. However, their effect on the water absorption rate was inconsistent. When the freeze-thaw medium was water, the concrete\'s relative dynamic elastic modulus and relative durability index were 9.6% and 75.3% higher, respectively, for concrete cured in 20 °C-95% RH conditions compared to those cured in 0 °C-50% RH conditions. We propose a comprehensive relative durability index (DFw) by combining the results of two methods of freeze-thaw tests. The DFw of concrete cured in 0 °C-50% RH conditions was 83.8% lower than that of concrete cured in 20 °C-95% RH conditions when exposed to a freeze-thaw medium of 5% mass fraction NaCl solution. To evaluate the salt freeze-thaw resistance of concrete pavement, it is recommended to use surface scaling and DFw together.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    数字干预通常使用率低,这可能反映出对用户体验的关注不足。此外,现有的评估方法在复杂干预措施的用户体验的远程研究中适用性有限,这些干预措施具有广泛的内容,并且在很长一段时间内使用。为了缓解这些挑战,我们在这里描述了一种新的定性生态瞬时评估(EMA)方法:CRTO方法(上下文,一项,重复,及时,开放式)。我们使用它来收集来自芬兰成年人(n=184)的数字干预用户体验数据,这些成年人患有经访谈确认的重度抑郁症(MDD),并参加了一项随机对照试验(RCT),该试验研究了一种新颖的12周基于游戏的数字干预抑郁症的疗效。通过回顾性访谈收集了关于用户体验的第二个数据集(n=22)。我们对CRTO方法和回顾性访谈数据进行了归纳编码,这导致了四个用户体验类别:(1)上下文使用,(2)互动引发的情感体验,(3)可用性,(四)技术问题。然后,我们使用创建的用户体验类别和模板分析一起分析这两个数据集,并定性报告结果。最后,我们将这两个数据集进行了比较。我们发现,与特别说明上下文使用的访谈数据相比,使用CRTO方法生成的数据提供了对可用性和技术类别的更多见解。与CRTO数据相比,访谈数据的情绪效价更为积极。CRTO和访谈数据均检测到55%的微观类别;20%的微观类别仅由CRTO数据检测到,25%仅由访谈数据检测到。我们发现,使用CORTO方法进行干预期间用户体验测量可以提供特定于干预的见解,从而进一步进行以用户为中心的迭代干预开发。总的来说,这些发现强调了评估方法对干预研究中获得的见解的类别和质量的影响.
    Digital interventions often suffer from low usage, which may reflect insufficient attention to user experience. Moreover, the existing evaluation methods have limited applicability in the remote study of user experience of complex interventions that have expansive content and that are used over an extensive period of time. To alleviate these challenges, we describe here a novel qualitative Ecological Momentary Assessment (EMA) method: the CORTO method (Contextual, One-item, Repeated, Timely, Open-ended). We used it to gather digital intervention user experience data from Finnish adults (n = 184) who lived with interview-confirmed major depressive disorder (MDD) and took part in a randomized controlled trial (RCT) that studied the efficacy of a novel 12-week game-based digital intervention for depression. A second dataset on user experience was gathered with retrospective interviews (n = 22). We inductively coded the CORTO method and retrospective interview data, which led to four user experience categories: (1) contextual use, (2) interaction-elicited emotional experience, (3) usability, and (4) technical issues. Then, we used the created user experience categories and Template Analysis to analyze both datasets together, and reported the results qualitatively. Finally, we compared the two datasets with each other. We found that the data generated with the CORTO method offered more insights into usability and technical categories than the interview data that particularly illustrated the contextual use. The emotional valence of the interview data was more positive compared with the CORTO data. Both the CORTO and interview data detected 55 % of the micro-level categories; 20 % of micro-level categories were only detected by the CORTO data and 25 % only by the interview data. We found that the during-intervention user experience measurement with the CORTO method can provide intervention-specific insights, and thereby further the iterative user-centered intervention development. Overall, these findings highlight the impact of evaluation methods on the categories and qualities of insights acquired in intervention research.
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  • 文章类型: Journal Article
    爱尔兰和英国的国家卫生服务为大多数社会处方服务提供资金,并发布了评估建议。然而,尚不清楚在各个服务中优先评估哪些结果,以及使用哪些评估方法来获取建议的结果。进行了一项调查,以检查爱尔兰岛上社会处方服务的评估做法。本研究采用横断面观察设计。样本是在爱尔兰岛上提供和/或管理SP服务的所有员工。问卷在全国SP会议上和网上分发。使用描述性统计分析封闭式回答问题。内容分析用于开放式问题。返回了84个可用调查(爱尔兰共和国的50%和北爱尔兰的50%)。所有受访者(100%)都同意测量SP结果的重要性。最常测量的结果是健康和幸福(89.2%)和孤独(84%)。最不经常测量的结果是参考SP的医疗保健专业人员的满意度:78.4%的受访者从未测量过此结果。最常用的测量工具是短华威爱丁堡心理健康量表,38/76(50%)受访者使用这一措施。缺乏为某些结果确定的标准化措施。例如,70%的受访者表示总是测量身体活动(PA),但只有四名受访者确定了具体的PA措施。在开放式问题中,受访者建议评估方法具有灵活性,以反映SP的复杂性和个性化重点。他们还确定需要有保护的时间来完成评估,并建议制定一项国家战略,以告知评估的优先事项。这项研究表明,爱尔兰岛在SP服务如何衡量结果方面存在很大差异,许多结果很少或从不使用标准化措施来衡量。需要就社会处方的核心成果集达成协议,以指导服务的提供和评估。
    National health services in Ireland and the UK fund the majority of social prescribing services and have issued recommendations for evaluation. However, it is not known what outcomes are prioritised for evaluation within individual services and what evaluation methods are used to capture recommended outcomes. A survey was carried out to examine evaluation practices of social prescribing services on the island of Ireland. This study used a cross-sectional observational design. The sample was all the staff involved in delivering and/or managing SP services on the island of Ireland. Questionnaires were distributed at a national SP conference and online. Closed-response questions were analysed using descriptive statistics. Content analysis was used for open-ended questions. Eighty-four usable surveys were returned (50% from the Republic of Ireland and 50% from Northern Ireland). All respondents (100%) agreed on the importance of measuring SP outcomes. The most frequently measured outcomes were health and well-being (89.2%) and loneliness (84%). The least frequently measured outcome was the satisfaction of healthcare professionals referring to SP: 78.4% of respondents never measured this outcome. The most frequently used measurement tool was the Short Warwick Edinburgh Mental Well-Being Scale, with 38/76 (50%) respondents using this measure. There was a lack of standardised measures identified for some outcomes. For example, 70% of respondents reported always measuring physical activity (PA), but only four respondents identified a specific PA measure. In open-ended questions, respondents recommended flexibility in evaluation methods to reflect the complexity and individualised focus of SP. They also identified the need for protected time to complete evaluations and recommended a national strategy to inform priorities in evaluations. This study demonstrates a wide variation on the island of Ireland on how SP services are measuring outcomes, with many outcomes rarely or never measured using standardised measures. Agreement is needed on a core outcome set for social prescribing in order to guide service delivery and evaluations.
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  • 文章类型: Journal Article
    近年来,用于工业外骨骼的外骨骼测试方法已经发展到包括模拟实验室和现场环境。生理学,运动学,和动力学指标,以及主观调查,用于评估外骨骼可用性。特别是,外骨骼的配合和可用性也会影响外骨骼的安全性及其减少肌肉骨骼损伤的有效性。本文调查了应用于外骨骼评估的测量方法的最新技术。基于外骨骼拟合的度量的名义分类,任务效率,comfort,移动性,并提出了平衡。此外,本文介绍了用于支持开发外骨骼和外骨骼护甲评估方法以评估其适合性的测试和测量方法,可用性,以及在工业任务中的有效性,例如钉住洞,加载对齐,和施加的力。最后,本文讨论了如何将指标应用于工业外骨骼的系统评估,当前的测量挑战,以及未来的研究方向。
    In recent years, exoskeleton test methods for industrial exoskeletons have evolved to include simulated laboratory and field environments. Physiological, kinematic, and kinetic metrics, as well as subjective surveys, are used to evaluate exoskeleton usability. In particular, exoskeleton fit and usability can also impact the safety of exoskeletons and their effectiveness at reducing musculoskeletal injuries. This paper surveys the state of the art in measurement methods applied to exoskeleton evaluation. A notional classification of the metrics based on exoskeleton fit, task efficiency, comfort, mobility, and balance is proposed. In addition, the paper describes the test and measurement methods used in supporting the development of exoskeleton and exosuit evaluation methods to assess their fit, usability, and effectiveness in industrial tasks such as peg in hole, load align, and applied force. Finally, the paper includes a discussion of how the metrics can be applied towards a systematic evaluation of industrial exoskeletons, current measurement challenges, and future research directions.
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  • 文章类型: Journal Article
    价格,成本和收入(PCI)是不同的经济指标,与它们所表示的价值有着内在的联系。这些可观察对象在多准则决策过程中占据中心位置,使经济主体能够客观地传达市场交换商品的主观效用。这些商品的估值在很大程度上依赖于基于PCI的经验观测值及其支持的方法。这种评估措施的准确性至关重要,因为它会影响市场链中的后续决策。然而,由于价值状态的固有不确定性,经常会出现测量误差,影响经济主体的财富,特别是在交易房地产等重要商品时。本文通过将熵测度纳入房地产估价中来解决这一问题。这种数学技术调整并集成了三重PCI估计,改善评估系统的最后阶段,其中确定的价值决策至关重要。在评估系统中使用熵还可以帮助市场代理制定明智的生产/交易策略以获得最佳回报。我们的实际演示结果表明了有希望的意义。熵与PCI估计的集成显著提高了价值测量的精度并减少了经济决策误差。
    Price, Cost and Income (PCI) are distinct economic indicators intrinsically linked to the values they denote. These observables take center stage in the multi-criteria decision-making process that enables economic agents to convey subjective utilities of market-exchanged commodities objectively. The valuation of these commodities heavily relies on PCI-based empirical observables and their supported methodologies. This valuation measure\'s accuracy is critical, as it influences subsequent decisions within the market chain. However, measurement errors often arise due to inherent uncertainties in the value state, impacting economic agents\' wealth, particularly when trading significant commodities such as real estate properties. This paper addresses this issue by incorporating entropy measurements into real estate valuation. This mathematical technique adjusts and integrates triadic PCI estimates, improving the final stage of appraisal systems where definitive value decisions are crucial. Employing entropy within the appraisal system can also aid market agents in devising informed production/trading strategies for optimal returns. The results from our practical demonstration indicate promising implications. The entropy\'s integration with PCI estimates significantly improved the value measurement\'s precision and reduced economic decision-making errors.
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  • 文章类型: Journal Article
    尽管损失和随之而来的悲伤经历在人类生活中是自然的,有些人可能很难管理这些事件,在重要的生活领域,他们的功能会受到严重损害。鉴于此,本研究旨在探索意大利语版成人悲伤态度量表(AAG)的心理测量特性,以促进对讲意大利语的人群中成人对悲伤的脆弱性的研究。367名参与者(Mage=30.44,SD=11.21;78%的女性)参与了这项研究。实施了反向翻译程序以开发意大利AAG。然后,参与者完成了意大利AAG以及一系列其他自我报告心理测量量表,以评估AAG的结构效度方面:40项防御风格问卷,事件规模的影响-修订,和贝克抑郁量表-II。发现双因素结构最适合数据,支持使用这两个一般因素的可能性(即,脆弱性)和三个维度(即,不知所措,控制,和弹性)。与原始版本不同,控制维度在意大利人口中成为“保护”因素,加上弹性因素。此外,结果为内部一致性和结构效度提供了令人满意的指示。总之,意大利AAG被证明是有效的,可靠,快,和易于使用的量表,可用于意大利的研究和临床实践。
    Although experiences of loss and the consequent grief are natural in human life, some individuals may have difficulty managing these events, to the point of developing significant impairment in their functioning in important life areas. Given this, the present research aimed to explore the psychometric properties of the Italian version of the Adult Attitude to Grief scale (AAG) to facilitate research on adult vulnerability to grief among Italian-speaking populations. A sample of 367 participants (Mage = 30.44, SD = 11.21; 78% females) participated in this research. A back-translation procedure was implemented to develop the Italian AAG. Then, participants completed the Italian AAG alongside a battery of other self-report psychometric scales in order to assess aspects of the construct validity of the AAG: the Forty-Item Defense Style Questionnaire, the Impact of Event Scale-Revised, and the Beck Depression Inventory-II. A bifactor structure was found to have the best fit to the data, supporting the possibility of using both the general factor (i.e., vulnerability) and three dimensions (i.e., overwhelmed, controlled, and resilient). Unlike the original version, the control dimension emerged as a \"protective\" factor in the Italian population, together with the resilient factor. Furthermore, results provided satisfactory indications of internal consistency and construct validity. In conclusion, the Italian AAG was shown to be a valid, reliable, quick, and easy-to-use scale that can be used both for research and clinical practice in the Italian context.
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  • 文章类型: Journal Article
    新型基于单细胞的技术有望以高通量方式将T细胞受体(TCR)序列与其同源肽-MHC识别基序相匹配。通过使用用DNA条形码标记的试剂,能够平行捕获TCR转录物和肽-MHC。然而,这种单细胞测序(SCseq)数据的分析和注释受到丢失的挑战,随机噪声,和其他必须在下游处理步骤中小心处理的技术工件。我们在这里提出一个理性的,数据驱动的方法称为ITRAP(改进的T细胞受体抗原配对)来应对这些挑战,过滤掉可能的文物,并能够生成具有高度特异性和灵敏度的大型TCR-pMHC序列数据,从而输出每个T细胞最可能的pMHC靶标。我们已经在16个健康供体中的10种不同的病毒特异性T细胞应答中验证了这种方法。在这些样本中,我们已经鉴定了来自4135个单细胞的高达1494个高置信度TCR-pMHC对。
    Novel single-cell-based technologies hold the promise of matching T cell receptor (TCR) sequences with their cognate peptide-MHC recognition motif in a high-throughput manner. Parallel capture of TCR transcripts and peptide-MHC is enabled through the use of reagents labeled with DNA barcodes. However, analysis and annotation of such single-cell sequencing (SCseq) data are challenged by dropout, random noise, and other technical artifacts that must be carefully handled in the downstream processing steps. We here propose a rational, data-driven method termed ITRAP (improved T cell Receptor Antigen Paring) to deal with these challenges, filtering away likely artifacts, and enable the generation of large sets of TCR-pMHC sequence data with a high degree of specificity and sensitivity, thus outputting the most likely pMHC target per T cell. We have validated this approach across 10 different virus-specific T cell responses in 16 healthy donors. Across these samples, we have identified up to 1494 high-confident TCR-pMHC pairs derived from 4135 single cells.
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