colon adenocarcinoma

结肠腺癌
  • 文章类型: Case Reports
    良性多囊性腹膜间皮瘤(BMPM)是一种罕见的疾病,其中患者有多个腹膜囊性病变。BMPM可以模拟粘液性癌病,因此可以造成诊断困境。我们介绍了一名76岁的女性,该女性被转诊为升结肠腺癌的治疗,在术前计算机断层扫描和诊断性腹腔镜检查中发现腹部和骨盆有多个非特异性囊性病变。冰冻切片分析提示病变含有“粘蛋白”。由于担心转移,右结肠切除术流产.腹腔镜活检的最终组织学分析显示间皮囊肿,与BMPM一致,与她的结肠腺癌无关.2周后行腹腔镜右结肠切除术。当偶然发现时,BMPM可以在已知内脏恶性肿瘤的患者中产生诊断和治疗不确定性。冻结截面分析可能无法准确区分两者,最终的组织学确认应在明确治疗之前寻求。
    Benign multicystic peritoneal mesothelioma (BMPM) is a rare condition, in which patients have multiple cystic lesions of the peritoneum. BMPM can mimic mucinous carcinomatosis and can thus create a diagnostic dilemma. We present the case of a 76-year-old woman who was referred for management of ascending colon adenocarcinoma and was noted to have several nonspecific cystic lesions in the abdomen and pelvis on preoperative computed tomography and diagnostic laparoscopy. Frozen section analysis suggested the lesions contained \'mucin\'. Due to concern for metastases, right colectomy was aborted. Final histologic analysis of the laparoscopic biopsies revealed mesothelial cysts, consistent with BMPM, unrelated to her colon adenocarcinoma. Laparoscopic right colectomy was performed 2 weeks later. BMPM can create diagnostic and therapeutic uncertainty in patients with known visceral malignancies when discovered incidentally. Frozen section analysis may not be accurate in differentiating the two, and final histologic confirmation should be sought prior to definitive treatment.
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  • 文章类型: Case Reports
    结肠腺癌(COAD)是一种恶性肿瘤类型。发热是COAD术后最常见的并发症。本研究描述了早期COAD合并癌前结肠息肉的患者的治疗方法以及术后发热的可能原因。病人是一名48岁的女性,患有间歇性便血,排便紧迫性和液体粪便。病人接受了手术治疗,从肠道中取出了一整段,其中包含一个4厘米长的肿块和一个2厘米长的坚固肿块。手术后3天内,病人的切口愈合良好,但体温升高到37.8-38.6℃。在术后第10天移除缝合线。又过了三天,发现患者手术切口的上端裂开至腹直肌前鞘。向患者提供重组人酸性成纤维细胞生长因子以促进伤口愈合。根据病理检查结果最终诊断为直肠乙状结肠交界处腺癌及癌前结肠息肉。患者给予贝伐单抗静脉注射联合盐酸伊立替康和口服卡培他滨,所有的药物每3周反复使用,共使用4个治疗周期。这种术后发热的原因被认为是慢性便血引起的贫血,并伴有深度伤口裂开和继发感染。本研究表明,低剂量和短期预防性辅助治疗对于早期COAD合并癌前结肠息肉是可行的。
    Colon adenocarcinoma (COAD) is a malignant tumor type. Fever is the most common postoperative complication of COAD. The present study described the treatment of a patient with early-stage COAD with precancerous colon polyps and the possible cause of postoperative fever. The patient was a 48-year-old woman with intermittent hematochezia, defecation urgency and liquid feces. The patient received surgical treatment, a whole segment from the intestine was removed, which contained a 4-cm-long mass and a 2-cm-long firm mass. Within 3 days after the operation, the patient\'s incision healed well, but the body temperature increased to a range of 37.8-38.6°C. The suture was removed on the 10th postoperative day. After another three days, it was discovered that the upper end of the patient\'s surgical incision split to the anterior rectus abdominis sheath. The patient was provided with recombinant human acidic fibroblast growth factor to promote wound healing. The patient was finally diagnosed with rectosigmoid junction adenocarcinoma and precancerous colon polyps according to pathological examination results. The patient was given intravenous bevacizumab combined with irinotecan hydrochloride and oral capecitabine, and all drugs were repeatedly applied every 3 weeks, and a total of four treatment cycles were used. The cause of this postoperative fever was concluded to be anemia coming from chronic hematochezia and combined with deep wound dehiscence with secondary infection. The present study showcased that low-dose and short-course prophylactic adjuvant therapy is feasible for early-stage COAD with precancerous colon polyps.
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  • 文章类型: Journal Article
    研究证实,鞘氨醇激酶1(SPHK1)/鞘氨醇1-磷酸受体(S1PRs)和血小板衍生生长因子受体(PDGFR)在肿瘤的发生和发展中起重要作用。然而,SPHK1/S1PRs和PDGFR在结肠腺癌(COAD)中的表达和临床价值尚不清楚.本研究旨在探讨SPHK1/S1PRs和PDGFRs在COAD中的表达,并进一步探讨其在预测COAD患者预后中的作用。
    使用癌症基因组图谱(TCGA)和基因型-组织表达(GTEx)数据库分析COAD患者组织中的SPHK1/S1PRs和PDGFR表达。Kaplan-Meier生存分析用于评估SPHK1/S1PRs和PDGFRs在COAD患者中的预后作用。采用Spearman相关分析评价COAD中SPHK1/S1PRs与PDGFRs的关系。然后,采用χ2检验分析SPHK1/S1PR3/PDGFRB与患者临床病理特征的相关性。此外,使用基因本体论(GO)和京都基因和基因组百科全书(KEGG)功能富集分析预测了S1PR3和PDGFRB共同调节的可能信号通路。使用最小绝对收缩和选择算子(LASSO)回归来鉴定共调节S1PR3和PDGFRB表达的hub基因。构建了基于hub基因的COPD患者预后模型。最后,研究了hub基因与肿瘤免疫细胞浸润的关系。
    COAD患者组织中SPHK1和PDGFRB的表达水平显着上调(分别为P<0.001和P<0.001)。此外,Kaplan-Meier分析显示,SPHK1和S1PR3高表达的COAD患者的总生存期(OS)短于低表达水平的COAD患者(P=0.013和P=0.005)。Spearman相关分析证实,S1PR3与PDGFRB的表达呈显著正相关(P<0.001,r=0.790)。此外,我们发现高SPHK1和PDGGRB表达水平与神经周侵袭相关(分别为P<0.001和P=0.011)。S1PR3和PDGGRB的高表达与N期显著相关(分别为P=0.002和P=0.021)。高水平的SPHK1、S1PR3和PDGFRB与淋巴结浸润相关。(分别为P=0.018,P=0.004和P=0.001)。GO和KEGG结果显示S1PR3和PDGFRB可能参与COAD细胞细胞外基质组织和细胞信号转导。五个枢纽基因,SFRP2,GPRC5B,使用LASSO回归鉴定RSPO3、FGF14和TCF7L1。生存分析显示,高危组的OS明显短于低危组。结果表明,与低危组相比,高危组的肿瘤免疫细胞显着增加。
    S1PR3和PDGFRB可能是预测COAD患者淋巴转移和不良预后的重要标志物。潜在的机制可能涉及免疫细胞浸润。
    UNASSIGNED: Studies verified that sphingosine kinase 1 (SPHK1)/sphingosine 1-phosphate receptors (S1PRs) and platelet-derived growth factor receptors (PDGFRs) play important roles in tumor occurrence and progression. However, the expression and clinical value of SPHK1/S1PRs and PDGFRs in colon adenocarcinoma (COAD) remains unclear. This study aimed to explore the expression of SPHK1/S1PRs and PDGFRs in COAD and further investigate their roles in predicting the prognosis of patients with COAD.
    UNASSIGNED: SPHK1/S1PRs and PDGFRs expression in tissues from patient with COAD were analyzed using The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases. Kaplan-Meier survival analysis was used to evaluate the prognostic roles of SPHK1/S1PRs and PDGFRs in patients with COAD. Spearman\'s correlation analysis was performed to assess the relationship between SPHK1/S1PRs and PDGFRs in COAD. Then, χ2 test was performed to analyze the correlation between SPHK1/S1PR3/PDGFRB and clinicopathological characteristics of the patients. Additionally, possible signaling pathways co-regulated by S1PR3 and PDGFRB were predicted using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional enrichment analyses. Least absolute shrinkage and selection operator (LASSO) regression was used to identify hub genes that co-regulated S1PR3 and PDGFRB expression. A prognostic model based on hub genes was constructed for patients with COPD. Finally, the relationship between the hub genes and tumor immune cell infiltration was investigated.
    UNASSIGNED: The expression levels of SPHK1 and PDGFRB were significantly upregulated in COAD patient tissues (P < 0.001 and P < 0.001, respectively). Moreover, Kaplan-Meier analysis showed that patients with COAD with high expression levels of SPHK1 and S1PR3 had shorter overall survival (OS) than those with low expression levels (P = 0.013 and P = 0.005, respectively). Spearman\'s correlation analysis verified a strong positive correlation (P < 0.001, r = 0.790) between the expression of S1PR3 and PDGFRB. In addition, we found that high SPHK1 and PDGGRB expression levels were associated with perineural invasion (P < 0.001 and P = 0.011, respectively). High expression of S1PR3 and PDGGRB was prominently associated with N stage (P = 0.002 and P = 0.021, respectively). High levels of SPHK1, S1PR3, and PDGFRB were associated with lymph node invasion. (P = 0.018, P = 0.004, and P = 0.001, respectively). GO and KEGG results revealed that S1PR3 and PDGFRB may participate in COAD cell extracellular matrix organization and cellular signal transduction. Five hub genes, SFRP2, GPRC5B, RSPO3, FGF14, and TCF7L1, were identified using LASSO regression. Survival analysis showed that the OS in the high-risk group was remarkably shorter than that in the low-risk group. The results indicated that tumor immune cells were significantly increased in the high-risk group compared to those in the low-risk group.
    UNASSIGNED: S1PR3 and PDGFRB may be important markers for predicting lymphatic metastasis and poor prognosis in patients with COAD. The underlying mechanisms may involve immune cell infiltration.
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  • 文章类型: Journal Article
    背景:Otopetrin2(OTOP2)是一种保守的离子通道蛋白,可调节细胞信号传导,增长,和发展。尽管在结肠腺癌(COAD)的一些研究中已经报道了OTOP2在肿瘤抑制中的作用,其特点是对肿瘤的免疫调节作用。方法:我们对OTOP2的表达及其与临床病理特征的关系进行了全面分析,免疫相关途径,使用来自癌症基因组图谱(TCGA)的数据,并通过组织微阵列(TMA)证实了该发现。我们进行了体外测定以证明OTOP2在COAD细胞中的肿瘤抑制作用。结果:OTOP2在多种肿瘤中表达异常,在COAD患者中表达明显下调(P<0.001)。此外,OTOP2的存在与COAD诊断患者的生存率提高相关.体外实验表明OTOP2抑制细胞增殖,迁移,入侵,和附着力。TCGA数据库的基因集富集分析表明OTOP2与抗原呈递途径和T细胞应答呈正相关。免疫表型(IPS)表明OTOP2表达与MHC分子表达呈正相关(P<0.001),OTOP2表达与效应细胞数量呈正相关(P<0.01)。TMA的免疫组织化学分析显示OTOP2表达与MHC-I之间有很强的关联,TAP1和TAP2表达,COAD患者OTOP2表达与CD8+T细胞浸润之间的关系。结论:总之,我们的研究强调了OTOP2作为肿瘤抑制因子的作用,提示其用作COAD患者免疫治疗反应的预后指标和预测指标。
    Background: Otopetrin 2 (OTOP2) is a conserved ion channel protein that regulates cell signaling, growth, and development. Although the role of OTOP2 in tumor suppression has been reported in several studies of colon adenocarcinoma (COAD), characterized its immunomodulatory effects on tumors. Methods: We conducted a thorough analysis of OTOP2 expression and its association with clinicopathological characteristics, immune-related pathways, and immune-related molecules in individuals with COAD using data from The Cancer Genome Atlas (TCGA) and confirmed the findings with tissue microarrays (TMAs). We conducted in vitro assays to demonstrate the tumor suppressive effect of OTOP2 in COAD cells. Results: OTOP2 expression was abnormal in multiple types of tumors and was significantly downregulated in patients with COAD (P<0.001). Moreover, the presence of OTOP2 was linked to enhanced survival in individuals diagnosed with COAD. In vitro experiments showed that OTOP2 suppressed cell proliferation, migration, invasion, and adhesion. Gene set enrichment analysis of the TCGA database indicated that OTOP2 was positively correlated with antigen presentation pathways and T cell responses. The immunophenoscore (IPS) indicated a positive correlation between OTOP2 expression and MHC molecule expression (P<0.001) as well as between OTOP2 expression and the number of effector cells (P<0.01). Immunohistochemical analysis of the TMAs revealed strong associations between OTOP2 expression and MHC-I, TAP1, and TAP2 expression, and between OTOP2 expression and CD8+ T cell infiltration in COAD patients. Conclusion: In summary, our research emphasizes the role of OTOP2 as a tumor suppressor, suggesting its use as a prognostic indicator and predictor of response to immunotherapy in COAD patients.
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  • 文章类型: Journal Article
    耐药性是肿瘤晚期治疗的主要障碍,也是肿瘤复发和死亡的关键危险因素。5-氟尿嘧啶(5-FU)化疗是结直肠癌患者最常见的化疗药物,尽管有很多选择。
    利用基因表达综合数据库提取HCT-8人结直肠癌野生型细胞及其5-FU诱导的耐药细胞系的表达谱数据。这些数据用于鉴定5-FU抗性相关的差异表达基因(5FRRDEGs),与癌症基因组图集计划数据库提供的结直肠腺癌(COAD)转录组数据相交。包含五个5FRRDEGs(GOLGA8A,进行Cox回归分析后,建立KLC3,TIGD1,NBPF1和SERPINE1)。我们进行了列线图开发,药物敏感性分析,肿瘤免疫微环境分析,和突变分析以评估预后质量的治疗价值。
    我们在COAD患者中确定了1665FRRDEG。随后,我们使用Cox回归分析建立了由5个5个FRRDEGs组成的预后模型.根据风险评分将COAD患者分为不同的风险组;高危组的预后较差。
    总之,基于5FRRDEG的预后模型是COAD患者靶向治疗和化疗的有效工具.它可以准确预测这些患者的生存预后,并为探索COAD的耐药机制提供方向。
    UNASSIGNED: Drug resistance is the primary obstacle to advanced tumor therapy and the key risk factor for tumor recurrence and death. 5-Fluorouracil (5-FU) chemotherapy is the most common chemotherapy for individuals with colorectal cancer, despite numerous options.
    UNASSIGNED: The Gene Expression Omnibus database was utilized to extract expression profile data of HCT-8 human colorectal cancer wild-type cells and their 5-FU-induced drug resistance cell line. These data were used to identify 5-FU resistance-related differentially expressed genes (5FRRDEGs), which intersected with the colorectal adenocarcinoma (COAD) transcriptome data provided by the Cancer Genome Atlas Program database. A prognostic signature containing five 5FRRDEGs (GOLGA8A, KLC3, TIGD1, NBPF1, and SERPINE1) was established after conducting a Cox regression analysis. We conducted nomogram development, drug sensitivity analysis, tumor immune microenvironment analysis, and mutation analysis to assess the therapeutic value of the prognostic qualities.
    UNASSIGNED: We identified 166 5FRRDEGs in patients with COAD. Subsequently, we created a prognostic model consisting of five 5FRRDEGs using Cox regression analysis. The patients with COAD were divided into different risk groups by risk score; the high-risk group demonstrated a worse prognosis than the low-risk group.
    UNASSIGNED: In summary, the 5FRRDEG-based prognostic model is an effective tool for targeted therapy and chemotherapy in patients with COAD. It can accurately predict the survival prognosis of these patients as well as to provide the direction for exploring the resistance mechanism underlying COAD.
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  • 文章类型: Journal Article
    癌症被广泛认为是人类死亡的主要原因,结肠腺癌(COAD)是最常见的类型之一。角化是一种由蛋白质脂化介导的新型细胞死亡形式。角化相关基因(CRGs)参与肿瘤的发生和发展。它们在泛癌症和COAD中的作用需要进一步研究。本研究全面评估了CRGs之间的关系,泛癌症,和COAD。我们的研究揭示了正常组织和肿瘤组织之间CRGs和角化电位指数(CPI)的差异表达,并进一步探讨了CRGs或CPI与预后的相关性,免疫浸润,肿瘤突变负荷(TMB),微卫星不稳定性(MSI),和泛癌症的药物敏感性。基因集富集分析(GSEA)显示,在大多数肿瘤的高CPI组中,氧化磷酸化和脂肪酸代谢途径显着富集。选择FDX1和CDKN2A进行进一步勘探,我们发现FDX1和CDKN2A与预后之间存在独立关联,免疫浸润,TMB,和泛癌症中的MSI。此外,建立了基于CRGs和COAD之间关联的预后风险模型,以及风险评分和预后之间的相关性,免疫相关特征,并对药物敏感性进行了分析。然后使用聚类分析将COAD分为三个亚型,以及预后亚型之间的差异,CPI,免疫相关特征,并确定药物敏感性。由于LIPT1水平与风险评分显著正相关,进行细胞学鉴定以确定LIPT1与结肠癌细胞增殖和迁移的相关性.总之,CRGs可作为预测泛癌症患者免疫浸润水平的潜在预后生物标志物。此外,风险模型能更准确地预测COAD的预后和免疫浸润水平,更好地指导临床用药方向。因此,FDX1,CDKN2A,和LIPT1可能成为癌症治疗的前瞻性新靶点。
    Cancer is widely regarded as a leading cause of death in humans, with colon adenocarcinoma (COAD) ranking among the most prevalent types. Cuproptosis is a novel form of cell death mediated by protein lipoylation. Cuproptosis-related genes (CRGs) participate in tumourigenesis and development. Their role in pan-cancer and COAD require further investigation. This study comprehensively evaluated the relationship among CRGs, pan-cancer, and COAD. Our research revealed the differential expression of CRGs and the cuproptosis potential index (CPI) between normal and tumour tissues, and further explored the correlation of CRGs or CPI with prognosis, immune infiltration, tumor mutant burden(TMB), microsatellite instability (MSI), and drug sensitivity in pan-cancer. Gene set enrichment analysis (GSEA) revealed that oxidative phosphorylation and fatty acid metabolism pathways were significantly enriched in the high CPI group of most tumours. FDX1 and CDKN2A were chosen for further exploration, and we found an independent association between FDX1 and CDKN2A and prognosis, immune infiltration, TMB, and MSI in pan-cancer. Furthermore, a prognostic risk model based on the association between CRGs and COAD was built, and the correlations between the risk score and prognosis, immune-related characteristics, and drug sensitivity were analysed. COAD was then divided into three subtypes using cluster analysis, and the differences among the subtypes in prognosis, CPI, immune-related characteristics, and drug sensitivity were determined. Due to the level of LIPT1 was notably positive related with the risk score, the cytological identification was carried out to identify the association of LIPT1 with proliferation and migration of colon cancer cells. In summary, CRGs can be used as potential prognostic biomarkers to predict immune infiltration levels in patients with pan-cancer. In addition, the risk model could more accurately predict the prognosis and immune infiltration levels of COAD and better guide the direction of clinical medication. Thus, FDX1, CDKN2A, and LIPT1 may serve as prospective new targets for cancer therapy.
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  • 文章类型: Journal Article
    建立结肠腺癌(COAD)患者铁凋亡相关的预后模型。
    来自癌症基因组图谱的COAD表达谱用作训练集,来自基因表达综合的GSE39582用作验证集。筛选COAD患者与正常对照组差异表达的铁凋亡相关基因,其次是基于铁凋亡相关基因表达水平的肿瘤亚型探索。使用最小绝对收缩和选择操作员惩罚的Cox分析构建了铁沉积评分(FS)模型。基于FS,将患者分为高危亚组和低危亚组,并预测总生存期.使用受试者工作特征曲线研究FS模型的潜在预后价值和临床特征。
    确定了24个差异表达的铁凋亡相关基因,其中四个(CYBB,PRNP,ACSL4和ACSL6)包括在预后特征中。此外,年龄,病理T分期,肿瘤复发是COAD的独立预后因素。结合三个独立预后因素的FS模型显示出最佳的预后价值(癌症基因组图谱:曲线下面积=0.897;GSE39582:曲线下面积=0.858)。
    通过将FS模型与三个重要的独立预后因素配对而构建的针对COAD患者的新型预后模型显示出有希望的临床预测价值。
    UNASSIGNED: To build a ferroptosis-related prognostic model for patients with colon adenocarcinoma (COAD).
    UNASSIGNED: COAD expression profiles from The Cancer Genome Atlas were used as the training set and GSE39582 from Gene Expression Omnibus as the validation set. Differentially expressed ferroptosis-related genes between patients with COAD and normal controls were screened, followed by tumor subtype exploration based on ferroptosis-related gene expression levels. A ferroptosis score (FS) model was constructed using least absolute shrinkage and selection operator penalized Cox analysis. Based on FS, patients were subgrouped into high- and low-risk subgroups and overall survival was predicted. The potential prognostic value of the FS model and the clinical characteristics were investigated using receiver operating characteristic curves.
    UNASSIGNED: Twenty-four differentially expressed ferroptosis-related genes were identified, four of which (CYBB, PRNP, ACSL4, and ACSL6) were included in the prognostic signature. Moreover, age, pathological T stage, and tumor recurrence were independent prognostic factors for COAD. The FS model combined with three independent prognostic factors showed the best prognostic value (The Cancer Genome Atlas: area under the curve = 0.897; GSE39582: area under the curve = 0.858).
    UNASSIGNED: The novel prognostic model for patients with COAD constructed by pairing the FS model with three important independent prognostic factors showed promising clinical predictive value.
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  • 文章类型: Journal Article
    背景:最近的研究表明,在各种肿瘤中,含DEP结构域的1B(DEPDC1B)与细胞周期之间呈正相关。然而,DEPDC1B在肿瘤免疫微环境(TIME)浸润中的作用尚待研究.
    方法:我们使用R包“limma”和基因表达谱交互式分析(GEPIA)网站分析了DEPDC1B在结肠腺癌(COAD)中的差异表达和预后意义。采用基因集富集分析(GSEA)研究COAD中DEPDC1B表达的功能和相互作用。利用细胞计数试剂盒-8(CCK-8)测定和集落形成测定来评估DEPDC1B的增殖功能。DEPDC1B表达与肿瘤浸润免疫细胞的相关性,免疫检查点,肿瘤突变负荷(TMB),使用Spearman相关分析和CIBERSORT检查微卫星不稳定性(MSI)状态。
    结果:DEPDC1B在COAD中高表达。DEPDC1B表达升高与较低的上皮-间质转化(EMT)和TNM分期相关,导致良好的预后。DEPDC1BmRNA在COAD细胞系中显著表达。CCK-8和集落形成试验证明DEPDC1B抑制COAD细胞的增殖。使用CIBERSORT数据库和Spearman相关性分析显示,DEPDC1B与四种类型的肿瘤浸润性免疫细胞相关。此外,高DEPDC1B表达与PD-L1、CTLA4、SIGLEC15、PD-L2、TMB、和MSI-H.高DEPDC1B表达还表明对抗PD-L1免疫疗法的反应性。
    结论:DEPDC1B抑制COAD细胞的增殖,正向调节细胞周期,与CCNB1和PBK表达呈正相关。DEPDC1B在COAD中的表达与肿瘤浸润免疫细胞有关,免疫检查点,TMB,和肿瘤免疫微环境中的MSI-H。这表明DEPDC1B可能作为一种新的预后标志物和COAD免疫治疗的潜在靶标。
    BACKGROUND: Recent research indicates a positive correlation between DEP structural domain-containing 1B (DEPDC1B) and the cell cycle in various tumors. However, the role of DEPDC1B in the infiltration of the tumor immune microenvironment (TIME) remains unexplored.
    METHODS: We analyzed the differential expression and prognostic significance of DEPDC1B in colon adenocarcinoma (COAD) using the R package \"limma\" and the Gene Expression Profiling Interactive Analysis (GEPIA) website. Gene set enrichment analysis (GSEA) was employed to investigate the functions and interactions of DEPDC1B expression in COAD. Cell Counting Kit-8 (CCK-8) assays and colony formation assays were utilized to assess the proliferative function of DEPDC1B. Correlations between DEPDC1B expression and tumor-infiltrating immune cells, immune checkpoints, tumor mutational burden (TMB), and microsatellite instability (MSI) status were examined using Spearman correlation analysis and CIBERSORT.
    RESULTS: DEPDC1B was highly expressed in COAD. Elevated DEPDC1B expression was associated with lower epithelial-to-mesenchymal transition (EMT) and TNM stages, leading to a favorable prognosis. DEPDC1B mRNA was prominently expressed in COAD cell lines. CCK-8 and colony formation assays demonstrated that DEPDC1B inhibited the proliferation of COAD cells. Analysis using the CIBERSORT database and Spearman correlation revealed that DEPDC1B correlated with four types of tumor-infiltrating immune cells. Furthermore, high DEPDC1B expression was linked to the expression of PD-L1, CTLA4, SIGLEC15, PD-L2, TMB, and MSI-H. High DEPDC1B expression also indicated responsiveness to anti-PD-L1 immunotherapy.
    CONCLUSIONS: DEPDC1B inhibits the proliferation of COAD cells and positively regulates the cell cycle, showing a positive correlation with CCNB1 and PBK expression. DEPDC1B expression in COAD is associated with tumor-infiltrating immune cells, immune checkpoints, TMB, and MSI-H in the tumor immune microenvironment. This suggests that DEPDC1B may serve as a novel prognostic marker and a potential target for immunotherapy in COAD.
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  • 文章类型: Journal Article
    结肠腺癌(COAD)是最常见的恶性肿瘤之一。肿瘤和免疫细胞之间涉及铁凋亡的相互作用在癌症进展中起着至关重要的作用。然而,COAD发展中这种相互作用的生物学基础仍然难以捉摸。
    从癌症基因组图谱和国家生物技术信息中心数据库获得COAD样品的转录组数据。采用单样本基因集富集分析,我们计算了每个样本的铁凋亡评分(FS)和免疫细胞浸润水平,利用与铁死亡和各种免疫细胞类型相关的基因的表达水平。FSs大于第75百分位数的样本被归类为高FS亚组,而低于第25百分位数的患者被归类为低FS亚组.此外,从20例结肠患者中收集肿瘤组织样本和邻近的正常组织样本。使用实时定量聚合酶链反应,我们验证了这些样本中某些基因的表达。
    具有高FSs的COAD样品经历了良好的生存概率和对抗癌药物的高度敏感性,FSs与病理分期呈负相关。此外,高FS亚组的上调基因在免疫相关通路中表现出富集,表明免疫力和铁中毒之间存在相关性。重要的是,我们发现了一个关键的lncRNA-mRNA共表达网络,该网络连接肿瘤细胞铁性凋亡和免疫浸润(例如,中性粒细胞)在COAD的进展和分类中。进一步的分析确定了几种与铁凋亡相关的lncRNAs(例如,RP11-399O19.9)在此网络内,表明它们在COAD进展中的潜在作用,值得深入研究。
    我们的发现为潜在的生物学基础提供了新的见解,特别是涉及到lncRNAs,在COAD和癌症治疗中与铁凋亡相关的基因表达水平。然而,需要进一步的分析和验证以扩大研究结果.
    UNASSIGNED: Colon adenocarcinoma (COAD) is one of the most common malignant tumors. The interplay involving ferroptosis between tumor and immune cells plays a crucial in cancer progression. However, the biological basis of this interplay in COAD development remains elusive.
    UNASSIGNED: Transcriptome data of COAD samples were obtained from The Cancer Genome Atlas and National Center for Biotechnology Information databases. Using single-sample gene set enrichment analysis, we calculated the ferroptosis score (FS) and immune cell infiltration levels for each sample, leveraging the expression levels of genes related to ferroptosis and various immune cell types. Samples with FSs greater than the 75th percentile were classified into the high-FS subgroup, while those below the 25th percentile were categorized as the low-FS subgroup. Moreover, tumor tissue samples and adjacent normal tissue samples were collected from twenty colon patients. Using real-time quantitative polymerase chain reaction, we validated the expression of certain genes in these samples.
    UNASSIGNED: The COAD samples with high FSs experienced favorable survival probability and heightened sensitivity to anticancer drugs, with FSs negatively associated with the pathological stages. Moreover, the up-regulated genes in high-FS subgroup exhibited enrichment in immune-related pathways, suggesting a correlation between immunity and ferroptosis. Importantly, we discovered a key lncRNA-mRNA co-expression network linking tumor cell ferroptosis and immune infiltration (e.g., neutrophil) in the progression and classification of COAD. Further analysis identified several ferroptosis-related lncRNAs (e.g., RP11-399O19.9) within this network, indicating their potential roles in COAD progression and deserving in-depth study.
    UNASSIGNED: Our findings provide novel insights into the underlying biological basis, particularly involving lncRNAs, at gene expression level associated with ferroptosis in COAD and cancer therapy. Nevertheless, further analysis and validation are required to expand the findings.
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  • 文章类型: Journal Article
    荷马蛋白同源物3(HOMER3),一个涉及生理和病理过程的因素,已被广泛研究以确定其表达水平与各种恶性肿瘤预后之间的关系。然而,HOMER3在结直肠腺癌中的意义和临床病理作用尚不清楚.
    在这项研究中,生物信息学技术用于发现高HOMER3表达水平与结直肠腺癌(COAD)患者临床病理特征之间的相关性。
    细胞实验证实,与正常细胞相比,HOMER3在肿瘤细胞中的差异表达。HOMER3过表达与COAD分期和癌胚抗原(CEA)水平显着相关。具有高HOMER3表达水平的患者具有不良预后。HOMER3表达水平可以在肿瘤组织和非肿瘤组织之间更准确地区分(AUC=0.634)。COAD组织中HOMER3基因变异率为0.7%。此外,HOMER3中22个DNA甲基化位点中的16个与COAD预后相关。我们的研究结果证实,HOMER3与COAD中的免疫细胞浸润和免疫检查点(PD-1,CTLA-4,LMTK3和LAG3)呈正相关。具体来说,我们将明确指出,虽然有统计意义,相关性的实际强度较弱。在KEGG富集分析期间,HOMER3与DLG4和SHANK1一起在谷氨酸能突触中富集。此外,预测了可以与HOMER3结合的上游microRNA。这些发现表明,HOMER3可能参与COAD的发育和免疫调节。
    HOMER3作为一种潜在的生物标志物,可以促进COAD诊断和预后评估的创新发展。
    UNASSIGNED: Homer protein homolog 3 (HOMER3), a factor implicated in both physiological and pathological processes, has been studied extensively to determine the relationship between its expression level and the prognosis of various malignancies. However, the significance and clinicopathological role of HOMER3 in colorectal adenocarcinoma remain unclear.
    UNASSIGNED: In this study, bioinformatics techniques were used to find the correlation between high HOMER3 expression levels and clinicopathological features of colorectal adenocarcinoma (COAD) patients.
    UNASSIGNED: Cellular experiments confirmed the differential expression of HOMER3 in tumor cells compared to normal cells. HOMER3 overexpression was significantly associated with COAD staging and carcinoembryonic antigen (CEA) levels. Patients with high HOMER3 expression levels have a poor prognosis. HOMER3 expression levels can be distinguished more accurately between tumor and non-tumor tissues (AUC = 0.634). The HOMER3 gene variation rate in COAD tissue was 0.7 %. Moreover, 16 of the 22 DNA methylation sites in HOMER3 were associated with COAD prognosis. Our findings confirmed that HOMER3 was positively correlated with immune cell infiltration and immune checkpoints (PD-1, CTLA-4, LMTK3, and LAG3) in COAD, Specifically, we will clearly state that while there is statistical significance, the actual strength of the correlations is weak. During KEGG enrichment analysis, HOMER3 was enriched along with DLG4 and SHANK1 in glutamatergic synapses. Additionally, upstream microRNAs that could bind to HOMER3 were predicted. These findings suggest that HOMER3 might be involved in COAD development and immune regulation.
    UNASSIGNED: HOMER3 acts as a potential biomarker that can facilitate innovative developments in the diagnosis and prognostic assessment of COAD.
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