背景:随着JN.1SARS-CoV-2变体的出现,在刺突蛋白中具有关键突变的变体,例如L455F,F456L,和R346T,已确定。在2024年1月上旬,KP.2(JN.1.11.1.2)变体首次在临床样品中被鉴定。它在全球范围内日益流行,引起了人们对其传播和临床影响的担忧。该研究调查了马哈拉施特拉邦的KP.2*(*表示KP.2及其所有子谱系)传播和临床严重程度。
方法:这项研究涉及5,173个印度SARS-CoV-2全基因组序列,收集日期为2023年11月1日至2024年6月24日。使用Nextclade软件(版本3.8.0)进行序列的谱系分析。进行电话访谈以确认人口统计细节并获得有关KP.2*病例的临床信息。使用Microsoft®Excel(MicrosoftCorporation,雷德蒙德,西澳)。
结果:在分析的5,173个序列中,JN.1*出现为主要谱系(65.96%,3412/5173),其次是KP.2*(7.83%,405/5173)和KP.1*(3.27%,169/5173)。在印度,KP.2*于2023年12月2日在奥里萨邦首次发现。大多数KP.2*序列来自马哈拉施特拉邦(248/405,61.23%),其次是西孟加拉邦(38/405,9.38%),古吉拉特邦(27/405,6.67%),和拉贾斯坦邦(24/405,5.93%)。马哈拉施特拉邦于2024年1月24日报告了其第一个KP.2*序列。临床研究包括160例来自马哈拉施特拉邦的KP.2*变体。其中,95.63%(153/160)症状轻微,如发烧(108/160,67.50%),冷(87/160,54.38%),咳嗽(80/160,50%),喉咙痛(44/160,27.5%),身体疼痛(43/160,26.88%),和疲劳(42/160,26.25%)。约33.13%(53/160)的病例需要机构隔离或住院治疗,其余的在家里管理。在那些住院的人中,50.94%(27/53)接受保守治疗,49.06%(26/53)需要补充氧气,类固醇,或者抗病毒治疗.关于疫苗接种情况,89.38%(143/160)的病例接受了至少一剂COVID-19疫苗,而10%(16/160)未接种疫苗,大多数未接种疫苗的是0至9岁的儿童(7/16,43.75%)。KP.2*病例的总回收率为99.38%(159/160),只有0.62%(1/160)死于该疾病。
结论:KP.2变体已成为印度和马哈拉施特拉邦的主要SARS-CoV-2变体。尽管受影响的个体出现轻微症状,研究表明,由于FLiRT突变,中和滴度低,感染性高,这表明KP.2有可能上升到全球主导地位。
BACKGROUND: Following the emergence of the JN.1 SARS-CoV-2 variant, variants with key mutations in the spike protein, such as L455F, F456L, and R346T, were identified. In early January 2024, the KP.2 (JN.1.11.1.2) variant was first identified in clinical samples. Its increasing global prevalence has raised concerns over its transmission and clinical impact. The study investigates KP.2*\'s (*indicates KP.2 and all its sub-lineages) spread and clinical severity in Maharashtra.
METHODS: This study involved 5,173 Indian SARS-CoV-2 whole genome sequences with collection dates between November 1, 2023 and June 24, 2024. Lineage analysis of sequences was performed using Nextclade software (version 3.8.0). Telephonic interviews were conducted to confirm the demographic details and obtain clinical information on the KP.2* cases. The obtained data were recorded and analyzed using Microsoft® Excel (Microsoft Corporation, Redmond, WA).
RESULTS: Among the 5,173 sequences analyzed, JN.1* appeared as the predominant lineage (65.96%, 3412/5173), followed by KP.2* (7.83%, 405/5173) and KP.1* (3.27%, 169/5173). In India, KP.2* was first detected on December 2, 2023, in Odisha. The majority of KP.2* sequences were from Maharashtra (248/405, 61.23%), followed by West Bengal (38/405, 9.38%), Gujarat (27/405, 6.67%), and Rajasthan (24/405, 5.93%). Maharashtra reported its first KP.2* sequences on January 24, 2024. The clinical study included 160 cases of the KP.2* variant from Maharashtra. Of these, 95.63% (153/160) presented with mild symptoms, such as fever (108/160, 67.50%), cold (87/160, 54.38%), cough (80/160, 50%), sore throat (44/160, 27.5%), body ache (43/160, 26.88%), and fatigue (42/160, 26.25%). About 33.13% (53/160) of the cases required institutional quarantine or hospitalization, with the rest managed at home. Among those hospitalized, 50.94% (27/53) received conservative treatment, while 49.06% (26/53) needed supplemental oxygen, steroids, or antiviral therapy. Regarding the vaccination status, 89.38% (143/160) of the cases had received at least one dose of the COVID-19 vaccine, whereas 10% (16/160) were unvaccinated, with the majority of the unvaccinated being children aged zero to nine years (7/16, 43.75%). The overall recovery rate for KP.2* cases was 99.38% (159/160), with only 0.62% (1/160) succumbing to the disease.
CONCLUSIONS: The KP.2 variant has become the dominant SARS-CoV-2 variant in India and Maharashtra. Despite the affected individuals experiencing mild symptoms, studies have shown lower neutralization titers and high infectivity due to FLiRT mutations, suggesting KP.2\'s potential rise to global dominance.