Respiratory Syncytial Virus Vaccines

呼吸道合胞病毒疫苗
  • 文章类型: Journal Article
    呼吸道合胞病毒(RSV)是一岁以下婴儿下呼吸道感染的主要原因。在2023/2024赛季,单克隆抗体nirsevimab可用于保护儿童免受RSV感染,西班牙已经成为世界上最早实施这一战略的国家之一。必须评估第一次运动的结果和免疫人群的不同特征,以便计划下一次运动,特别是对于那些将包括这种免疫接种的国家。我们的覆盖率很高(季节出生的人为91.5%,全球为88.3%)。对于在这个季节出生的人来说,只有4.9%的人不愿意在妇产医院接种疫苗,这意味着平均延迟27.45天。我们观察到移民人口的覆盖率较低。免疫接种的步伐很快,因为对于那些在运动开始之前出生的人来说,接种疫苗的平均时间是15.63天,健康儿童和高危儿童之间没有差异。这允许在RSV季节之前进行免疫接种(90%的追赶儿童在11月3日进行了免疫接种)。与有风险的儿童相比,健康儿童中所有免疫儿童接受nirsevimab的平均年龄较低(49.65天对232.85天)。对于那些在竞选期间出生的人来说,健康儿童的平均年龄也较低(3.14天vs14.58天).总之,我们认为在穆尔西亚地区实施nirsevimab免疫策略,西班牙,取得了成功.
    Respiratory syncytial virus (RSV) is the main cause of low respiratory tract infections in infants under one year of age. In the 2023/2024 season, the monoclonal antibody nirsevimab was available to protect children from RSV, and Spain has become one of the first countries worldwide to implement this strategy. It is essential to evaluate the results of this first campaign and different characteristics of the immunized population in order to plan next campaigns, especially for countries that are going to include this immunization. Our coverage was high (91.5% for those born during the season and 88.3% globally). For those born during the season, only 4.9% preferred not to immunize at the maternity hospital, which meant an average delay of 27.45 days. We observed a lower coverage in the population of immigrant origin. There was a rapid pace of immunization, since for those born before the beginning of the campaign the mean to be immunized was 15.63 days, without differences between healthy and at-risk children. This allows immunization before the RSV season (90% of the catch-up children had been immunized on November 3). The average age at which all the immunized children have received nirsevimab was lower in healthy children compared to those with risk conditions (49.65 versus 232.85 days). For those born during the campaign, the average age was also lower in healthy children (3.14 versus 14.58 days). In conclusion, we consider that the implementation of the immunization strategy with nirsevimab in the Region of Murcia, Spain, has been a success.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    Ad26RSV.在一项2b期研究中,preF/RSVpreF蛋白疫苗在保护老年人对抗呼吸道合胞病毒(RSV)相关下呼吸道疾病方面的作用.该研究比较了代表2b期临床研究的疫苗临床试验材料(CTM)与3期临床研究中使用的CTM的免疫原性。共有248名60-75岁的成年人,以1:1的比例随机化,接受一次剂量的3期CTM或2b期CTM。引起的不良事件(AE),未经请求的AE,并评估严重的AE(SAE)7天,28-d,接种疫苗后6个月,分别。在接种前和接种后14d测量RSVpreF-ELISA抗体滴度和RSV中和滴度。第15天CTM诱导的preF-ELISA反应,几何平均滴度,显示不劣于2b期CTM诱导的。在第15天,两组的RSV中和抗体滴度也相似。在征求的AE方面的安全性,未经请求的AE,或SAE在3期CTM和2b期CTM组之间总体相似,征询的不良事件大多为轻度至中度。未报告相关严重不良事件,没有发现安全问题。
    The Ad26.RSV.preF/RSV preF protein vaccine has previously demonstrated efficacyin protecting older adults against respiratory syncytial virus (RSV)-related lower respiratory tract disease in a phase 2b study. This study compared the immunogenicity of vaccine clinical trial material (CTM) representative of phase 2b clinical studies with CTM used in phase 3 clinical studies. A total of 248 adults aged 60-75 years, randomized in a 1:1 ratio, received one dose of either phase 3 CTM or phase 2b CTM. Solicited adverse events (AEs), unsolicited AEs, and serious AEs (SAEs) were assessed for 7-d, 28-d, and 6-month periods post-vaccination, respectively. RSV preF-ELISA antibody titers and RSV neutralizing titers were measured before and 14 d after vaccination. The phase 3 CTM-induced preF-ELISA response at Day 15, in terms of geometric mean titer, was shown to be non-inferior to that induced by phase 2b CTM. The RSV neutralizing antibody titers were also similar in the two groups at Day 15. The safety profile in terms of solicited AEs, unsolicited AEs, or SAEs was in general similar between the phase 3 CTM and phase 2b CTM groups, and solicited AEs were mostly mild to moderate in intensity. No related SAEs were reported, and no safety concerns were identified.
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  • 文章类型: Journal Article
    许多包膜病毒,比如冠状病毒,流感,和呼吸道合胞病毒(RSV),利用I类融合蛋白进入细胞。在这个过程中,蛋白质从融合前过渡到融合后状态,经历实质性和不可逆的构象变化。融合前构象在疫苗开发中反复显示出巨大的潜力。然而,这种状态的不稳定性对其在疫苗中的实际应用提出了挑战。虽然非天然二硫化物在维持预融合结构方面是有效的,鉴定稳定二硫键仍然是一项复杂的任务。这里,我们提出了一种通用的计算方法来系统地识别融合前稳定的二硫化物。我们的方法评估了二硫键的几何约束,并引入了一个排名系统来估计它们在稳定融合前构象方面的潜力。我们假设,限制构象转换的初始阶段的二硫化物可以比阻止后期展开的二硫化物提供更高的融合前状态稳定性。我们的算法在RSVF蛋白上的实施导致发现了支持我们假设的融合前稳定的二硫化物。此外,我们的顶级设计在棉鼠模型中作为疫苗候选物的评估证明了对RSV感染的强大保护作用,强调了我们疫苗开发方法的潜力。
    Numerous enveloped viruses, such as coronaviruses, influenza, and respiratory syncytial virus (RSV), utilize class I fusion proteins for cell entry. During this process, the proteins transition from a prefusion to a postfusion state, undergoing substantial and irreversible conformational changes. The prefusion conformation has repeatedly shown significant potential in vaccine development. However, the instability of this state poses challenges for its practical application in vaccines. While non-native disulfides have been effective in maintaining the prefusion structure, identifying stabilizing disulfide bonds remains an intricate task. Here, we present a general computational approach to systematically identify prefusion-stabilizing disulfides. Our method assesses the geometric constraints of disulfide bonds and introduces a ranking system to estimate their potential in stabilizing the prefusion conformation. We hypothesized that disulfides restricting the initial stages of the conformational switch could offer higher stability to the prefusion state than those preventing unfolding at a later stage. The implementation of our algorithm on the RSV F protein led to the discovery of prefusion-stabilizing disulfides that supported our hypothesis. Furthermore, the evaluation of our top design as a vaccine candidate in a cotton rat model demonstrated robust protection against RSV infection, highlighting the potential of our approach for vaccine development.
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  • 文章类型: Journal Article
    背景:最近批准的基于AS01E佐剂的呼吸道合胞病毒(RSV)融合前F蛋白的老年人疫苗(RSVPreF3OA)在≥60岁的人群中表现出对RSV相关疾病的高疗效。
    方法:这项在≥60岁人群中进行的3期研究评估了RSVPreF3OA疫苗接种后3年的免疫持久性。这里,我们描述了体液和细胞介导的免疫原性的中期结果,反应原性,和安全性,直到1年剂量后1。
    结果:总计,1653名参与者接种了疫苗。剂量1后一个月,中和滴度相对于剂量1前增加10.5倍(RSV-A)和7.8倍(RSV-B)。然后,滴度在第6个月下降到比剂量1前高4.4倍(RSV-A)和3.5倍(RSV-B)的水平,并保持3.1倍(RSV-A)和2.3倍(RSV-B)高于1年后的剂量1水平。RSVPreF3结合免疫球蛋白G水平和CD4+T细胞频率显示相似的动力学。62.2%和49.5%的参与者报告了可疑的给药部位和全身不良事件(主要是轻度至中度和短暂)。3.9%的参与者在剂量1后6个月内报告了严重不良事件;1例被认为与疫苗相关。
    结论:一种RSVPreF3OA剂量引起细胞介导的和RSV-A-和RSV-B-特异性体液免疫反应,随着时间的推移而下降,但保持在剂量1前水平以上至少1年。该疫苗具有良好的耐受性,具有可接受的安全性。临床试验注册。NCT04732871(ClinicalTrials.gov)。
    呼吸道合胞病毒(RSV)是老年人患病和住院的主要原因。GSK开发的老年人RSV疫苗最近获得批准。该疫苗具有良好的耐受性,并在至少1个RSV季节期间在≥60岁的成年人中提供针对RSV疾病的保护。在这项正在进行的研究中,我们正在评估免疫反应的强度和持久性,以及疫苗的安全性,5个国家/地区≥60岁的成年人接种疫苗后3年。这里,我们报告了1剂疫苗接种后1年的中期分析结果.总的来说,1653名参与者接种了疫苗。我们发现疫苗诱导了强烈的免疫反应,这在接种疫苗1个月后很明显,之后下降,但持续了至少1年。研究参与者最常报告注射部位疼痛,肌肉疼痛,疲倦,和头痛作为不良反应,大多为轻度至中度,持续时间短。一个严重的不良反应被认为与疫苗有关。在该研究中观察到的长期免疫应答与在至少1个RSV季节期间提供保护的疫苗一致。
    BACKGROUND: The recently approved AS01E-adjuvanted respiratory syncytial virus (RSV) prefusion F protein-based vaccine for older adults (RSVPreF3 OA) demonstrated high efficacy against RSV-related disease in ≥60-year-olds.
    METHODS: This ongoing phase 3 study in ≥60-year-olds evaluates immune persistence until 3 years after RSVPreF3 OA vaccination. Here, we describe interim results on humoral and cell-mediated immunogenicity, reactogenicity, and safety until 1 year post-dose 1.
    RESULTS: In total, 1653 participants were vaccinated. One month post-dose 1, neutralization titers increased 10.5-fold (RSV-A) and 7.8-fold (RSV-B) vs pre-dose 1. Titers then declined to levels 4.4-fold (RSV-A) and 3.5-fold (RSV-B) above pre-dose 1 at month 6 and remained 3.1-fold (RSV-A) and 2.3-fold (RSV-B) above pre-dose 1 levels after 1 year. RSVPreF3-binding immunoglobulin G levels and CD4+ T-cell frequencies showed similar kinetics. Solicited administration-site and systemic adverse events (mostly mild to moderate and transient) were reported by 62.2% and 49.5% of participants. Serious adverse events were reported by 3.9% of participants within 6 months post-dose 1; 1 case was considered vaccine related.
    CONCLUSIONS: One RSVPreF3 OA dose elicited cell-mediated and RSV-A- and RSV-B-specific humoral immune responses that declined over time but remained above pre-dose 1 levels for at least 1 year. The vaccine was well tolerated with an acceptable safety profile. Clinical Trials Registration. NCT04732871 (ClinicalTrials.gov).
    Respiratory syncytial virus (RSV) is a major cause of illness and hospitalization in older adults. An RSV vaccine for older adults developed by GSK was recently approved. The vaccine was well tolerated and provided protection against RSV disease in adults aged ≥60 years during at least 1 RSV season. In this ongoing study, we are evaluating the magnitude and durability of the immune response, as well as vaccine safety, until 3 years after vaccination of adults aged ≥60 years from 5 countries. Here, we report the results of an interim analysis until 1 year after vaccination with 1 dose. In total, 1653 participants were vaccinated. We found that the vaccine induced a strong immune response that was evident 1 month after vaccination, after which it declined but persisted for at least 1 year. Study participants most often reported pain at the injection site, muscle pain, tiredness, and headache as adverse reactions, which were mostly mild to moderate and of short duration. One serious adverse reaction was considered related to the vaccine. The long-term immune response that was observed in this study is consistent with the vaccine providing protection during at least 1 RSV season.
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  • 文章类型: Journal Article
    新批准了非佐剂二价呼吸道合胞病毒(RSV)预融合F(RSVpreF[Pfizer])蛋白亚单位疫苗,并推荐用于在2023年至2024年RSV季节妊娠320/7至366/7周的孕妇;但是,缺乏临床疫苗数据。
    评估在疫苗接种季节期间分娩的患者的产前RSV疫苗接种状态与围产期结局之间的关联。
    这项回顾性观察性队列研究是在1个医疗保健系统内的2家纽约市医院中进行的,这些患者从2023年9月22日至2024年1月31日在妊娠32周或更晚出生了单胎妊娠。
    使用从卫生系统的电子健康记录中捕获的RSVpreF疫苗进行产前RSV疫苗接种。
    主要结局是早产(PTB),定义为妊娠少于37周。次要结局包括妊娠高血压疾病(HDP),死产,小于胎龄出生体重,新生儿重症监护病房(NICU)入院,新生儿呼吸窘迫与NICU入院,新生儿黄疸或高胆红素血症,新生儿低血糖,和新生儿败血症。Logistic回归模型用于估计比值比(OR),并进行了多变量逻辑回归模型和时间依赖性协变量Cox回归模型。
    2973名孕妇(中位[IQR]年龄,34.9[32.4-37.7]年),1026人(34.5%)接受产前RSVpreF疫苗接种。15名患者在妊娠37周或更晚不适当地接种了疫苗,并被纳入未接种组。在学习期间,有产前疫苗接种证据的60例患者(5.9%)经历了PTB,而没有经历的患者为131例(6.7%)。在调整潜在的混杂因素后,产前接种疫苗与PTB风险增加无关(调整后的OR,0.87;95%CI,0.62-1.20)和解决不朽的时间偏差(危险比[HR],0.93;95%CI,0.64-1.34)。在logistic回归模型中,基于疫苗接种状态的妊娠和新生儿结局没有显着差异。但在时间依赖模型中观察到HDP的风险增加(HR,1.43;95%CI,1.16-1.77)。
    在这项针对妊娠32周或更晚分娩的孕妇的队列研究中,RSVpreF疫苗与PTB风险增加和围产期结局无关.这些数据支持产前RSVpreF疫苗接种的安全性,但有必要对HDP的风险进行进一步调查。
    UNASSIGNED: A nonadjuvanted bivalent respiratory syncytial virus (RSV) prefusion F (RSVpreF [Pfizer]) protein subunit vaccine was newly approved and recommended for pregnant individuals at 32 0/7 to 36 6/7 weeks\' gestation during the 2023 to 2024 RSV season; however, clinical vaccine data are lacking.
    UNASSIGNED: To evaluate the association between prenatal RSV vaccination status and perinatal outcomes among patients who delivered during the vaccination season.
    UNASSIGNED: This retrospective observational cohort study was conducted at 2 New York City hospitals within 1 health care system among patients who gave birth to singleton gestations at 32 weeks\' gestation or later from September 22, 2023, to January 31, 2024.
    UNASSIGNED: Prenatal RSV vaccination with the RSVpreF vaccine captured from the health system\'s electronic health records.
    UNASSIGNED: The primary outcome is preterm birth (PTB), defined as less than 37 weeks\' gestation. Secondary outcomes included hypertensive disorders of pregnancy (HDP), stillbirth, small-for-gestational age birth weight, neonatal intensive care unit (NICU) admission, neonatal respiratory distress with NICU admission, neonatal jaundice or hyperbilirubinemia, neonatal hypoglycemia, and neonatal sepsis. Logistic regression models were used to estimate odds ratios (ORs), and multivariable logistic regression models and time-dependent covariate Cox regression models were performed.
    UNASSIGNED: Of 2973 pregnant individuals (median [IQR] age, 34.9 [32.4-37.7] years), 1026 (34.5%) received prenatal RSVpreF vaccination. Fifteen patients inappropriately received the vaccine at 37 weeks\' gestation or later and were included in the nonvaccinated group. During the study period, 60 patients who had evidence of prenatal vaccination (5.9%) experienced PTB vs 131 of those who did not (6.7%). Prenatal vaccination was not associated with an increased risk for PTB after adjusting for potential confounders (adjusted OR, 0.87; 95% CI, 0.62-1.20) and addressing immortal time bias (hazard ratio [HR], 0.93; 95% CI, 0.64-1.34). There were no significant differences in pregnancy and neonatal outcomes based on vaccination status in the logistic regression models, but an increased risk of HDP in the time-dependent model was seen (HR, 1.43; 95% CI, 1.16-1.77).
    UNASSIGNED: In this cohort study of pregnant individuals who delivered at 32 weeks\' gestation or later, the RSVpreF vaccine was not associated with an increased risk of PTB and perinatal outcomes. These data support the safety of prenatal RSVpreF vaccination, but further investigation into the risk of HDP is warranted.
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  • 文章类型: Journal Article
    甲型流感病毒(IAV)和呼吸道合胞病毒(RSV)每年都会导致全球数百万例严重的呼吸道感染。能够预防传播和严重疾病的有效疫苗,是减轻全球卫生系统负担的重要措施。尽管在当前的亲本免疫接种中诱导了强烈的全身性免疫应答,这种疫苗接种策略不能促进强健的粘膜免疫应答.这里,我们研究了一种粘膜腺病毒载体疫苗在两种病原体进入位点同时处理的免疫原性和功效.为此,用编码流感衍生蛋白的腺病毒载体(Ad)鼻内免疫BALB/c小鼠,血凝素(HA)和核蛋白(NP),与编码RSV融合(F)蛋白的Ad组合。粘膜组合疫苗诱导针对两种病毒的中和抗体以及局部IgA应答。此外,该疫苗引发了针对RSV-F和IAV-NP的免疫显性表位的肺CD8和CD4组织常驻记忆T细胞(TRM)。此外,添加Ad-TGFβ或Ad-CCL17作为粘膜佐剂增强了针对保守的IAV-NP的功能性CD8TRM反应的形成。因此,联合疫苗不仅对RSV的后续感染提供保护,还可以对抗pH1N1或H3N2菌株的异亚型挑战。总之,我们在这里提出了一种用于粘膜应用的有效组合疫苗,对两种最相关的呼吸道病毒提供保护。
    Influenza A Virus (IAV) and Respiratory Syncytial Virus (RSV) are both responsible for millions of severe respiratory tract infections every year worldwide. Effective vaccines able to prevent transmission and severe disease, are important measures to reduce the burden for the global health system. Despite the strong systemic immune responses induced upon current parental immunizations, this vaccination strategy fails to promote a robust mucosal immune response. Here, we investigated the immunogenicity and efficacy of a mucosal adenoviral vector vaccine to tackle both pathogens simultaneously at their entry site. For this purpose, BALB/c mice were immunized intranasally with adenoviral vectors (Ad) encoding the influenza-derived proteins, hemagglutinin (HA) and nucleoprotein (NP), in combination with an Ad encoding for the RSV fusion (F) protein. The mucosal combinatory vaccine induced neutralizing antibodies as well as local IgA responses against both viruses. Moreover, the vaccine elicited pulmonary CD8+ and CD4+ tissue resident memory T cells (TRM) against the immunodominant epitopes of RSV-F and IAV-NP. Furthermore, the addition of Ad-TGFβ or Ad-CCL17 as mucosal adjuvant enhanced the formation of functional CD8+ TRM responses against the conserved IAV-NP. Consequently, the combinatory vaccine not only provided protection against subsequent infections with RSV, but also against heterosubtypic challenges with pH1N1 or H3N2 strains. In conclusion, we present here a potent combinatory vaccine for mucosal applications, which provides protection against two of the most relevant respiratory viruses.
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  • 文章类型: Journal Article
    最近,基于融合前F(pre-F)抗原的呼吸道合胞病毒(RSV)疫苗在美国获得批准.我们旨在开发一种基于酶联免疫吸附测定(ELISA)的方案,用于RSV疫苗的实际和大规模评估。使用腺病毒载体通过遗传重组和复制产生两种修饰的pre-F蛋白(DS-Cav1和SC-TM)。通过优化包被抗原(pre-F蛋白)的浓度来建立协议,二级抗体,和阻塞缓冲区。要验证协议,我们检查了它的准确性,精度,和特异性使用来自不同年龄组的150名参与者的血清样本和美国国立卫生研究院提供的标准血清。在线性相关分析中,涂层浓度为5和2.5μg/mL的DS-Cav1和SC-TM显示出高的测定系数(r>0.90),分别。二级抗体的浓度(碱性磷酸酶缀合的抗人免疫球蛋白G,1:2000稀释)和封闭试剂(5%脱脂乳/PBS-T)进行优化以使非特异性反应最小化。对于DS-Cav1(r=0.90)和SC-TM(r=0.86)观察到高准确性。Further,两种抗原均显示高精度(变异系数<15%)。抑制ELISA显示抗DS-Cav1和SC-TM抗体的交叉反应性,但不是与附件(G)蛋白。
    Recently, respiratory syncytial virus (RSV) vaccines based on the prefusion F (pre-F) antigen were approved in the United States. We aimed to develop an enzyme-linked immunosorbent assay (ELISA)-based protocol for the practical and large-scale evaluation of RSV vaccines. Two modified pre-F proteins (DS-Cav1 and SC-TM) were produced by genetic recombination and replication using an adenoviral vector. The protocol was established by optimizing the concentrations of the coating antigen (pre-F proteins), secondary antibodies, and blocking buffer. To validate the protocol, we examined its accuracy, precision, and specificity using serum samples from 150 participants across various age groups and the standard serum provided by the National Institute of Health. In the linear correlation analysis, coating concentrations of 5 and 2.5 μg/mL of DS-Cav1 and SC-TM showed high coefficients of determination (r > 0.90), respectively. Concentrations of secondary antibodies (alkaline phosphatase-conjugated anti-human immunoglobulin G, diluted 1:2000) and blocking reagents (5% skim milk/PBS-T) were optimized to minimize non-specific reactions. High accuracy was observed for DS-Cav1 (r = 0.90) and SC-TM (r = 0.86). Further, both antigens showed high precision (coefficient of variation < 15%). Inhibition ELISA revealed cross-reactivity of antibodies against DS-Cav1 and SC-TM, but not with the attachment (G) protein.
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  • 文章类型: Journal Article
    呼吸道合胞病毒(RSV)是世界范围内严重呼吸道疾病的主要病因,和儿科疫苗是不可用的。我们产生了一种丝状的基于RSV的病毒样颗粒(VLP),它提供了附着蛋白G的中央保守区。磷蛋白,核蛋白,和杂合融合蛋白,其中F胞外域被G中心区(GCR)取代。后者是相对保守的,并且含有受体结合位点,因此是逻辑上的疫苗靶标。所得VLP的免疫原性和功效,称为VLP-GCR,在没有佐剂的情况下使用鼻内应用在小鼠中进行检查。VLP-GCR诱导大量抗N抗体水平,但非常低的抗G抗体水平,即使接种了三次疫苗。相比之下,呈现融合前稳定融合(preF)蛋白而不是GCR的VLP诱导了高的抗F和抗核蛋白抗体水平,提示我们的GCR抗原免疫原性差。VLP-GCR疫苗接种小鼠的攻击导致体重减轻和肺部病理增加,和两个VLP在肺中诱导粘液。因此,两种VLP都不适合作为未接受RSV治疗的个体的疫苗。然而,VLP-preF增强了preF抗体的比例,并且可以在经历RSV的人群中用作多抗原粘膜加强疫苗。
    Respiratory syncytial virus (RSV) is a major cause of severe respiratory tract disease worldwide, and a pediatric vaccine is not available. We generated a filamentous RSV-based virus-like particle (VLP) that presents the central conserved region of the attachment protein G. This was achieved by co-expressing the matrix protein, phosphoprotein, nucleoprotein, and a hybrid fusion protein in which the F ectodomain was replaced with the G central region (GCR). The latter is relatively conserved and contains a receptor binding site and hence is a logical vaccine target. The immunogenicity and efficacy of the resulting VLP, termed VLP-GCR, were examined in mice using intranasal application without adjuvant. VLP-GCR induced substantial anti-N antibody levels but very low anti-G antibody levels, even after three vaccinations. In contrast, a VLP presenting prefusion-stabilized fusion (preF) protein instead of GCR induced both high anti-F and anti-nucleoprotein antibody levels, suggesting that our GCR antigen was poorly immunogenic. Challenge of VLP-GCR-vaccinated mice caused increased weight loss and lung pathology, and both VLPs induced mucus in the lungs. Thus, neither VLP is suitable as a vaccine for RSV-naive individuals. However, VLP-preF enhanced the proportion of preF antibodies and could serve as a multi-antigen mucosal booster vaccine in the RSV-experienced population.
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  • 文章类型: Journal Article
    在设计呼吸道合胞病毒(RSV)减毒活疫苗时,减毒突变可以通过生物选择或反向遗传操作开发,可能包括点突变,密码子和基因缺失,和基因组重排。减毒通常涉及减少病毒复制,由于对病毒结构和复制机制或拮抗宿主防御或引起疾病的病毒因子的直接影响。然而,减毒必须平衡减少的复制和免疫原性抗原表达。在本研究中,我们探索了一种新的方法来发现减毒突变。具体来说,我们使用蛋白质结构建模和计算方法来鉴定RSV非结构蛋白1(NS1)中的氨基酸取代,预测这些取代会导致不同水平的结构扰动.将预测会改变NS1蛋白结构的12种不同突变引入感染性病毒中,并在细胞培养物中分析对病毒mRNA和蛋白表达的影响。干扰素和细胞因子表达,和半胱天冬酶激活。我们发现使用基于结构的机器学习来预测降低NS1热力学稳定性的氨基酸取代会导致NS1功能的不同程度的损失。例如,包括减少多周期病毒复制的细胞有能力为I型干扰素,降低病毒mRNA和蛋白质的表达,和增加干扰素和细胞凋亡反应。
    When designing live-attenuated respiratory syncytial virus (RSV) vaccine candidates, attenuating mutations can be developed through biologic selection or reverse-genetic manipulation and may include point mutations, codon and gene deletions, and genome rearrangements. Attenuation typically involves the reduction in virus replication, due to direct effects on viral structural and replicative machinery or viral factors that antagonize host defense or cause disease. However, attenuation must balance reduced replication and immunogenic antigen expression. In the present study, we explored a new approach in order to discover attenuating mutations. Specifically, we used protein structure modeling and computational methods to identify amino acid substitutions in the RSV nonstructural protein 1 (NS1) predicted to cause various levels of structural perturbation. Twelve different mutations predicted to alter the NS1 protein structure were introduced into infectious virus and analyzed in cell culture for effects on viral mRNA and protein expression, interferon and cytokine expression, and caspase activation. We found the use of structure-based machine learning to predict amino acid substitutions that reduce the thermodynamic stability of NS1 resulted in various levels of loss of NS1 function, exemplified by effects including reduced multi-cycle viral replication in cells competent for type I interferon, reduced expression of viral mRNAs and proteins, and increased interferon and apoptosis responses.
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