Mendelian randomization (MR)

孟德尔随机化 (MR)
  • 文章类型: Journal Article
    2019年冠状病毒病(COVID-19)感染与心脏和血管疾病有因果关系。为了确定COVID-19与心血管疾病(CVD)之间的因果关系,我们通过一种称为方差逆加权(IVW)的方法进行了孟德尔随机化(MR)研究.在分析多个SNP时,MR可以通过IVW荟萃方法对多个基因座的影响进行荟萃。加权中位数(WM)是通过根据其权重对所有单个SNP效应值进行排名而获得的分布函数的中位数。当至少50%的信息来自有效的工具变量(IV)时,WM会产生可靠的估计。所包括的IV中的定向基因多效性是允许的,因为MR-Egger不需要通过原点的回归直线。对于MR估计,IVW,采用WM和MR-Egger。敏感性分析采用漏斗图,Cochran的Q测试,MR-Egger截距测试,MR-PRESSO,和遗漏分析。编制了与暴露于COVID-19和CVD相关的SNP。COVID-19感染的CVD,COVID-19实验室/自我报告阴性,和其他非常严重的呼吸道诊断和人群使用MR随机分配。COVID-19实验室/自我报告阴性结果和其他非常严重的呼吸道确诊病例与人群中CVD的MR分析(p>0.05);COVID-19感染到CVD(p=0.033,OR=1.001,95CI:1.000-1.001);MR-Egger结果表明COVID-19感染与CVD风险相关。这项MR研究为COVID-19感染与CVD之间的因果关系的有效性提供了初步证据。
    Infections with the coronavirus disease 2019 (COVID-19) and disorders of the heart and blood vessels are causally related. To ascertain the causal relationship between COVID-19 and cardiovascular disease (CVD), we carried out a Mendelian randomization (MR) study through a method known as inverse variance weighting (IVW). When analyzing multiple SNPs, MR can meta-aggregate the effects of multiple loci by using IVW meta-pooling method. The weighted median (WM) is the median of the distribution function obtained by ranking all individual SNP effect values according to their weights. WM yields robust estimates when at least 50% of the information originates from valid instrumental variables (IVs). Directed gene pleiotropy in the included IVs is permitted because MR-Egger does not require a regression straight line through the origin. For MR estimation, IVW, WM and MR-Egger were employed. Sensitivity analysis was conducted using funnel plots, Cochran\'s Q test, MR-Egger intercept test, MR-PRESSO, and leave-one-out analysis. SNPs related to exposure to COVID-19 and CVD were compiled. CVD for COVID-19 infection, COVID-19 laboratory/self-reported negative, and other very severe respiratory diagnosis and population were randomly assigned using MR. The COVID-19 laboratory/self-reported negative results and other very severe respiratory confirmed cases versus MR analysis of CVD in the population (p ​> ​0.05); COVID-19 infection to CVD (p ​= ​0.033, OR ​= ​1.001, 95%CI: 1.000-1.001); and the MR-Egger results indicated that COVID-19 infection was associated with CVD risk. This MR study provides preliminary evidence for the validity of the causal link between COVID-19 infection and CVD.
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  • 文章类型: Journal Article
    临床研究强调了肉鸡腿部疾病(LD)发作期间骨代谢过程的破坏和血清指标水平的异常波动。然而,这种关联是否存在遗传因果关系仍未确定.因此,这项研究的目的是使用1235测序的白羽肉鸡来识别LD发育的潜在危险因素。我们采用孟德尔随机化(MR)分析来评估骨强度(BS),骨矿物质密度(BMD),胫骨重量(TBW),胫骨长度(TBL),胫骨直径(TBD),骨灰(BA),灰分钙(AshCa),灰分磷(AshP),血清钙(Ca),血清磷(P),血清碱性磷酸酶(ALP),血清骨保护素(OPG)与LD的发生有关。令人信服的证据强调了LD发展风险与BMD降低(比值比(OR)=0.998;95%CI:0.983,0.993;P<0.001)和TBD较窄(OR=0.985,95%CI:0.975,0.994,P=0.002)之间的因果关系。此外,血清OPG浓度(OR:0.995,95%CI:0.992,0.999,P=0.008)与BMD相关(OR=0.0078,95%CI=0.0043至0.0140,P<0.001),表明ALP浓度(OR:0.988,95%CI:0.984,0.993,P<0.001)和TBD(OR=0.0046,95%CI=0.0026,0.0083,P<0.001)之间存在强大的遗传关系。此外,升高的血清钙(OR:0.564,95%CI:0.487,0.655,P<0.001)和P(OR:0.614,95%CI:0.539,0.699,P<0.001)水平与较窄的TBD相关。血清钙水平升高,P,ALP,OPG会导致骨代谢紊乱,而降低的BMD和较窄的TBD与肉鸡发展LD的风险更大。这一发现阐明了肉鸡LD的代谢危险因素,并可以提供有关LD的信息。比如骨质疏松症,在人类中。
    Clinical investigations have highlighted disruptions in bone metabolic processes and abnormal fluctuations in serum indicator levels during the onset of leg disease (LD) in broilers. However, the presence of a genetic causal relationship for this association remains undetermined. Therefore, the aim of this study is to discern the risk factors underlying LD development using 1235 sequenced white-feathered broilers. We employed Mendelian randomization (MR) analysis to assess the associations of bone strength (BS), bone mineral density (BMD), tibial bone weight (TBW), tibial bone length (TBL), tibial bone diameter (TBD), bone ash (BA), ash calcium (Ash Ca), ash phosphorus (Ash P), serum calcium (Ca), serum phosphorus (P), serum alkaline phosphatase (ALP), and serum osteoprotegerin (OPG) with the incidence of LD. Compelling evidence underscores a causal link between the risk of developing LD and decreased BMD (odds ratio (OR) = 0.998; 95% CI: 0.983, 0.993; P < 0.001) and narrower TBD (OR = 0.985, 95% CI: 0.975, 0.994, P = 0.002). Additionally, serum OPG concentrations (OR: 0.995, 95% CI: 0.992, 0.999, P = 0.008) were associated with BMD (OR = 0.0078, 95% CI = 0.0043 to 0.0140, P < 0.001), indicating a robust genetic relationship between ALP concentrations (OR: 0.988, 95% CI: 0.984, 0.993, P < 0.001) and TBD (OR = 0.0046, 95% CI = 0.0026, 0.0083, P < 0.001). Moreover, elevated serum Ca (OR: 0.564, 95% CI: 0.487, 0.655, P < 0.001) and P (OR: 0.614, 95% CI: 0.539, 0.699, P < 0.001) levels were associated with a narrower TBD. Elevated serum levels of Ca, P, ALP, and OPG contribute to disturbances in bone metabolism, while decreased BMD and narrower TBD are associated with a greater risk of developing LD in broilers. This discovery elucidates the metabolic risk factors for LD in broilers and could provide information on LDs, such as osteoporosis, in humans.
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  • 文章类型: Journal Article
    2019年冠状病毒病(COVID-19)大流行对全球公共卫生构成了巨大威胁。迄今为止,许多回顾性研究和病例报告表明,严重COVID-19与多器官疾病之间存在关联。然而,对这一现象背后因果机制的研究既不广泛也不全面。我们使用来自严重COVID-19和与七个器官相关的疾病的全基因组关联研究(GWAS)的汇总统计数据进行了蛋白质组全孟德尔随机化(MR)研究,脾,脾肝脏,心,肾,睾丸,甲状腺,基于欧洲血统。使用的主要分析方法是径向逆方差加权(径向IVW)方法,辅以逆方差加权(IVW),加权中位数(WM),MR-Egger方法。我们的发现证实了严重COVID-19与多器官相关疾病之间的关联,比如甲状腺功能减退,严格的自身免疫(HTCBSA),甲状腺疾病(TD),和格雷夫斯病(GD)。我们还发现了某些与器官相关疾病相关的蛋白质,如超氧化物歧化酶2(SOD2)和TEK受体酪氨酸激酶(TEK),也被认为是潜在的药物靶标。实施表型扫描和敏感性分析以巩固孟德尔随机化的结果。这项研究为在未来的研究中调查COVID-19引起的疾病提供了令人信服的基础。
    The coronavirus disease 2019 (COVID-19) pandemic poses an enormous threat to public health worldwide. Many retrospective studies and case reports to date have shown associations between severe COVID-19 and diseases of multi-organs. However, the research on the causal mechanisms behind this phenomenon is neither extensive nor comprehensive. We conducted a proteome-wide Mendelian randomization (MR) study using summary statistics from a Genome-Wide Association Studies (GWAS) of severe COVID-19 and diseases related to seven organs: lung, spleen, liver, heart, kidney, testis, and thyroid, based on the European ancestry. The primary analytical method used is the radial inverse variance-weighted (radial IVW) method, supplemented with the inverse variance-weighted (IVW), weighted-median (WM), MR-Egger methods. Our findings have confirmed the association between severe COVID-19 and multiple organ-related diseases, such as Hypothyroidism, strict autoimmune (HTCBSA), Thyroid disorders (TD), and Graves\' disease (GD). And we have also identified certain proteins that are associated with organ-related diseases, such as Superoxide Dismutase 2 (SOD2) and TEK Receptor Tyrosine Kinase (TEK), which are also considered potential drug targets. Phenotype scanning and sensitivity analyses were implemented to consolidate the results for Mendelian randomization. This study provides a compelling foundation for investigating COVID-19 caused diseases in future studies.
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  • 文章类型: Journal Article
    背景:人类衰老和白细胞(WBC)计数是受多种遗传因素影响的复杂性状。已经使用表观遗传时钟开发了实际年龄的预测因子。然而,表观遗传时钟和白细胞计数之间的双向因果效应尚未得到充分研究.
    方法:本研究采用孟德尔随机化(MR)分析了4个表观遗传时钟的汇总统计数据,涉及34,710名参与者。以及来自血细胞联盟的数据,包括563,946名个体。我们主要使用随机效应逆方差加权方法探索双向因果关系,补充MR方法进行综合分析。此外,应用多变量MR研究白细胞计数对表观遗传年龄加速的独立影响。
    结果:在双样本单变量MR(UVMR)分析中,根据PhenoAge,我们观察到淋巴细胞计数的减少显着加速了衰老,GrimAge,和HannumAge指标(均P<0.01,β<0),尽管它不影响内在表观遗传年龄加速(IEAA)。相反,中性粒细胞计数的增加显著提高了PhenoAge水平(β:0.38;95%CI0.14,0.61;P=1.65E-03<0.01)。反向MR显示表观遗传时钟对总体白细胞计数没有显著的因果影响。此外,在多变量MR中,淋巴细胞计数对表观遗传衰老指标的影响仍然具有统计学意义.我们还确定了中性粒细胞计数和PhenoAge之间的显著因果关系,GrimAge,和HannumAge,各自的结果显示强相关性(PhenoAgeβ:0.78;95%CI0.47,1.09;P=8.26E-07;GrimAgeβ:0.55;95%CI0.31,0.79;P=5.50E-06;HannumAgeβ:0.42;95%CI0.18,0.67;P=6.30E-04)。同样,嗜酸性粒细胞计数与HannumAge显著相关(β:0.33;95%CI0.13,0.53;P=1.43E-03<0.01)。
    结论:这些研究结果表明,在WBC中,淋巴细胞和中性粒细胞计数对PhenoAge的加速产生不可逆和独立的因果关系,GrimAge,和HannumAge.我们的发现强调了WBC在影响表观遗传时钟中的关键作用,并强调了在解释表观遗传年龄时考虑免疫参数的重要性。
    BACKGROUND: Human aging and white blood cell (WBC) count are complex traits influenced by multiple genetic factors. Predictors of chronological age have been developed using epigenetic clocks. However, the bidirectional causal effects between epigenetic clocks and WBC count have not been fully examined.
    METHODS: This study employed Mendelian randomization (MR) to analyze summary statistics from four epigenetic clocks involving 34,710 participants, alongside data from the Blood Cell Consortium encompassing 563,946 individuals. We primarily explored bidirectional causal relationships using the random-effects inverse-variance weighted method, supplemented by additional MR methods for comprehensive analysis. Additionally, multivariate MR was applied to investigate independent effects of WBC count on epigenetic age acceleration.
    RESULTS: In the two-sample univariate MR (UVMR) analysis, we observed that a decrease in lymphocyte count markedly accelerated aging according to the PhenoAge, GrimAge, and HannumAge metrics (all P < 0.01, β < 0), though it did not affect Intrinsic Epigenetic Age Acceleration (IEAA). Conversely, an increase in neutrophil count significantly elevated PhenoAge levels (β: 0.38; 95% CI 0.14, 0.61; P = 1.65E-03 < 0.01). Reverse MR revealed no significant causal impacts of epigenetic clocks on overall WBC counts. Furthermore, in multivariate MR, the impact of lymphocyte counts on epigenetic aging metrics remained statistically significant. We also identified a marked causal association between neutrophil counts and PhenoAge, GrimAge, and HannumAge, with respective results showing strong associations (PhenoAge β: 0.78; 95% CI 0.47, 1.09; P = 8.26E-07; GrimAge β: 0.55; 95% CI 0.31, 0.79; P = 5.50E-06; HannumAge β: 0.42; 95% CI 0.18, 0.67; P = 6.30E-04). Likewise, eosinophil cell count demonstrated significant association with HannumAge (β: 0.33; 95% CI 0.13, 0.53; P = 1.43E-03 < 0.01).
    CONCLUSIONS: These findings demonstrated that within WBCs, lymphocyte and neutrophil counts exert irreversible and independent causal effects on the acceleration of PhenoAge, GrimAge, and HannumAge. Our findings highlight the critical role of WBCs in influencing epigenetic clocks and underscore the importance of considering immune parameters when interpreting epigenetic age.
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  • 文章类型: Journal Article
    背景:端粒缩短和表观遗传修饰是衰老和血液病的关键因素。这项研究调查了端粒长度和表观遗传年龄加速(EAA)与血液肿瘤的关系,血细胞,和表观遗传时钟的生化标记。
    方法:本研究主要利用欧洲血统人群的全基因组关联研究作为工具变量,通过双向双样本孟德尔随机化(MR)方法探索暴露与结局之间的因果关系.MR技术包括逆方差加权(IVW),Egger先生,和加权中位数模式。使用CochranQ检验和MREgger截距评估MR中的异质性和多效性,多变量MR(MVMR)进一步验证了结论的稳健性。
    结果:我们的研究表明,端粒长度延长会显著增加多发性骨髓瘤的风险,白血病,和淋巴瘤(OR>1,P<0.05),并建立端粒长度与红细胞指数如红细胞之间的因果关系(OR=1.121,PIVW=0.034),MCH(OR=0.801,PIVW=2.046e-06),MCV(OR=0.801,PIVW=0.001),和MCHC(OR=0.813,PIVW=0.002)。此外,MVMR分析显示DNA甲基化PhenoAge加速与碱性磷酸酶之间存在关联(OR=1.026,PIVW=0.007)。
    结论:该研究阐明了端粒长度与端粒长度之间的关系,EAA,和血液恶性肿瘤,进一步强调端粒长度和EAA的预后意义。这加深了我们对血液病发病机制的认识,这可以为风险评估和治疗策略提供信息。
    BACKGROUND: Telomere shortening and epigenetic modifications are key factors in aging and hematologic diseases. This study investigates the relationship of telomere length and epigenetic age acceleration (EAA) with hematologic cancers, blood cells, and biochemical markers through the epigenetic clocks.
    METHODS: This study primarily utilizes genome-wide association studies of populations of European descent as instrumental variables, exploring the causal relationships between exposures and outcomes through a bidirectional two-sample Mendelian randomization (MR) approach. MR techniques include inverse variance weighted (IVW), MR Egger, and weighted median modes. Heterogeneity and pleiotropy in MR are assessed using Cochran\'s Q test and the MR Egger intercept, with the robustness of the conclusions further validated by multivariable MR (MVMR).
    RESULTS: Our research shows that longer telomere lengths significantly increase the risk of multiple myeloma, leukemia, and lymphoma (OR > 1, P < 0.05) and establish a causal relationship between telomere length and red blood cell indices such as RBC (OR = 1.121, PIVW = 0.034), MCH (OR = 0.801, PIVW = 2.046e-06), MCV (OR = 0.801, PIVW = 0.001), and MCHC (OR = 0.813, PIVW = 0.002). Additionally, MVMR analysis revealed an association between DNA methylation PhenoAge acceleration and alkaline phosphatase (OR = 1.026, PIVW = 0.007).
    CONCLUSIONS: The study clarifies the relationships between telomere length, EAA, and hematological malignancies, further emphasizing the prognostic significance of telomere length and EAA. This deepens our understanding of the pathogenesis of hematological diseases, which can inform risk assessment and therapeutic strategies.
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  • 文章类型: Journal Article
    代谢综合征表现出与各种神经系统疾病的关联,其对大脑皮层的潜在影响可能是导致这些不良后果的众多潜在因素之一。在这项研究中,本研究采用孟德尔随机化分析,探讨代谢综合征与大脑皮层结构变化之间的因果关系.代谢综合征5种成分的全基因组关联研究数据来自英国生物库的欧洲血统个体。34个已知皮质功能区的全基因组关联研究数据来自ENIGMA联盟。关于阿尔茨海默病的数据,严重的抑郁症,和焦虑症从IEU开放全基因组关联研究数据库获得。代谢综合征要素与大脑皮层结构之间的因果关系使用方差逆加权进行评估,孟德尔随机化-Egger,和加权中位数技术,以方差倒数加权为主要方法。反向方差加权,孟德尔随机化Egger,加权中位数,简单模式,和加权模式方法被用来评估代谢综合征和神经系统疾病(阿尔茨海默病,严重的抑郁症,和焦虑症)。异常值,异质性,使用CochranQ检验评估多效性,MR-PRESSO,遗漏分析,和漏斗图。全球范围内,未发现代谢综合征与总皮质厚度或表面积之间存在因果关系.然而,区域性,代谢综合征可能会影响特定区域的表面积,包括尾前扣带回,postcentral,后扣带回,前扣带,峡部扣带回,上顶叶,前额叶中部,中颞叶,脑岛,parsopercularis,Cuneus,和下颞叶。它也可能影响内侧眶额的厚度,尾部中部额叶,paracentral,上额叶,上顶叶,和上边缘区域。这些发现名义上是显著的,经受住了敏感性分析,没有实质性的异质性或多效性。此外,我们发现代谢综合征与阿尔茨海默病的风险之间存在关联,严重的抑郁症,和焦虑症。这项研究表明,代谢综合征与大脑皮层结构变化之间存在潜在的关联,这可能是某些神经系统疾病的基础。此外,我们发现代谢综合征与阿尔茨海默病的风险之间存在关联,严重的抑郁症,和焦虑症。代谢综合征的早期诊断对于预防这些神经系统疾病具有重要意义。
    Metabolic syndrome exhibits associations with diverse neurological disorders, and its potential influence on the cerebral cortex may be one of the many potential factors contributing to these adverse outcomes. In this study, we aimed to investigate the causal relationship between metabolic syndrome and changes in cerebral cortex structure using Mendelian randomization analysis. Genome-wide association study data for the 5 components of metabolic syndrome were obtained from individuals of European descent in the UK Biobank. Genome-wide association study data for 34 known cortical functional regions were sourced from the ENIGMA Consortium. Data on Alzheimer\'s disease, major depression, and anxiety disorder were obtained from the IEU Open genome-wide association study database. The causal links between metabolic syndrome elements and cerebral cortex architecture were evaluated using inverse variance weighting, Mendelian randomization-Egger, and weighted median techniques, with inverse variance weighting as the primary method. Inverse variance weighting, Mendelian randomization Egger, weighted median, simple mode, and weighted mode methods were employed to assess the relationships between metabolic syndrome and neurological diseases (Alzheimer\'s disease, major depression, and anxiety disorder). Outliers, heterogeneity, and pleiotropy were assessed using Cochran\'s Q test, MR-PRESSO, leave-one-out analysis, and funnel plots. Globally, no causal link was found between metabolic syndrome and overall cortical thickness or surface area. However, regionally, metabolic syndrome may influence the surface area of specific regions, including the caudal anterior cingulate, postcentral, posterior cingulate, rostral anterior cingulate, isthmus cingulate, superior parietal, rostral middle frontal, middle temporal, insula, pars opercularis, cuneus, and inferior temporal. It may also affect the thickness of the medial orbitofrontal, caudal middle frontal, paracentral, superior frontal, superior parietal, and supramarginal regions. These findings were nominally significant and withstood sensitivity analyses, showing no substantial heterogeneity or pleiotropy. Furthermore, we found an association between metabolic syndrome and the risk of Alzheimer\'s disease, major depression, and anxiety disorder. This study suggests a potential association between metabolic syndrome and changes in cerebral cortex structure, which may underlie certain neurological disorders. Furthermore, we found an association between metabolic syndrome and the risk of Alzheimer\'s disease, major depression, and anxiety disorder. Early diagnosis of metabolic syndrome holds significance in preventing these neurological disorders.
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  • 文章类型: Journal Article
    观察性流行病学研究表明,哮喘和败血症之间存在潜在的关联,尽管这两个条件之间的因果关系仍然不确定。为了进一步调查这种关系,本研究利用孟德尔随机化(MR)分析方法来探索哮喘与各种类型脓毒症之间的潜在联系.
    在大规模的全基因组关联研究中,选择与哮喘相关的单核苷酸多态性(SNPs)作为辅助变量.三种方法,包括逆方差加权(IVW),MR-Egger回归,和加权中位数用于评估哮喘和脓毒症之间的因果关系.比值比(OR)和95%置信区间(CI)作为因果关系的评价指标,并进行敏感性分析以评估多效性和仪器有效性。最后,我们进行了反向MR分析,以调查脓毒症和哮喘之间是否存在因果关系.
    我们发现哮喘与脓毒症风险增加呈正相关(OR=1.18,P<0.05),链球菌败血症(OR=1.23,P=0.04),肺炎相关性脓毒症(OR=1.57,P<0.05),肺炎球菌性败血症(OR=1.58,P=0.01),其他脓毒症(OR=1.15,P<0.05),重症监护病房(ICU)中的脓毒症(OR=1.23,P=0.02)。敏感性分析显示结果一致,没有异质性或多效性。反向MR分析显示各种类型的败血症和哮喘之间没有因果关系。
    我们的研究表明哮喘与不同类型的败血症之间存在因果关系。这些发现表明,医疗保健提供者关注哮喘患者败血症的潜在风险并及时实施适当的预防和干预措施的重要性。
    UNASSIGNED: Observational epidemiological studies have indicated a potential association between asthma and sepsis, although the causal relationship between these 2 conditions remains uncertain. To further investigate this relationship, the present study utilized Mendelian randomization (MR) analysis approach to explore the potential links between asthma and various types of sepsis.
    UNASSIGNED: In a large-scale genome-wide association study, single nucleotide polymorphisms (SNPs) associated with asthma were selected as instrumental variables. Three methods, including inverse-variance weighted (IVW), MR-Egger regression, and weighted median were used to assess the causal relationship between asthma and sepsis. The odds ratio (OR) and 95% confidence interval (CI) were used as the evaluation metrics for causal relationships, and sensitivity analysis was conducted to assess pleiotropy and instrument validity. Finally, a reverse MR analysis was conducted to investigate whether there is a causal relationship between sepsis and asthma.
    UNASSIGNED: We found a positive association between asthma and an increased risk of sepsis (OR=1.18, P<0.05), streptococcal sepsis (OR=1.23, P=0.04), pneumonia-related sepsis (OR=1.57, P<0.05), pneumococcal sepsis (OR=1.58, P=0.01), other sepsis (OR=1.15, P<0.05), and sepsis in intensive care unit (ICU) settings (OR=1.23, P=0.02). Sensitivity analysis showed consistent results without heterogeneity or pleiotropy. The reverse MR analysis reveals no causal relationship between various types of sepsis and asthma.
    UNASSIGNED: Our study demonstrates a causal relationship between asthma and different types of sepsis. These findings suggest the importance of healthcare providers paying attention to the potential risk of sepsis in asthma patients and implementing appropriate preventive and intervention measures in a timely manner.
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  • 文章类型: Journal Article
    观察性研究表明,心率(HR),心率变异性(HRV),P波终端力,P波持续时间,T波振幅和PR间期与心房颤动(AF)或心动过缓的危险因素有关。心律失常与许多住院原因有关。然而,观察性研究容易受到尚未确定的混杂因素的影响.本研究的目的是通过孟德尔随机化分析阐明因果关系。
    我们使用来自欧洲人群的全基因组关联研究(GWAS)数据进行了双样本和多变量孟德尔随机化(MVMR)分析,以评估HR的总体和直接因果关系。三个HRV性状,P波终端力,P波持续时间,五导联模式下的T波顶部振幅,和房颤风险的PR间期(N=191,205),心动过缓(N=463,010),室上性心动过速(SVT)(N=463,010)。
    单变量MR分析的结果揭示了以下显着的因果效应:遗传预测的PR间隔越高,房颤风险越低;HR和T波顶振幅越高(aVR导联和V3+V4+aVL导联),心动过缓的风险越低;HR越高,PR间期越低,SVT的风险越高。多变量MR结果表明,正常到正常(SDNN)间隔的HRV_标准偏差对AF风险具有独立的因果关系[比值比(OR):0.515;95%置信区间(CI):0.278-0.954;P=0.03],aVR导联的T波顶振幅(OR:0.998;95%CI:0.996-0.999;P<0.001)和HRV_SDNN(OR:0.988;95%CI:0.976-1.000;P=0.045)对心动过缓的风险具有独立的因果关系。
    HRV_SDNN对AF有独立的因果效应,而在aVR导联中HRV_SDNN和T波顶振幅对心动过缓有独立的因果效应,这表明某些心电图参数对房颤和心动过缓的发生具有预防作用。
    UNASSIGNED: Observational studies have shown that heart rate (HR), heart rate variability (HRV), P-wave terminal force, P-wave duration, T-wave amplitude and PR interval are associated with risk factors for atrial fibrillation (AF) or bradycardia. Arrhythmias are associated with many causes of hospitalization. However, observational studies are susceptible to confounding factors that have not yet been identified. The objective of this study was to clarify the causal relationships by Mendelian randomization analysis.
    UNASSIGNED: We conducted a two-sample and multivariate Mendelian randomization (MVMR) analysis using genome-wide association study (GWAS) data from a European population to assess the total and direct causal effects of HR, three HRV traits, P-wave terminal force, P-wave duration, T-wave top amplitude in five-lead modes, and the PR interval on the risk of AF (N=191,205), bradycardia (N=463,010), and supraventricular tachycardia (SVT) (N=463,010).
    UNASSIGNED: The results of the univariate MR analysis revealed the following significant causal effects: the higher the genetically predicted PR interval, the lower the risk of AF; the higher the HR and T-wave top amplitude (aVR leads and V3 + V4 + aVL leads), the lower the risk of bradycardia; and the higher HR and the lower PR interval, the higher the risk of SVT. The multivariate MR results indicated that the HRV_standard deviation of the normal-to-normal (SDNN) interval had an independent causal effect on the risk of AF [odds ratio (OR): 0.515; 95% confidence interval (CI): 0.278-0.954; P=0.03], and the T-wave top amplitude in the aVR leads (OR: 0.998; 95% CI: 0.996-0.999; P<0.001) and the HRV_SDNN (OR: 0.988; 95% CI: 0.976-1.000; P=0.045) had independent causal effects on the risk of bradycardia.
    UNASSIGNED: The HRV_SDNN had an independent causal effect on AF, while the HRV_SDNN and T-wave top amplitude in the aVR leads had independent causal effects on bradycardia, which suggests that some of the electrocardiographic parameters have preventive effects on the incidence of AF and bradycardia.
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  • 文章类型: Journal Article
    背景:先前的研究揭示了昼夜节律对肺部疾病的潜在影响;但是,昼夜节律相关的甲状腺功能胚胎因子(TEF)与肺动脉高压(PAH)之间的联系尚不清楚.我们旨在通过利用两组遗传工具变量(IV)和公开可用的肺动脉高压全基因组关联研究(GWAS)来评估TEF和PAH之间的遗传因果关系。
    方法:使用来自最近MR报告和PAHGWAS的23个独立TEF遗传IVs,包括162,962个欧洲个体进行了这项双样本MR研究。使用功能增益和功能丧失实验来证明TEF在PAH中的作用。
    结果:我们的分析表明,随着TEF水平的增加,PAH的风险相应增加,IVW(OR=1.233,95%CI:1.054-1.441;P=0.00871)和加权中位数(OR=1.292,95%CI为OR:1.064-1.568;P=0.00964)。此外,TEF表达上调与昼夜节律异常的可能性显著升高相关(IVW:P=0.0024733,β=0.05239)。然而,我们没有观察到昼夜节律与PAH之间的显着正相关(IVW:P=0.3454942,β=1.4980398)。此外,我们的体外实验表明,TEF在肺动脉平滑肌细胞(PASMC)中明显过表达。TEF的过表达促进PASMC的活力和迁移能力,以及上调炎症细胞因子的水平。
    结论:我们的分析表明,基因TEF水平升高与PAH和昼夜节律异常的风险升高之间存在因果关系。因此,较高的TEF水平可能是PAH患者的危险因素.
    BACKGROUND: Previous research has revealed the potential impact of circadian rhythms on pulmonary diseases; however, the connection between circadian rhythm-associated Thyrotroph Embryonic Factor (TEF) and Pulmonary Arterial Hypertension (PAH) remains unclear. We aim to assess the genetic causal relationship between TEF and PAH by utilizing two sets of genetic instrumental variables (IV) and publicly available Pulmonary Arterial Hypertension Genome-Wide Association Studies (GWAS).
    METHODS: Total of 23 independent TEF genetic IVs from recent MR reports and PAH GWAS including 162,962 European individuals were used to perform this two-sample MR study. Gain- and loss-of-function experiments were used to demonstrate the role of TEF in PAH.
    RESULTS: Our analysis revealed that as TEF levels increased genetically, there was a corresponding increase in the risk of PAH, as evidenced by IVW (OR = 1.233, 95% CI: 1.054-1.441; P = 0.00871) and weighted median (OR = 1.292, 95% CI for OR: 1.064-1.568; P = 0.00964) methods. Additionally, the up-regulation of TEF expression was associated with a significantly higher likelihood of abnormal circadian rhythm (IVW: P = 0.0024733, β = 0.05239). However, we did not observe a significant positive correlation between circadian rhythm and PAH (IVW: P = 0.3454942, β = 1.4980398). In addition, our in vitro experiments demonstrated that TEF is significantly overexpressed in pulmonary artery smooth muscle cells (PASMCs). And overexpression of TEF promotes PASMC viability and migratory capacity, as well as upregulates the levels of inflammatory cytokines.
    CONCLUSIONS: Our analysis suggests a causal relationship between genetically increased TEF levels and an elevated risk of both PAH and abnormal circadian rhythm. Consequently, higher TEF levels may represent a risk factor for individuals with PAH.
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  • 文章类型: Journal Article
    不同的饮食习惯会对人体健康和新陈代谢产生不同的影响,这些可以被干预和调节。肾结石,作为一种由多种因素引起的疾病,主要归因于饮食和新陈代谢,但与饮食摄入习惯的潜在因果关系尚不清楚.因此,这项研究旨在将基于45个遗传因素的预测饮食摄入量与尿石症联系起来,并探讨潜在的因果关系。
    我们从英国生物库研究中提取了有关45种饮食摄入性状的完整全基因组关联研究(GWASs)数据。肾结石的数据来自FinnGen数据库。在单变量和多变量孟德尔随机化分析中,我们使用逆方差加权(IVW)作为计算P值的主要方法,赔率比(OR),和95%置信区间(CI)。我们使用Cochran的Q检验检验了结果的异质性。我们还使用孟德尔随机化(MR)-PRESSO和MR-Egger方法仔细研究了水平多效性的潜在来源,并对校正后的P值进行了连锁不平衡评分回归(LDSC)分析。
    通过单变量分析,在45个检查的特征中,我们确定了11个可能与肾结石有因果关系的饮食习惯,包括9个保护因素和2个危险因素。根据错误发现率(FDR)和敏感性分析的校正结果,我们发现了一个相对有力的证据.我们控制了常见的结石风险因素,比如体重指数和吸烟,作为多变量分析中的混杂因素,在控制这些混杂因素后,没有观察到显著的结果。根据LDSC分析,大多数证据支持在具有潜在因果关联的11个性状中与尿石症具有显著的遗传相关性。
    这项研究证实了某些饮食因素对肾结石发展的影响。我们的发现有助于为日常生活中的饮食调整或专门针对肾结石患者的饮食指导提供证据。
    UNASSIGNED: Different dietary habits can have varying effects on human health and metabolism, and these can be intervened and regulated. Kidney stones, as a disease caused by multiple factors, are largely attributed to diet and metabolism, but the potential causal relationship with dietary intake habits remains unclear. Therefore, this study aims to link the predicted dietary intake based on 45 genetic factors with urolithiasis and explore the potential causal relationship.
    UNASSIGNED: We extracted complete genome-wide association studies (GWASs) data on 45 dietary intake traits from the UK Biobank study. Data on kidney stones were obtained from the FinnGen database. In both univariable and multivariable Mendelian randomization analyses, we used inverse variance weighted (IVW) as the primary method to calculate P values, odds ratios (ORs), and 95% confidence intervals (CIs). We examined result heterogeneity using Cochran\'s Q test. We also carefully investigated potential sources of horizontal pleiotropy using the Mendelian randomization (MR)-PRESSO and MR-Egger methods, and conducted linkage disequilibrium score regression (LDSC) analysis on the corrected P values.
    UNASSIGNED: Through univariable analysis, we identified 11 dietary habits that potentially causally associate with kidney stones among the 45 examined traits, including 9 protective factors and 2 risk factors. Based on the corrected results with false discovery rate (FDR) and sensitivity analysis, we found one relatively robust evidence. We controlled for common stone risk factors, such as body mass index and smoking, as confounders in multivariable analysis, and no significant results were observed after controlling for these confounders. Based on the LDSC analysis, most of the evidence supports significant genetic correlations with urolithiasis among the 11 traits with potential causal associations.
    UNASSIGNED: This study confirms the impact of certain dietary factors on the development of kidney stones. Our findings contribute to providing evidence for dietary adjustments in daily life or dietary guidance specifically targeting kidney stone patients.
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