Insulin-Like Growth Factor Binding Protein 5

  • 文章类型: Journal Article
    本研究探讨老年盆腔器官脱垂(POP)患者阴道前壁组织中胰岛素样生长因子结合蛋白5(IGFBP5)和细胞外基质(ECM)相关蛋白的表达及意义。从28例POP患者和20例无POP患者中收集阴道前壁组织。采用免疫组织化学方法检测IGFBP5和ECM相关蛋白在阴道壁组织中的表达及mRNA水平,西方印迹,和RT-qPCR技术。然后将表达水平与临床参数进行比较。IGFBP5、I型胶原的蛋白和mRNA表达水平,POP组Ⅲ型胶原显著降低。POP组MMP2蛋白和mRNA表达水平明显增高。IGFBP5蛋白和mRNA表达水平与年龄呈负相关,老年POP患者(≥65岁)明显低于年轻POP患者(<65岁)。与POP-QIII期患者相比,POP-QIV期患者的IGFBP5蛋白和mRNA表达水平也显着降低。IGFBP5的表达水平与年龄和脱垂的严重程度呈负相关。IGFBP5表达的显著下降可能在衰老过程和POP的发生中起着至关重要的作用。
    This study aimed to investigate the expression and significance of insulin-like growth factor binding protein 5 (IGFBP5) and extracellular matrix (ECM) related proteins in anterior vaginal wall tissues among aged pelvic organ prolapse (POP) patients. Tissues from the anterior vaginal wall were collected from 28 patients with POP and 20 patients without POP. The expression of protein and mRNA levels of IGFBP5 and ECM related proteins were evaluated in the vaginal wall tissues using immunohistochemistry, western blotting, and RT-qPCR techniques. The expression levels were then compared with clinical parameters. The expression levels of protein and mRNA of IGFBP5, collagen I, and collagen III were significantly lower in the POP group. Protein and mRNA expression levels of MMP2 were significantly higher in the POP group. IGFBP5 protein and mRNA expression levels were negatively correlated with age and significantly lower in older POP patients (≥ 65 years old) compared to younger POP patients (< 65 years old). IGFBP5 protein and mRNA expression levels were also significantly lower in POP-Q stage IV patients compared to POP-Q stage III patients. IGFBP5 expression level is negatively correlated with the age and severity of prolapse. The significant decrease in IGFBP5 expression may play a crucial part in the aging process and the occurrence of POP.
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  • 文章类型: Journal Article
    背景:血管生成对于从血管开始形成新血管至关重要。内皮对血管生成至关重要,血管重塑和缺血后功能缺陷的最小化。胰岛素样生长因子(IGF)家族对血管生成至关重要。胰岛素样生长因子结合蛋白5(IGFBP5),IGF家族的一种结合蛋白,可能有血管生成的地方,但是机制还没有完全理解。我们试图探索IGFBP5是否参与病理性血管生成,并揭示其背后的分子机制。
    结果:严重肢体缺血患者和后肢缺血(HLI)小鼠以及低氧人脐静脉内皮细胞(HUVECs)的腓肠肌血管内皮中IGFBP5的表达升高。在体内,内皮IGFBP5(IGFBP5EKO)的缺失促进了HLI小鼠血管功能的恢复和肢体坏死。此外,IGFBP5EKO小鼠的皮肤损伤愈合和主动脉环发芽比对照小鼠更快。体外,IGFBP5在HUVECs中的遗传抑制显着促进了管的形成,通过介导IGF1R的磷酸化,细胞增殖和迁移,Erk1/2和Akt。有趣的是,用重组人IGFBP5对HUVEC的药物治疗通过抑制IGF1或IGF2功能而对血管生成产生了对比作用。IGFBP5的遗传抑制通过IGF1R介导的糖酵解三磷酸腺苷(ATP)代谢促进细胞氧消耗和细胞外酸化速率。机械上,IGFBP5通过E3泛素连接酶VonHippel-Lindau(VHL)调节HIF1α稳定性发挥其作用。此外,内皮IGF1R的敲除部分消除了HLI后IGFBP5EKO小鼠的修复作用。
    结论:我们的研究结果表明,IGFBP5消融通过促进ATP代谢和稳定HIF1α来增强血管生成,提示IGFBP5是治疗异常血管生成相关病症的新型治疗靶标。
    BACKGROUND: Angiogenesis is critical for forming new blood vessels from antedating vascular vessels. The endothelium is essential for angiogenesis, vascular remodelling and minimisation of functional deficits following ischaemia. The insulin-like growth factor (IGF) family is crucial for angiogenesis. Insulin-like growth factor-binding protein 5 (IGFBP5), a binding protein of the IGF family, may have places in angiogenesis, but the mechanisms are not yet completely understood. We sought to probe whether IGFBP5 is involved in pathological angiogenesis and uncover the molecular mechanisms behind it.
    RESULTS: IGFBP5 expression was elevated in the vascular endothelium of gastrocnemius muscle from critical limb ischaemia patients and hindlimb ischaemic (HLI) mice and hypoxic human umbilical vein endothelial cells (HUVECs). In vivo, loss of endothelial IGFBP5 (IGFBP5EKO) facilitated the recovery of blood vessel function and limb necrosis in HLI mice. Moreover, skin damage healing and aortic ring sprouting were faster in IGFBP5EKO mice than in control mice. In vitro, the genetic inhibition of IGFBP5 in HUVECs significantly promoted tube formation, cell proliferation and migration by mediating the phosphorylation of IGF1R, Erk1/2 and Akt. Intriguingly, pharmacological treatment of HUVECs with recombinant human IGFBP5 ensued a contrasting effect on angiogenesis by inhibiting the IGF1 or IGF2 function. Genetic inhibition of IGFBP5 promoted cellular oxygen consumption and extracellular acidification rates via IGF1R-mediated glycolytic adenosine triphosphate (ATP) metabolism. Mechanistically, IGFBP5 exerted its role via E3 ubiquitin ligase Von Hippel-Lindau (VHL)-regulated HIF1α stability. Furthermore, the knockdown of the endothelial IGF1R partially abolished the reformative effect of IGFBP5EKO mice post-HLI.
    CONCLUSIONS: Our findings demonstrate that IGFBP5 ablation enhances angiogenesis by promoting ATP metabolism and stabilising HIF1α, implying IGFBP5 is a novel therapeutic target for treating abnormal angiogenesis-related conditions.
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  • 文章类型: Journal Article
    背景:帕金森病(PD)是世界范围内最常见的神经退行性疾病。研究表明,胰岛素样生长因子结合蛋白5(IGFBP5)可能有助于甲基苯丙胺诱导的PC-12细胞和大鼠纹状体的神经毒性和神经元凋亡。这里,我们研究了IGFBP5在PD的6-OHDA毒性模型中的表达和作用。
    方法:将PC-12和SH-SY5Y细胞暴露于50μM6-OHDA中24小时。西方印迹,CCK-8测定,EdU染色,膜联蛋白V染色,并进行免疫荧光以研究IGFBP5特异性siRNA的作用。IGFBP5对PD大鼠6-OHDA模型的影响通过行为测试得到证实,酪氨酸羟化酶(TH)免疫荧光染色,和西方印迹。
    结果:在GSE7621数据集中,与健康对照相比,IGFBP5在PD患者的黑质组织中高表达。在PC-12和SH-SY5Y单元格中,IGFBP5在6-OHDA暴露后以剂量依赖性方式上调。在6-OHDA刺激下,IGFBP5的沉默促进PC-12和SH-SY5Y的增殖,同时抑制细胞凋亡。IGFBP5的沉默缓解了6-OHDA诱导的TH阳性神经元丢失。Hedgehog信号通路被预测为IGFBP5的下游信号通路。在体外证实了IGFBP5和Sonichedgehog(SHH)信号通路之间的负调节。使用环巴胺部分逆转IGFBP5沉默对SH-SY5Y细胞的影响,SHH信号通路的直接抑制剂。此外,IGFBP5的沉默减轻了6-OHDA诱导的PD大鼠的运动缺陷和神经元损伤。
    结论:IGFBP5表达升高可能通过调节SHH信号通路参与6-OHDA诱导的神经毒性。
    BACKGROUND: Parkinson\'s disease (PD) is the most common neurodegenerative disease worldwide. Studies have shown that insulin-like growth factor-binding protein 5 (IGFBP5) may contribute to methamphetamine-induced neurotoxicity and neuronal apoptosis in PC-12 cells and rat striatum. Here, we studied the expression and role of IGFBP5 in the 6-OHDA-toxicant model of PD.
    METHODS: PC-12 and SH-SY5Y cells were exposed to 50 μm 6-OHDA for 24 h. qRT-PCR, western blotting, CCK-8 assay, EdU staining, annexin V staining, and immunofluorescence were performed to study the effects of IGFBP5-specific siRNAs. The effects of IGFBP5 on a rat 6-OHDA model of PD were confirmed by performing behavioral tests, tyrosine hydroxylase (TH) immunofluorescence staining, and western blotting.
    RESULTS: In the GSE7621 dataset, IGFBP5 was highly expressed in the substantia nigra tissues of PD patients compared to healthy controls. In PC-12 and SH-SY5Y cells, IGFBP5 was upregulated following 6-OHDA exposure in a dose-dependent manner. Silencing of IGFBP5 promoted PC-12 and SH-SY5Y proliferation and inhibited apoptosis under 6-OHDA stimulation. Silencing of IGFBP5 relieved 6-OHDA-induced TH-positive neuron loss. Hedgehog signaling pathway was predicted as a downstream signaling pathway of IGFBP5. Negative regulation between IGFBP5 and sonic hedgehog (SHH) signaling pathway was confirmed in vitro. The effects of IGFBP5 silencing on SH-SY5Y cells were partially reversed using cyclopamine, a direct inhibitor of the SHH signaling pathway. In addition, silencing of IGFBP5 attenuated motor deficits and neuronal damage in 6-OHDA-induced PD rats.
    CONCLUSIONS: Elevated IGFBP5 expression may be involved in 6-OHDA-induced neurotoxicity through regulation of the SHH signaling pathway.
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  • 文章类型: Journal Article
    胸腺是主要的免疫器官,负责产生自我耐受和功能性T细胞,但它在出生后随着年龄的增长迅速缩小。尽管研究已经研究了小鼠胸腺的发育和退化,人类胸腺中随着年龄增长而出现的关键调节因子仍不清楚。我们收集了来自36个样本的350,678个细胞的公共人类单细胞转录组测序(scRNA-seq)数据集,将它们整合为人类胸腺的细胞图谱。收集临床样品并进行实验以进行验证。我们发现早期胸腺细胞特异性信号和调节子在胸腺细胞迁移中起作用,扩散,凋亡和分化。然而,信令模式,包括数字,强度和路径在老化过程中完全改变,转录因子(FOXC1、MXI1、KLF9、NFIL3)及其靶基因,IGFBP5在胸腺衰老过程中表达和上调,并参与促进上皮-间质转化(EMT),对胸腺上皮细胞(TECs)的类固醇和脂肪生成过程的反应。此外,我们验证了IGFBP5蛋白在人和小鼠衰老胸腺的TECs和Hassall小体处增加,IGFBP5的敲除显着增加了胸腺细胞中增殖相关基因的表达。总的来说,我们通过生物信息学和实验验证,系统地探索了早期胸腺细胞的细胞间通讯和调控以及人类胸腺中与年龄相关的差异,表明IGFBP5是胸腺退化的功能标记,并为胸腺退化的机制提供了新的见解。
    Thymus is the main immune organ which is responsible for the production of self-tolerant and functional T cells, but it shrinks rapidly with age after birth. Although studies have researched thymus development and involution in mouse, the critical regulators that arise with age in human thymus remain unclear. We collected public human single-cell transcriptomic sequencing (scRNA-seq) datasets containing 350,678 cells from 36 samples, integrated them as a cell atlas of human thymus. Clinical samples were collected and experiments were performed for validation. We found early thymocyte-specific signaling and regulons which played roles in thymocyte migration, proliferation, apoptosis and differentiation. Nevertheless, signaling patterns including number, strength and path completely changed during aging, Transcription factors (FOXC1, MXI1, KLF9, NFIL3) and their target gene, IGFBP5, were resolved and up-regulated in aging thymus and involved in promoting epithelial-mesenchymal transition (EMT), responding to steroid and adipogenesis process of thymic epithelial cell (TECs). Furthermore, we validated that IGFBP5 protein increased at TECs and Hassall\'s corpuscle in both human and mouse aging thymus and knockdown of IGFBP5 significantly increased the expression of proliferation-related genes in thymocytes. Collectively, we systematically explored cell-cell communications and regulons of early thymocytes as well as age-related differences in human thymus by using both bioinformatic and experimental verification, indicating IGFBP5 as a functional marker of thymic involution and providing new insights into the mechanisms of thymus involution.
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  • 文章类型: Journal Article
    pappalysins妊娠相关血浆蛋白-A(PAPP-A)和-A2(PAPP-A2)充当胰岛素样生长因子-1(IGF-1)结合蛋白的蛋白酶,而stiniocalcin-2(STC2)被鉴定为pappalysin抑制剂。虽然有一些来自儿童和青少年研究的证据,目前尚不清楚这些分子是否与成人IGF-1及其结合蛋白的浓度有关.我们对循环PAPP-A的相关性进行了横断面调查,PAPP-A2和STC2与IGF-1及其结合蛋白(IGFBPs)在德国国家队列柏林北研究中心的394名成人预测试参与者(20-69岁)中。血浆PAPP-A,通过ELISA测量PAPP-A2,总和游离IGF-1,IGFBP-1,IGFBP-2,IGFBP-3,IGFBP-5和STC2。PAPP-A协会,PAPP-A2和STC2与IGF-1或IGFBP进行了调查,使用多元线性回归分析调整年龄,性别,体重指数和预测测试阶段。我们观察到PAPP-A2(每0.5ng/mL较高PAPP-A2水平的浓度差异)与总IGF-1(-4.3ng/mL;95%CI-7.0;-1.6)的显着负相关,IGF-1:IGFBP-3摩尔比(-0.34%;95%-CI-0.59;-0.09),但不游离IGF-1,与IGFBP-2呈正相关(11.9ng/mL;95%CI5.0;18.8)。PAPP-A与总的或游离的IGF-1无关,与IGFBP-5呈正相关。STC2与总IGF-1,IGFBP-2和IGFBP-3呈负相关,与IGFBP-1呈正相关。在一般成年人群中对这些关联的首次调查支持以下假设:PAPP-A2以及STC2对IGF-1及其结合蛋白起作用。尤其是总IGF-1。PAPP-A2和STC2在成人健康和疾病中的作用值得进一步研究。
    The pappalysins pregnancy associated plasma protein-A (PAPP-A) and -A2 (PAPP-A2) act as proteinases of insulin-like growth factor-1 (IGF-1) binding proteins, while stanniocalcin-2 (STC2) was identified as a pappalysin inhibitor. While there is some evidence from studies in children and adolescents, it is unclear whether these molecules are related to concentrations of IGF-1 and its binding proteins in adults. We investigated cross-sectionally the association of circulating PAPP-A, PAPP-A2 and STC2 with IGF-1 and its binding proteins (IGFBPs) in 394 adult pretest participants (20-69 years) of the German National Cohort Berlin North study center. Plasma PAPP-A, PAPP-A2, total and free IGF-1, IGFBP-1, IGFBP-2, IGFBP-3, IGFBP-5 and STC2 were measured by ELISAs. The associations of PAPP-A, PAPP-A2 and STC2 with IGF-1 or IGFBPs were investigated using multivariable linear regression analyses adjusting for age, sex, body mass index and pretest phase. We observed significant inverse associations of PAPP-A2 (difference in concentrations per 0.5 ng/mL higher PAPP-A2 levels) with total IGF-1 (- 4.3 ng/mL; 95% CI - 7.0; - 1.6), the IGF-1:IGFBP-3 molar ratio (- 0.34%; 95%-CI - 0.59; - 0.09), but not free IGF-1 and a positive association with IGFBP-2 (11.9 ng/mL; 95% CI 5.0; 18.8). PAPP-A was not related to total or free IGF-1, but positively associated with IGFBP-5. STC2 was inversely related to total IGF-1, IGFBP-2 and IGFBP-3 and positively to IGFBP-1. This first investigation of these associations in a general adult population supports the hypothesis that PAPP-A2 as well as STC2 play a role for IGF-1 and its binding proteins, especially for total IGF-1. The role of PAPP-A2 and STC2 for health and disease in adults warrants further investigation.
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  • 文章类型: Journal Article
    胰岛素样生长因子2(IGF-2)最近已被证明可以减轻大鼠和小鼠模型中的抑郁样行为。然而,其作为外周生物标志物的潜在作用尚未在抑郁症中得到评估.要做到这一点,我们在抑郁组(n=51)和健康对照组(n=48)中测定了血浆IGF-2和IGF家族的其他成员,如结合蛋白(IGFBP-1,IGFBP-3,IGFBP-5和IGFBP-7).在其中一些患者(n=15)中,我们在使用抗抑郁药治疗一段时间(19±6天)后测量了这些蛋白质。汉密尔顿抑郁量表(HDRS)和自评量表(SAAS)用于测量抑郁严重程度和快感缺乏,分别。通过迷你精神状态检查(MMSE)测试和自由和提示选择性提醒测试(FCSRT)的记忆来评估一般认知状态。在抑郁组中,IGF-2和IGFBP-7的水平均显著升高;然而,只有IGF-2在按年龄和性别校正后仍然显著升高。另一方面,治疗后IGF-2、IGFBP-3和IGFBP-5水平明显下降,而仅IGFBP-7显著升高。因此,IGF家族的外周变化及其对抗抑郁药的反应可能代表抑郁症患者大脑水平的改变.
    The Insulin-like growth factor 2 (IGF-2) has been recently proven to alleviate depressive-like behaviors in both rats and mice models. However, its potential role as a peripheral biomarker has not been evaluated in depression. To do this, we measured plasma IGF-2 and other members of the IGF family such as Binding Proteins (IGFBP-1, IGFBP-3, IGFBP-5 and IGFBP-7) in a depressed group of patients (n = 51) and in a healthy control group (n = 48). In some of these patients (n = 15), we measured these proteins after a period (19 ± 6 days) of treatment with antidepressants. The Hamilton Depressive Rating Scale (HDRS) and the Self-Assessment Anhedonia Scale (SAAS) were used to measure depression severity and anhedonia, respectively. The general cognition state was assessed by the Mini-Mental State Examination (MMSE) test and memory with the Free and Cued Selective Reminding Test (FCSRT). The levels of both IGF-2 and IGFBP-7 were found to be significantly increased in the depressed group; however, only IGF-2 remained significantly elevated after correction by age and sex. On the other hand, the levels of IGF-2, IGFBP-3 and IGFBP-5 were significantly decreased after treatment, whereas only IGFBP-7 was significantly increased. Therefore, peripheral changes in the IGF family and their response to antidepressants might represent alterations at the brain level in depression.
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  • 文章类型: Journal Article
    去神经支配引起的肌肉萎缩是骨骼肌疾病的常见原因。然而,最重要的肌肉生长因子的作用,胰岛素样生长因子(IGF-1),在这个过程中,人们知之甚少。IGF-1活性由6种IGF-1结合蛋白(IGFBP)控制。在骨骼肌中,IGFBP-5似乎在萎缩过程中起重要作用。此外,pappalysins(PAPP-A)通过IGFBP裂解增加IGF-1生物利用度调节肌肉生长。我们旨在研究坐骨神经支配后腓肠肌中IGF1-IGFBP5-PAPP系统及其调节剂的时间依赖性变化。从神经支配后第3天开始观察到腓肠肌萎缩和IGF-1的过度表达。从去神经支配后第1天开始,测量的蛋白水解因子升高。IGFBP-5和pappalysin的表达在第1天和第3天增加。随后,在第7至14天,pappalysins恢复到对照水平,而IGFBP-5保持升高。IGFBP-5/PAPP-A的比值与主要的蛋白水解标记相关。所有数据表明,pappalysins的初始增加可以促进IGF-1对肌肉生长的作用,而它们随后的减少可能导致进一步的肌肉萎缩。
    Denervation-induced muscle atrophy is a frequent cause of skeletal muscle diseases. However, the role of the most important muscle growth factor, insulin-like growth factor (IGF-1), in this process is poorly understood. IGF-1 activity is controlled by six IGF-1 binding proteins (IGFBPs). In skeletal muscle, IGFBP-5 seems to have an important role in atrophic processes. Furthermore, pappalysins (PAPP-A) modulate muscle growth by increasing IGF-1 bioavailability through IGFBP cleavage. We aimed to study the time-dependent changes in the IGF1-IGFBP5-PAPP system and its regulators in gastrocnemius muscle after sciatic denervation. Gastrocnemius atrophy and overexpression of IGF-1 was observed from day 3 post-denervation. The proteolytic factors measured were elevated from day 1 post-denervation onwards. Expression of both IGFBP-5 and pappalysins were increased on days 1 and 3. Subsequently, on days 7 to 14 pappalysins returned to control levels while IGFBP-5 remained elevated. The ratio IGFBP-5/PAPP-A was correlated with the main proteolytic markers. All data suggest that the initial increase of pappalysins could facilitate the IGF-1 action on muscle growth, whereas their subsequent decrease could lead to further muscle wasting.
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  • 文章类型: Journal Article
    胰岛素样生长因子受体(IGF1R)通路在肿瘤进展中发挥重要作用。在乳腺癌中,IGF1R途径与雌激素依赖性信号有关。IGF1R活性的调节是复杂的,涉及其配体IGF1和IGF2以及IGF结合蛋白(IGFBP)的作用。已知六个IGFBP具有与IGFs形成复合物的能力,通过它们控制这些配体的生物利用度。此外,每个IGFBP都有特定的特征。在这次审查中,重点在于IGFBP5在乳腺癌中的生物学效应和调控。在乳腺癌中,雌激素是IGFBP5转录的关键调节因子。它通过作为染色体乳腺癌易感性区域2q35的一部分的基因间增强子环发挥其作用。IGFBP5的生物学效应取决于细胞环境。通过抑制或促进IGF1R信号传导,IGFBP5可以作为肿瘤抑制因子或启动子。此外,IGFBP5具有不依赖IGF的活性,这导致了IGFBP5干扰癌细胞行为的复杂性。
    The insulin-like growth factor receptor (IGF1R) pathway plays an important role in cancer progression. In breast cancer, the IGF1R pathway is linked to estrogen-dependent signaling. Regulation of IGF1R activity is complex and involves the actions of its ligands IGF1 and IGF2 and those of IGF-binding proteins (IGFBPs). Six IGFBPs are known that share the ability to form complexes with the IGFs, by which they control the bioavailability of these ligands. Besides, each of the IGFBPs have specific features. In this review, the focus lies on the biological effects and regulation of IGFBP5 in breast cancer. In breast cancer, estrogen is a critical regulator of IGFBP5 transcription. It exerts its effect through an intergenic enhancer loop that is part of the chromosomal breast cancer susceptibility region 2q35. The biological effects of IGFBP5 depend upon the cellular context. By inhibiting or promoting IGF1R signaling, IGFBP5 can either act as a tumor suppressor or promoter. Additionally, IGFBP5 possesses IGF-independent activities, which contribute to the complexity by which IGFBP5 interferes with cancer cell behavior.
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  • 文章类型: Journal Article
    诸如胰岛素样生长因子(IGF)信号调节异常等危险因素与阿尔茨海默病有关。在这里,我们显示胰岛素样生长因子结合蛋白5(Igfbp5),胰岛素样生长因子1(Igf-1)的抑制性结合蛋白在阿尔茨海默病患者的海马锥体神经元和淀粉样斑块中积累。我们研究了这一发现与在大脑锥体神经元中过表达Igfbp5的转基因小鼠的致病性相关性。神经元过表达Igfbp5可防止训练引起的海马和皮质Bdnf表达增加,并降低运动对记忆保留的影响,但不是学习习得。因此,升高的IGFBP5表达可能是阿尔茨海默病过程中发生的一些早期认知缺陷的原因。
    Risk factors such as dysregulation of Insulin-like growth factor (IGF) signaling have been linked to Alzheimer\'s disease. Here we show that Insulin-like Growth Factor Binding Protein 5 (Igfbp5), an inhibitory binding protein for insulin-like growth factor 1 (Igf-1) accumulates in hippocampal pyramidal neurons and in amyloid plaques in brains of Alzheimer patients. We investigated the pathogenic relevance of this finding with transgenic mice overexpressing Igfbp5 in pyramidal neurons of the brain. Neuronal overexpression of Igfbp5 prevents the training-induced increase of hippocampal and cortical Bdnf expression and reduces the effects of exercise on memory retention, but not on learning acquisition. Hence, elevated IGFBP5 expression could be responsible for some of the early cognitive deficits that occur during the course of Alzheimer\'s disease.
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  • 文章类型: Journal Article
    遗传和功能方法的组合已经在2q35确定了三个独立的乳腺癌风险基因座。最近的精细比例图分析,以完善这些关联,导致1(信号1),5(信号2),和42个(信号3)可信的因果变异在这些基因座。我们使用公开可用的硅DNA酶I和ChIP-seq数据以及体外报告基因和CRISPR测定来注释信号2和3。我们鉴定了在两个信号处增强来自IGFBP5启动子的细胞类型特异性转录的推定调控元件(在信号2处推定调控元件的表达增加30至40倍,在信号3处推定调控元件的表达增加2至3倍)。我们进一步确定了信号2的五个可信因果变异之一,1.4kb缺失(esv3594306),作为可能的因果变异;该变异的缺失等位基因与IGFBP5表达平均额外增加1.3倍(MCF-7)和2.2倍(T-47D)相关。我们提出了一个模型,其中esv3594306的缺失等位基因并置两个转录因子结合区(由雌激素受体αChIP-seq峰注释)以生成单个扩展的调节元件。这种调节元件增加肿瘤抑制基因IGFBP5的细胞类型特异性表达,因此,降低雌激素受体阳性乳腺癌的风险(比值比=0.77,95%CI0.74-0.81,p=3.1×10-31).
    A combination of genetic and functional approaches has identified three independent breast cancer risk loci at 2q35. A recent fine-scale mapping analysis to refine these associations resulted in 1 (signal 1), 5 (signal 2), and 42 (signal 3) credible causal variants at these loci. We used publicly available in silico DNase I and ChIP-seq data with in vitro reporter gene and CRISPR assays to annotate signals 2 and 3. We identified putative regulatory elements that enhanced cell-type-specific transcription from the IGFBP5 promoter at both signals (30- to 40-fold increased expression by the putative regulatory element at signal 2, 2- to 3-fold by the putative regulatory element at signal 3). We further identified one of the five credible causal variants at signal 2, a 1.4 kb deletion (esv3594306), as the likely causal variant; the deletion allele of this variant was associated with an average additional increase in IGFBP5 expression of 1.3-fold (MCF-7) and 2.2-fold (T-47D). We propose a model in which the deletion allele of esv3594306 juxtaposes two transcription factor binding regions (annotated by estrogen receptor alpha ChIP-seq peaks) to generate a single extended regulatory element. This regulatory element increases cell-type-specific expression of the tumor suppressor gene IGFBP5 and, thereby, reduces risk of estrogen receptor-positive breast cancer (odds ratio = 0.77, 95% CI 0.74-0.81, p = 3.1 × 10-31).
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