Immunoglobulin lambda-Chains

免疫球蛋白 λ 链
  • 文章类型: Journal Article
    近年来,在慢性淋巴细胞白血病(CLL)中检测微小/可测量的残留病(MRD)的重要性由于高效治疗药物的可用性而增加.流式细胞术提供了显着的成本效益和即时性,预期灵敏度水平约为10-4。通过流式细胞术检测MRD的关键方面在于准确定义含有肿瘤细胞的区域。然而,CLL的一个子集,称为具有非典型免疫表型的CLL,表现出独特的细胞表面标记表达模式,可以使MRD检测具有挑战性,因为这些标记通常与正常B细胞相似。为了提高MRD在此类非典型CLL病例中检测的灵敏度,我们利用了细胞表面免疫球蛋白(sIg)轻链在该亚型中倾向于以更高的水平表达的观察结果。对于每四个细胞表面标记的二维图,我们使用曲线图评估sIgκ/λ轻链的表达,并确定了sIg轻链的κ/λ比值偏离假定CLL细胞区域内指定阈值的区域.使用此方法,我们可以检测到10-4水平的非典型CLL细胞。我们提出这种方法作为一种有效的MRD检测方法。
    In recent years, the significance of detecting minimal/measurable residual disease (MRD) in chronic lymphocytic leukemia (CLL) has increased due to the availability of highly effective therapeutic agents. Flow cytometry provides notable cost-effectiveness and immediacy, with an expected sensitivity level of approximately 10-4. The critical aspect of MRD detection via flow cytometry lies in accurately defining the region containing tumor cells. However, a subset of CLL, known as CLL with atypical immunophenotype, exhibits a distinct cell surface marker expression pattern that can make MRD detection challenging, because these markers often resemble those of normal B cells. To enhance the sensitivity of MRD detection in such atypical cases of CLL, we have capitalized on the observation that cell surface immunoglobulin (sIg) light chains tend to be expressed at a higher level in this subtype. For every four two-dimensional plots of cell surface markers, we used a plot to evaluate the expression of sIg kappa/lambda light chains and identified regions where the kappa/lambda ratio of sIg light chains deviated from a designated threshold within the putative CLL cell region. Using this method, we could detect atypical CLL cells at a level of 10-4. We propose this method as an effective MRD assay.
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  • 文章类型: Journal Article
    尽管基因和功能研究取得了进展,常见变异型免疫缺陷(CVID)的及时诊断仍是一项重大挑战.这项探索性研究旨在评估一组新型的CVID生物标志物的诊断性能,结合κ+λ轻链的总和,可溶性B细胞成熟抗原(sBCMA)水平,转换记忆B细胞(smB)和视觉评分。利用逻辑回归进行比较分析,以建立黄金标准测试,特别是抗体反应。我们的研究涵盖了88个主题,包括27个CVID,23选择性IgA缺乏症(SIGAD),20例继发性免疫缺陷(SID)患者和18例健康对照。我们建立了sBCMA的诊断准确性和κ+λ的总和,实现89%和89%的灵敏度(Se)和特异性(Spe),90%和99%,分别。重要的是,sBCMA与所有评估的生物标志物显示出强相关性(总和κ+λ,smB细胞和视觉),而κ+λ的总和是唯一独立于smB细胞或VISUAL的,提示其额外的诊断价值。通过多变量树决策模型,特异性抗体反应和κ+λ的总和是独立的,CVID的特征生物标志物,该模型显示曲线下面积(AUC)为0.946,Se0.85和Spe0.95。这种树决策模型有望提高CVID的诊断效率,强调和κ+λ作为面板内优越的CVID分类器和潜在的诊断标准。
    Despite advancements in genetic and functional studies, the timely diagnosis of common variable immunodeficiency (CVID) remains a significant challenge. This exploratory study was designed to assess the diagnostic performance of a novel panel of biomarkers for CVID, incorporating the sum of κ+λ light chains, soluble B-cell maturation antigen (sBCMA) levels, switched memory B cells (smB) and the VISUAL score. Comparative analyses utilizing logistic regression were performed against established gold-standard tests, specifically antibody responses. Our research encompassed 88 subjects, comprising 27 CVID, 23 selective IgA deficiency (SIgAD), 20 secondary immunodeficiency (SID) patients and 18 healthy controls. We established the diagnostic accuracy of sBCMA and the sum κ+λ, achieving sensitivity (Se) and specificity (Spe) of 89% and 89%, and 90% and 99%, respectively. Importantly, sBCMA showed strong correlations with all evaluated biomarkers (sum κ+λ, smB cell and VISUAL), whereas the sum κ+λ was uniquely independent from smB cells or VISUAL, suggesting its additional diagnostic value. Through a multivariate tree decision model, specific antibody responses and the sum κ+λ emerged as independent, signature biomarkers for CVID, with the model showcasing an area under the curve (AUC) of 0.946, Se 0.85, and Spe 0.95. This tree-decision model promises to enhance diagnostic efficiency for CVID, underscoring the sum κ+λ as a superior CVID classifier and potential diagnostic criterion within the panel.
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  • 文章类型: Case Reports
    背景:多发性骨髓瘤(MM)是一种恶性疾病,其特征是单克隆分化的浆细胞。虽然它更常见于老年人,它也会影响年轻人群,虽然发病率较低。
    方法:这里,我们介绍了一名32岁女性被诊断患有IgAλMM的病例。她表现出疲劳,恶心,急性肾损伤(AKI)与肌酐快速增加,和贫血。进行了肾活检以排除快速进展的肾小球疾病,从而获得了诊断。遗传检查显示t(14;16)易位和TP53的额外拷贝。患者接受了积极的静脉类固醇和静脉液体复苏,导致肾功能的改善。达雷妥单抗联合硼替佐米治疗,沙利度胺,开始使用地塞米松,并且耐受性良好。尽管IgAMM的预后普遍较差,我们的病例强调了对不明原因肾损伤的年轻患者考虑MM的重要性.
    结论:早期识别和及时干预对于治疗MM患者至关重要,尤其是那些有高风险的细胞遗传学异常。此病例提醒临床医生保持对MM的高度怀疑,即使在年轻人群中,当出现无法解释的肾损伤时。
    BACKGROUND: Multiple myeloma (MM) is a malignant disorder characterized by monoclonal differentiated plasma cells. While it is more commonly diagnosed in elderly individuals, it can also affect younger populations, though with a lower incidence.
    METHODS: Here, we present the case of a 32-year-old woman diagnosed with IgA lambda MM. She presented with fatigue, nausea, acute kidney injury (AKI) with a rapid increase in creatinine, and anemia. A kidney biopsy was done to rule out a rapidly progressive glomerular disease and a diagnosis was thus reached. A genetic workup revealed t(14;16) translocation and an extra copy of TP53. The patient received aggressive intravenous steroids and intravenous fluid resuscitation, resulting in an improvement in renal function. Treatment with daratumumab in combination with bortezomib, thalidomide, and dexamethasone was initiated and well tolerated. Despite the generally poor prognosis of IgA MM, our case emphasizes the importance of considering MM in young patients with unexplained kidney injury.
    CONCLUSIONS: Early recognition and prompt intervention are essential in managing MM patients, especially in those with high-risk cytogenetic abnormalities. This case serves as a reminder for clinicians to maintain a high index of suspicion for MM, even in younger populations, when presented with unexplained kidney injury.
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  • 文章类型: Case Reports
    所有症状性多发性骨髓瘤(MM)中不到2%具有免疫球蛋白D(IgD)作为单克隆蛋白。双态丙种球蛋白病要罕见得多。在诊断的时候,疾病往往处于晚期,包括肾衰竭,贫血,高钙血症和溶解性骨病变。由于骨髓瘤本身的稀有性,而且由于抗IgD抗血清不用于常规实践,文献中只有少数IgDMM的报道。该病例报告描述了患有IgDλMM的贫血和肾衰竭的患者。贫血,肾功能衰竭,我们的IgDlambdaMM患者的骨活检中>80%的浆细胞符合国际骨髓瘤工作组的MM诊断标准。患者的临床过程与其他IgDMM患者相似。血清蛋白免疫固定(s-IFE)的最终结果显示IgDλ和游离λ单克隆条带。为了防止误诊,有必要使用抗IgD和抗IgE抗血清,IgM,IgG,κ和λ抗血清显示κ或λ单克隆带,重链中没有单克隆带。
    Less than 2% of all symptomatic multiple myeloma (MM) has immunoglobulin D (IgD) as monoclonal protein. Biclonal gammopathy is much rarer. At the time of diagnosis, disease is often in advanced stage, including renal failure, anemia, hypercalcemia and lytic bone lesions. Due to the rarity of myeloma itself, but also due to the fact that anti-IgD antisera is not used in routine practice, there are only a few reports of IgD MM described in the literature. This case report describes a patient with IgD lambda MM with anemia and renal failure. Anemia, renal failure, and > 80 percent plasma cells in bone biopsy in our patient with IgD lambda MM meets International Myeloma Working Group criteria for diagnosis of MM. The patient clinical course was similar to other patients with IgD MM. The final result of serum protein immunofixation (s-IFE) showed IgD lambda and free lambda monoclonal bands. To prevent misdiagnosis, it is necessary to use anti-IgD and anti-IgE antisera whenever the serum protein immunofixation with IgA, IgM, IgG, kappa and lambda antiserums shows a kappa or lambda monoclonal band without monoclonal band in heavy chain.
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  • 文章类型: Case Reports
    一个60多岁的男人,已知患有多发性硬化症,出现左臂和腿的癫痫和轻瘫。脑成像显示白质病变,右顶骨,在过去的6年里,这是渐进的,并不典型的多发性硬化症。脑活检显示B细胞浸润,IgAλ单型浆细胞分化和淀粉样蛋白沉积,类型为λ免疫球蛋白轻链(AL)。骨髓活检和PET/CT排除了全身性淋巴瘤。延长历史记录,血液和尿液检测(包括心脏生物标志物)未发现系统性淀粉样变性引起的器官功能障碍的证据.原发性脑AL淀粉样瘤是一种非常罕见的实体,难以评估最佳治疗方法。该患者接受了局部应用体积调强电弧放射治疗,24Gy,分成12个分数。之后,左臂的轻瘫部分解决,左腿的功能得到改善。癫痫发作不再发生。
    A man in his 60s, known with multiple sclerosis, presented with seizures and paresis of the left arm and leg. Brain imaging showed a white matter lesion, right parietal, which was progressive over the last 6 years and not typical for multiple sclerosis. Brain biopsy showed a B-cell infiltrate with IgA lambda monotypic plasma cell differentiation and amyloid deposits, typed as lambda immunoglobulin light chain (AL). Bone marrow biopsy and PET/CT ruled out a systemic lymphoma. Extended history taking, blood and urine testing (including cardiac biomarkers) identified no evidence of systemic amyloidosis-induced organ dysfunction.Primary cerebral AL amyloidoma is a very rare entity where optimal treatment is difficult to assess. The patient was treated with locally applied volumetric modulated arc radiotherapy, 24 Gy, divided in 12 fractions. Afterwards, the paresis of the left arm partially resolved, and the function of the left leg improved. Seizures did not occur anymore.
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  • 文章类型: Journal Article
    背景:据报道,免疫球蛋白λ(Igλ)在许多正常和肿瘤组织和细胞中表达。然而,肿瘤来源的Igλ的功能和临床意义尚不清楚。
    方法:用癌症基因组图谱(TCGA)检测了免疫球蛋白Lambda常数(IGLC)在宫颈鳞状细胞癌和宫颈腺癌(CESC)中的差异表达。基因型-组织表达(GTEx),和人类蛋白质图谱(HPA)数据库。通过基于TCGA数据库的生物信息学分析探索IGLC对患者临床表型和预后的影响。我们使用基于TCGA和GTEx数据库的生物信息学分析来阐明IGLC表达之间的相关性,免疫调节剂表达,肿瘤干性,肿瘤浸润免疫细胞的浸润评分。免疫共沉淀(Co-IP)和银染结合液相色谱-串联质谱(LC-MS/MS)来获得潜在的肿瘤来源的Igλ相互作用蛋白。通过LC-MS/MS鉴定的候选蛋白的功能注释在数据库中进行注释,可视化和集成发现(DAVID)。基于TCGA对CESC和正常宫颈组织中的7种IGLC进行了生物信息学分析,GTEx,和基因表达谱交互式分析2(GEPIA2)数据库。在用于检索相互作用基因/蛋白质(STRING)数据库的搜索工具中,基于肿瘤来源的Igλ相互作用蛋白分析蛋白质-蛋白质相互作用(PPI)网络。免疫组织化学(IHC)用于验证IGLC在CESC中的表达。
    结果:我们发现大多数IGLCs(IGLC1、IGLC2、IGLC3、IGLC4、IGLC5、IGLC6和IGLC7)在CESC组织中表达上调,与正常宫颈组织相比。IGLC5和IGLC7在不同病理转移(M)中的表达差异有统计学意义,肿瘤之一,节点,和转移(TNM)分期系统,CESC的类别。除无病间隔(DFI)外,4IGLC(IGLC1、IGLC2、IGLC3和IGLC7)表达水平与患者总生存期(OS)呈正相关,疾病特异性生存率(DSS),CESC组织中的无进展间隔(PFI)。5IGLC(IGLC1,IGLC2,IGLC3,IGLC6和IGLC7)的表达分别与CESC组织中大多数免疫调节剂的表达呈正相关。CESC组织中4种IGLC1、IGLC2、IGLC3、IGLC7的表达与肿瘤干性呈负相关。除IGLC4,IGLC5和IGLC7外,4个IGLC(IGLC1,IGLC2,IGLC3和IGLC6)的表达与6个肿瘤浸润性免疫细胞(B细胞,T细胞CD4,T细胞CD8,中性粒细胞,巨噬细胞,和DC)。在分析了上述肿瘤来源的Igλ的生物信息学数据后,Co-IP和LC-MS/MS用于确认4种蛋白质(RPL7,RPS3,H1-5和H1-6)可能与宫颈癌细胞中的肿瘤来源的Igλ相互作用。这些候选蛋白质的功能分析显示它们与许多蛋白质相互作用并且参与各种细胞生物学过程。最后,IHC用于进一步证实上述生物信息学结果,结果表明,宫颈腺癌和宫颈鳞癌中的Igλ表达水平高于正常宫颈组织。
    结论:本研究基于生物信息学分析,全面研究了肿瘤源性Igλ及其相互作用蛋白的功能,以及Igλ作为CESC预后和治疗标志物的潜在价值。为CESC治疗提供新的方向和证据。
    BACKGROUND: Immunoglobulin lambda (Igλ) has been reported to be expressed in many normal and tumor tissues and cells. However, the function and clinical significance of tumor-derived Igλ remain unclear.
    METHODS: The differential expressions of Immunoglobulin Lambda Constants (IGLCs) in cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) were examined with The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), and Human Protein Atlas (HPA) databases. The effects of IGLCs on patient clinical phenotypes and prognosis were explored via bioinformatics analyses based on the TCGA databases. We used the bioinformatics analyses based on the TCGA and GTEx databases to elucidate the correlations among IGLC expressions, immunomodulator expressions, tumor stemness, and infiltration scores of tumor infiltrating immune cells. Co-immunoprecipitation (Co-IP) and silver staining combined with liquid chromatography-tandem mass spectrometry (LC-MS/MS) were used to obtain potential tumor-derived Igλ-interacting proteins. Functional annotation of candidate proteins identified by LC-MS/MS was performed in Database for Annotation, Visualization and Integrated Discovery (DAVID). The bioinformatics analyses of 7 IGLCs in CESC and normal cervical tissues were performed based on TCGA, GTEx, and Gene Expression Profiling Interactive Analysis 2 (GEPIA2) databases. Protein-protein interaction (PPI) network was analyzed based on tumor-derived Igλ-interacting proteins in Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database. Immunohistochemistry (IHC) was used to validate the expressions of IGLCs in CESC.
    RESULTS: We found that the expressions of the majority of IGLCs (IGLC1, IGLC2, IGLC3, IGLC4, IGLC5, IGLC6, and IGLC7) were upregulated in CESC tissues, compared with those in normal cervical tissues. The expressions of IGLC5 and IGLC7 had significant difference in different pathologic metastasis (M), one of tumor, node, and metastasis (TNM) staging system, categories of CESC. Except for disease-free interval (DFI), 4 IGLC (IGLC1, IGLC2, IGLC3, and IGLC7) expression levels were positively associated with patient overall survival (OS), disease-specific survival (DSS), and progression-free interval (PFI) respectively in CESC tissues. 5 IGLC (IGLC1, IGLC2, IGLC3, IGLC6, and IGLC7) expressions were positively correlated with the expressions of a majority of immunomodulators respectively in CESC tissues. Tumor stemness was negatively correlated with the expressions of 4 IGLCs (IGLC1, IGLC2, IGLC3, and IGLC7) respectively in CESC tissues. Except for IGLC4, IGLC5, and IGLC7, 4 IGLC (IGLC1, IGLC2, IGLC3, and IGLC6) expressions were positively correlated with infiltration scores of 6 tumor-infiltrating immune cells (B cell, T cell CD4, T cell CD8, neutrophil, macrophage, and DC). After analyses of the above bioinformatics data of tumor-derived Igλ, Co-IP and LC-MS/MS were used to confirm that 4 proteins (RPL7, RPS3, H1-5, and H1-6) might interact with tumor-derived Igλ in cervical cancer cells. Functional analyses of these candidate proteins showed that they interacted with many proteins and were involved in various cellular biological processes. Finally, IHC was used to further confirm the above bioinformatics results, it was indicated that the expression level of Igλ in cervical adenocarcinoma and cervical squamous cell carcinoma was higher than that in normal cervical tissue.
    CONCLUSIONS: This study comprehensively investigated the functions of tumor-derived Igλ and its interacting proteins based on bioinformatics analysis and the potential value of Igλ as a prognostic and therapeutic marker for CESC, providing new direction and evidence for CESC therapy.
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  • 文章类型: Journal Article
    转录增强子是V(D)J重组的重要激活子,通过互补,协调非编码转录,未重排的基因片段。转录如何在空间不同的启动子处协调增加,然而,仍然知之甚少。以鼠免疫球蛋白λ(Igλ)基因座为模型,我们发现在3'Igλ域中有三个增强子样元件,Eλ3-1,HSCλ1和HSE-1显示出惊人相似的转录因子结合动力学和紧密的空间接近性,表明它们形成了一个活跃的增强剂中心。时间分析表明,互补的V和J基因片段的协调募集到这个中心,具有与增强子相当的转录因子结合动力学。我们进一步发现E2A,P300,Mediator和Integrator作为早期事件与增强子绑定,而YY1募集和eRNA合成发生较晚,对应于转录激活。值得注意的是,有义和反义增强子RNA之间的相互作用是活性增强子hub形成和协调Igλ转录的中心:反义Eλ3-1eRNA抑制Igλ激活,而时间分析表明,有义eRNA的积累水平促进YY1募集以稳定增强子hub/启动子相互作用并导致协调转录激活。因此,这些研究首次证明了有义与反义eRNA的阈值水平在基因座激活中的关键作用。
    Transcription enhancers are essential activators of V(D)J recombination that orchestrate non-coding transcription through complementary, unrearranged gene segments. How transcription is coordinately increased at spatially distinct promoters, however, remains poorly understood. Using the murine immunoglobulin lambda (Igλ) locus as model, we find that three enhancer-like elements in the 3\' Igλ domain, Eλ3-1, HSCλ1 and HSE-1, show strikingly similar transcription factor binding dynamics and close spatial proximity, suggesting that they form an active enhancer hub. Temporal analyses show coordinate recruitment of complementary V and J gene segments to this hub, with comparable transcription factor binding dynamics to that at enhancers. We find further that E2A, p300, Mediator and Integrator bind to enhancers as early events, whereas YY1 recruitment and eRNA synthesis occur later, corresponding to transcription activation. Remarkably, the interplay between sense and antisense enhancer RNA is central to both active enhancer hub formation and coordinate Igλ transcription: Antisense Eλ3-1 eRNA represses Igλ activation whereas temporal analyses demonstrate that accumulating levels of sense eRNA boost YY1 recruitment to stabilise enhancer hub/promoter interactions and lead to coordinate transcription activation. These studies therefore demonstrate for the first time a critical role for threshold levels of sense versus antisense eRNA in locus activation.
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  • 文章类型: Journal Article
    近年来精神分裂症患者体内水解髓鞘碱性蛋白(MBP)的抗体得到了积极的研究,但是免疫球蛋白分子的催化特性的机制仍然未知。确定与MBP蛋白水解高活性相关的特定免疫球蛋白序列将有助于理解抗体酶催化的机制。在对急性精神分裂症患者和健康人血清中的IgG肽进行比较质谱分析的过程中,确定了12个序列,仅在水解MBP的抗体中发现。这些序列属于IgG重链和κ-和λ-型轻链,其中八个属于可变域。来自轻链可变区的肽的含量与精神分裂症患者IgG对MBP的蛋白水解活性无关,而对于来自重链可变区的两个序列(FQ(+0.98)GWVTMTR和*LYLQMN(+0.98)SLR),活性随着浓度的增加而增加。结果表明,这些序列可能以一种或另一种方式参与MBP水解。
    The antibodies of schizophrenic patients that hydrolyze myelin basic protein (MBP) have been actively studied recently, but the mechanism of the catalytic properties of immunoglobulin molecules remains unknown. Determination of specific immunoglobulin sequences associated with the high activity of MBP proteolysis will help to understand the mechanisms of abzyme catalysis. In the course of comparative mass spectrometric analysis of IgG peptides from the blood serum of patients with acute schizophrenia and healthy people, 12 sequences were identified, which were found only in antibodies that hydrolyze MBP. These sequences belong to IgG heavy chains and κ- and λ-type light chains, with eight of them belonging to variable domains. The content of peptides from the variable regions of the light chains does not correlate with the proteolytic activity of IgG to MBP in patients with schizophrenia, whereas for two sequences from the variable regions of the heavy chains (FQ(+0.98)GWVTMTR and *LYLQMN(+0.98)SLR), an increase in activity with increasing their concentration. The results suggest that these sequences may be involved in one way or another in MBP hydrolysis.
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  • 文章类型: Journal Article
    诊断和预后标志物对于帮助患者诊断和预测未来临床事件或疾病进展是必要的。作为某些疾病的有希望的生物标志物,考虑了游离轻链(FLC)κ和λ。FLC的测量目前用于常规诊断,例如,多发性骨髓瘤,FLC作为单克隆丙种球蛋白的生物标志物的有用性是众所周知的。因此,本综述重点关注FLC作为其他已观察到炎症背景的疾病的新的潜在生物标志物的研究.我们对MEDLINE索引研究进行了文献计量学综述,以评估FLC的临床意义。在与炎症密切相关的疾病如病毒感染中观察到FLC水平的改变,蜱传疾病或风湿性疾病,以及与免疫系统反应适度相关的疾病,例如,多发性硬化症,糖尿病,心血管疾病和癌症。FLC浓度的增加似乎是多发性硬化症或蜱传脑炎患者的有用预后指标。FLC的密集合成还可以反映针对病原体如SARS-CoV-2的特异性抗体的产生。此外,FLC浓度异常可能预测2型糖尿病患者糖尿病肾病的发生。显著升高的水平还与心血管疾病患者的住院和死亡风险增加有关。此外,已发现FLC在风湿性疾病中增加,并且与疾病活动有关。此外,有研究表明,在乳腺癌或结肠炎相关的结肠癌发生过程中,抑制FLC会减少肿瘤发生的进展.总之,κ和λFLC的异常水平,以及κ:λ的比率,通常是免疫球蛋白合成紊乱的结果,这是过度活跃的炎症反应的影响。因此,似乎κ和λFLC可能是某些疾病的重要诊断和预后生物标志物。此外,FLC的抑制似乎是治疗各种疾病的有希望的治疗靶标,其中炎症在疾病的发展或进展中起重要作用。
    Diagnostic and prognostic markers are necessary to help in patient diagnosis and the prediction of future clinical events or disease progression. As promising biomarkers of selected diseases, the free light chains (FLCs) κ and λ were considered. Measurements of FLCs are currently used in routine diagnostics of, for example, multiple myeloma, and the usefulness of FLCs as biomarkers of monoclonal gammopathies is well understood. Therefore, this review focuses on the studies concerning FLCs as new potential biomarkers of other disorders in which an inflammatory background has been observed. We performed a bibliometric review of studies indexed in MEDLINE to assess the clinical significance of FLCs. Altered levels of FLCs were observed both in diseases strongly connected with inflammation such as viral infections, tick-borne diseases or rheumatic disorders, and disorders that are moderately associated with immune system reactions, e.g., multiple sclerosis, diabetes, cardiovascular disorders and cancers. Increased concentrations of FLCs appear to be a useful prognostic marker in patients with multiple sclerosis or tick-borne encephalitis. Intensive synthesis of FLCs may also reflect the production of specific antibodies against pathogens such as SARS-CoV-2. Moreover, abnormal FLC concentrations might predict the development of diabetic kidney disease in patients with type 2 diabetes. Markedly elevated levels are also associated with increased risk of hospitalization and death in patients with cardiovascular disorders. Additionally, FLCs have been found to be increased in rheumatic diseases and have been related to disease activity. Furthermore, it has been suggested that inhibition of FLCs would reduce the progression of tumorigenesis in breast cancer or colitis-associated colon carcinogenesis. In conclusion, abnormal levels of κ and λ FLCs, as well as the ratio of κ:λ, are usually the result of disturbances in the synthesis of immunoglobulins as an effect of overactive inflammatory reactions. Therefore, it seems that κ and λ FLCs may be significant diagnostic and prognostic biomarkers of selected diseases. Moreover, the inhibition of FLCs appears to be a promising therapeutical target for the treatment of various disorders where inflammation plays an important role in the development or progression of the disease.
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  • 文章类型: Journal Article
    免疫球蛋白(IGs),适应性免疫系统的关键组成部分,由三个基因组基因座编码。然而,IG基因座的复杂性严重限制了短读取测序的有效使用,限制了我们对这些基因座种群多样性的了解。我们利用了现有的长读全基因组测序(WGS)数据,Fosmid技术,和IG靶向的单分子,实时(SMRT)长读测序(IG-Cap),以创建来自6个种族不同个体的IGLambda(IGL)基因座的单倍型解析组装。此外,我们利用IG-Cap从不同队列的个体中产生了10个IGL二倍体组装体.从这16个人中,我们确定了显著的等位基因多样性,包括36个新的IGLV等位基因。此外,我们观察到IGLV基因中的单核苷酸变异(SNV)相对于IGL基因间和基因组背景SNV密度高度升高。通过比较我们的高质量组件和来自同一个体的现有短读数据集之间的SNV调用,我们在短阅读数据集中显示出很高的假阳性倾向。最后,第一次,我们通过核苷酸解析了含有功能性IGLJ和IGLC基因的IGLC区域中常见的5-10Kb重复。这些数据一起代表了我们对IGL基因座中遗传变异和种群多样性的理解的显着进步。
    Immunoglobulins (IGs), crucial components of the adaptive immune system, are encoded by three genomic loci. However, the complexity of the IG loci severely limits the effective use of short read sequencing, limiting our knowledge of population diversity in these loci. We leveraged existing long read whole-genome sequencing (WGS) data, fosmid technology, and IG targeted single-molecule, real-time (SMRT) long-read sequencing (IG-Cap) to create haplotype-resolved assemblies of the IG Lambda (IGL) locus from 6 ethnically diverse individuals. In addition, we generated 10 diploid assemblies of IGL from a diverse cohort of individuals utilizing IG-Cap. From these 16 individuals, we identified significant allelic diversity, including 36 novel IGLV alleles. In addition, we observed highly elevated single nucleotide variation (SNV) in IGLV genes relative to IGL intergenic and genomic background SNV density. By comparing SNV calls between our high quality assemblies and existing short read datasets from the same individuals, we show a high propensity for false-positives in the short read datasets. Finally, for the first time, we nucleotide-resolved common 5-10 Kb duplications in the IGLC region that contain functional IGLJ and IGLC genes. Together these data represent a significant advancement in our understanding of genetic variation and population diversity in the IGL locus.
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