Genetics/Genomics

遗传学 / 基因组学
  • 文章类型: Journal Article
    许多患有饮食失调的人及其家庭成员对可能影响这些疾病的治疗和结果的科学进步了如指掌。他们适当地应用这些知识来评估可用的治疗方法,并倡导最佳的循证护理。他们提出了许多临床医生通常准备不足的难题。遗传学提高了我们对饮食失调的理解,并提供了一种新颖的镜头来理解这些有害疾病。临床医生现在可以更新他们对饮食失调病因的理解,放弃过时的病因学理论,其中一些对患者及其家人造成了伤害。没有成为精神病学遗传学专家,精神科医生和其他精神卫生保健专业人员可以对科学进行总体概述,了解它能提供什么和不能提供什么,将遗传因素纳入他们的案例概念化,并增强他们与患者和家属讨论这些话题的信心。
    Many individuals with eating disorders and their family members are well-informed about advances in science that could affect the treatment and outcome of these illnesses. They appropriately apply this knowledge to evaluate available treatments and advocate for the best possible evidence-based care. They ask hard questions that many clinicians are often ill-prepared to answer. Genetics has advanced our understanding of eating disorders and provides a novel lens through which to understand these pernicious illnesses. Clinicians can now update their understanding of the etiology of eating disorders and abandon outdated etiological theories, some of which have done harm to patients and their families. Without becoming expert in psychiatric genetics, psychiatrists and other mental health care professionals can develop a general overview of the science, understand what it can and cannot offer, incorporate genetic factors into their case conceptualizations, and boost their confidence in discussing these topics with patients and families.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    精神分裂症是一种起源于神经发育过程中的脑部疾病,具有复杂的遗传和环境病因。尽管有数十年的临床证据表明患者纹状体功能改变,研究其在人类中的细胞和分子机制的研究是有限的。探讨精神分裂症相关纹状体的神经发育改变,作者建立了诱导多能干细胞(iPSCs)分化为腹侧前脑类器官(VFOs)的方法。
    VFOs是从四个精神分裂症患者和四个神经典型对照个体的死后硬脑膜成纤维细胞来源的iPSCs中产生的,这些个体的死后尾状基因型和转录组数据在BrainSeq神经基因组学联盟中进行了分析。选择个体,使两组具有不重叠的精神分裂症多基因风险评分(PRS)。
    VFO的单细胞RNA测序分析揭示了精神分裂症和对照个体之间的发育轨迹差异,其中患者的抑制性神经元细胞表现出加速成熟。此外,与对照个体相比,精神分裂症VFOs中抑制性神经元中的上调基因与精神分裂症个体死后尾状组织中的上调基因显着重叠,包括iPSC队列的捐赠者。
    研究结果表明,来自高PRS精神分裂症患者的纹状体神经元携带起源于早期大脑发育的异常,并且VFO模型可以概括疾病相关细胞类型特异性神经发育表型在培养皿中。
    UNASSIGNED: Schizophrenia is a brain disorder that originates during neurodevelopment and has complex genetic and environmental etiologies. Despite decades of clinical evidence of altered striatal function in affected patients, studies examining its cellular and molecular mechanisms in humans are limited. To explore neurodevelopmental alterations in the striatum associated with schizophrenia, the authors established a method for the differentiation of induced pluripotent stem cells (iPSCs) into ventral forebrain organoids (VFOs).
    UNASSIGNED: VFOs were generated from postmortem dural fibroblast-derived iPSCs of four individuals with schizophrenia and four neurotypical control individuals for whom postmortem caudate genotypes and transcriptomic data were profiled in the BrainSeq neurogenomics consortium. Individuals were selected such that the two groups had nonoverlapping schizophrenia polygenic risk scores (PRSs).
    UNASSIGNED: Single-cell RNA sequencing analyses of VFOs revealed differences in developmental trajectory between schizophrenia and control individuals in which inhibitory neuronal cells from the patients exhibited accelerated maturation. Furthermore, upregulated genes in inhibitory neurons in schizophrenia VFOs showed a significant overlap with upregulated genes in postmortem caudate tissue of individuals with schizophrenia compared with control individuals, including the donors of the iPSC cohort.
    UNASSIGNED: The findings suggest that striatal neurons derived from high-PRS individuals with schizophrenia carry abnormalities that originated during early brain development and that the VFO model can recapitulate disease-relevant cell type-specific neurodevelopmental phenotypes in a dish.
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  • 文章类型: Journal Article
    产后抑郁症(PPD)是重度抑郁症(MDD)的常见亚型,更具遗传性,然而在精神病学遗传学研究不足。作者进行了全基因组关联研究(GWAS)的荟萃分析,以研究PPD的遗传结构。
    对18个欧洲血统队列(17,339例PPD病例和53,426例对照)进行了Meta分析。一组东亚血统(975例病例和3,780例对照),和一个非洲血统队列(456例病例和1,255例对照),总计18,770例PPD病例和58,461例对照。GWAS后分析包括1)基于单核苷酸多态性(SNP)的遗传力([公式:见正文]),2)PPD与其他表型之间的遗传相关性,和3)在来自小鼠中枢和周围神经系统的27种人类组织和265种细胞类型中富集PPDGWAS发现。
    在欧洲或跨祖先荟萃分析中,没有SNP获得全基因组意义。PPD的[公式:见正文]为0.14(SE=0.02)。估计PPD与MDD的显着遗传相关性,双相情感障碍,焦虑症,创伤后应激障碍,失眠,初潮年龄,多囊卵巢综合征.细胞类型富集分析暗示丘脑中的抑制性神经元和下丘脑间隔核内的胆碱能神经元,与MDD不同的模式。
    虽然需要更多的样本才能达到全基因组的显著性水平,结果证实PPD是一种多基因和可遗传的表型.还有证据表明,尽管与MDD有很高的相关性,PPD可能具有独特的遗传成分。细胞富集结果表明GABA能神经元,与美国食品和药物管理局批准的用于PPD的唯一药物(brexanolone)融合在一个共同的机制上。
    Postpartum depression (PPD) is a common subtype of major depressive disorder (MDD) that is more heritable, yet is understudied in psychiatric genetics. The authors conducted meta-analyses of genome-wide association studies (GWASs) to investigate the genetic architecture of PPD.
    Meta-analyses were conducted on 18 cohorts of European ancestry (17,339 PPD cases and 53,426 controls), one cohort of East Asian ancestry (975 cases and 3,780 controls), and one cohort of African ancestry (456 cases and 1,255 controls), totaling 18,770 PPD cases and 58,461 controls. Post-GWAS analyses included 1) single-nucleotide polymorphism (SNP)-based heritability ([Formula: see text]), 2) genetic correlations between PPD and other phenotypes, and 3) enrichment of the PPD GWAS findings in 27 human tissues and 265 cell types from the mouse central and peripheral nervous system.
    No SNP achieved genome-wide significance in the European or the trans-ancestry meta-analyses. The [Formula: see text] of PPD was 0.14 (SE=0.02). Significant genetic correlations were estimated for PPD with MDD, bipolar disorder, anxiety disorders, posttraumatic stress disorder, insomnia, age at menarche, and polycystic ovary syndrome. Cell-type enrichment analyses implicate inhibitory neurons in the thalamus and cholinergic neurons within septal nuclei of the hypothalamus, a pattern that differs from MDD.
    While more samples are needed to reach genome-wide levels of significance, the results presented confirm PPD as a polygenic and heritable phenotype. There is also evidence that despite a high correlation with MDD, PPD may have unique genetic components. Cell enrichment results suggest GABAergic neurons, which converge on a common mechanism with the only medication approved by the U.S. Food and Drug Administration for PPD (brexanolone).
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    拷贝数变异(CNVs)是多种神经发育和精神疾病(NPDs)的众所周知的遗传多效性危险因素,包括自闭症(ASD)和精神分裂症。关于赋予相同疾病风险的不同CNV如何影响皮质下脑结构以及这些改变如何与CNV赋予的疾病风险水平相关,人们知之甚少。为了填补这个空白,作者调查了总体积,顶点级厚度,以及11个CNVs和6个NPDs中皮层下结构的表面图。
    在675个CNV携带者中使用协调的ENIGMA方案对皮质下结构进行了表征(CNVs在1q21.1,TAR,13q12.12、15q11.2、16p11.2、16p13.11和22q11.2;年龄范围,6-80岁;340名男性)和782名对照受试者(年龄范围,6-80岁;387名男性)以及ASD的ENIGMA汇总统计数据,精神分裂症,注意缺陷多动障碍,强迫症,双相情感障碍,和严重的抑郁症。
    所有CNV在至少一个皮质下测量中显示出改变。每个结构受到至少两个CNV的影响,海马体和杏仁核受影响。形状分析检测到次区域变化,这些变化在体积分析中进行了平均。确定了一个共同的潜在维度,以对海马体/杏仁核和壳核/苍白球的相反作用为特征,跨CNV和跨NPD。CNVs大小对皮质下体积的影响,厚度,和局部表面积与先前报道的对认知的影响大小以及ASD和精神分裂症的风险相关。
    研究结果表明,与CNV相关的皮质下改变与神经精神疾病相关的改变表现出不同程度的相似性。以及不同的效果,一些CNV聚集在成人发病条件下,另一些则聚集在ASD上。这些发现提供了对为什么不同基因组基因座处的CNV增加相同NPD的风险以及为什么单个CNV增加不同组NPD的风险的长期问题的洞察。
    Copy number variants (CNVs) are well-known genetic pleiotropic risk factors for multiple neurodevelopmental and psychiatric disorders (NPDs), including autism (ASD) and schizophrenia. Little is known about how different CNVs conferring risk for the same condition may affect subcortical brain structures and how these alterations relate to the level of disease risk conferred by CNVs. To fill this gap, the authors investigated gross volume, vertex-level thickness, and surface maps of subcortical structures in 11 CNVs and six NPDs.
    Subcortical structures were characterized using harmonized ENIGMA protocols in 675 CNV carriers (CNVs at 1q21.1, TAR, 13q12.12, 15q11.2, 16p11.2, 16p13.11, and 22q11.2; age range, 6-80 years; 340 males) and 782 control subjects (age range, 6-80 years; 387 males) as well as ENIGMA summary statistics for ASD, schizophrenia, attention deficit hyperactivity disorder, obsessive-compulsive disorder, bipolar disorder, and major depression.
    All CNVs showed alterations in at least one subcortical measure. Each structure was affected by at least two CNVs, and the hippocampus and amygdala were affected by five. Shape analyses detected subregional alterations that were averaged out in volume analyses. A common latent dimension was identified, characterized by opposing effects on the hippocampus/amygdala and putamen/pallidum, across CNVs and across NPDs. Effect sizes of CNVs on subcortical volume, thickness, and local surface area were correlated with their previously reported effect sizes on cognition and risk for ASD and schizophrenia.
    The findings demonstrate that subcortical alterations associated with CNVs show varying levels of similarities with those associated with neuropsychiatric conditions, as well distinct effects, with some CNVs clustering with adult-onset conditions and others with ASD. These findings provide insight into the long-standing questions of why CNVs at different genomic loci increase the risk for the same NPD and why a single CNV increases the risk for a diverse set of NPDs.
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  • 文章类型: Journal Article
    最近对酒精相关表型的全基因组关联研究(GWAS)发现了酒精消费和酒精使用障碍(AUD)的潜在遗传结构的关键差异。这两个特征与精神疾病具有相反的遗传相关性。了解从大量饮酒到AUD过渡的遗传因素具有重要的理论和临床意义。
    作者使用来自跨血统百万退伍军人计划样本的纵向数据来识别1)与AUD和酒精消费相关的新基因座(通过酒精使用障碍识别测试[AUDIT-C]的消费子量表上的分数来衡量),2)表型变异对遗传发现的影响,和3)对AUD具有直接影响的遗传变异,其不是通过饮酒介导的。
    作者确定了26个与AUD相关的基因座和22个与AUDIT-C评分相关的基因座,包括祖先特异性和新颖的基因座。在排除报告禁欲的个人的二级GWAS中,作者确定了AUD的另外7个基因座和AUDIT-C评分的另外8个基因座.尽管禁欲组的异质性使GWAS的研究结果存在偏差,排除戒酒组后,饮酒和疾病之间仍存在独特的差异.最后,使用调解分析,作者确定了一组对AUD有影响的变异,这些变异不是通过饮酒介导的.
    饮酒和AUD之间的遗传结构差异与其具有不同的生物学贡献相一致。对AUD具有直接影响的遗传变异可能与理解从大量饮酒到AUD的转变有关,并且可能是转化预防和治疗工作的目标。
    Recent genome-wide association studies (GWASs) of alcohol-related phenotypes have uncovered key differences in the underlying genetic architectures of alcohol consumption and alcohol use disorder (AUD), with the two traits having opposite genetic correlations with psychiatric disorders. Understanding the genetic factors that underlie the transition from heavy drinking to AUD has important theoretical and clinical implications.
    The authors used longitudinal data from the cross-ancestry Million Veteran Program sample to identify 1) novel loci associated with AUD and alcohol consumption (measured by the score on the consumption subscale of the Alcohol Use Disorders Identification Test [AUDIT-C]), 2) the impact of phenotypic variation on genetic discovery, and 3) genetic variants with direct effects on AUD that are not mediated through alcohol consumption.
    The authors identified 26 loci associated with AUD and 22 loci associated with AUDIT-C score, including ancestry-specific and novel loci. In secondary GWASs that excluded individuals who report abstinence, the authors identified seven additional loci for AUD and eight additional loci for AUDIT-C score. Although the heterogeneity of the abstinent group biases the GWAS findings, unique variance between alcohol consumption and disorder remained after the abstinent group was excluded. Finally, using mediation analysis, the authors identified a set of variants with effects on AUD that are not mediated through alcohol consumption.
    Differences in genetic architecture between alcohol consumption and AUD are consistent with their having different biological contributions. Genetic variants with direct effects on AUD are potentially relevant to understanding the transition from heavy alcohol consumption to AUD and may be targets for translational prevention and treatment efforts.
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  • 文章类型: Journal Article
    存量结构对于开发资源的可持续管理至关重要。在这种情况下,遗传标记已经使用了二十多年来解决海洋开发资源的空间结构,并充分理解种群动态和相互作用。虽然在遗传学早期,诸如同工酶和RFLP之类的遗传标记占据了争论的主导地位,技术进步每十年为科学家提供新的工具,以更好地评估股票歧视和相互作用(即基因流动)。这里,我们提供了对了解冰岛水域大西洋鳕鱼种群结构的遗传研究的综述,从早期的同工酶方法到目前进行的基因组工作。我们进一步强调了产生染色体锚定基因组组装以及全基因组种群数据的重要性。这极大地改变了我们对可能考虑的管理单位的看法。在对冰岛水域的大西洋鳕鱼结构进行了近60年的遗传调查后,遗传(以及后来的基因组)数据与使用数据存储标签的行为监测相结合,将注意力从地理种群结构转移到行为生态型。这篇综述还表明,需要进一步研究这些生态型(以及它们之间的基因流)对冰岛水域大西洋鳕鱼种群结构的影响。它还强调了全基因组数据对于解开与染色体倒位和相关超基因相关的意外物种内多样性的重要性。这对于北大西洋物种的可持续管理计划的未来发展至关重要。
    Stock structure is of paramount importance for sustainable management of exploited resources. In that context, genetic markers have been used for more than two decades to resolve spatial structure of marine exploited resources and to fully fathom stock dynamics and interactions. While genetic markers such as allozymes and RFLP dominated the debate in the early era of genetics, technology advances have provided scientists with new tools every decade to better assess stock discrimination and interactions (i.e. gene flow). Here, we provide a review of genetic studies performed to understand stock structure of Atlantic cod in Icelandic waters, from the early allozyme approaches to the genomic work currently carried out. We further highlight the importance of the generation of a chromosome-anchored genome assembly together with whole-genome population data, which drastically changed our perception of the possible management units to consider. After nearly 60 years of genetic investigation of Atlantic cod structure in Icelandic waters, genetic (and later genomic) data combined with behavioural monitoring using Data Storage Tags shifted the attention from geographical population structures to behavioural ecotypes. This review also demonstrates the need for future research to further disentangle the impact of these ecotypes (and gene flow among them) on the population structure of Atlantic cod in Icelandic waters. It also highlights the importance of whole-genome data to unravel unexpected within-species diversity related to chromosomal inversions and associated supergenes, which are important to consider for future development of sustainable management programmes of the species within the North Atlantic.
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  • 文章类型: Journal Article
    未经证实:尽管在确定与重度抑郁症相关的基因组变异方面取得了实质性进展,基因组和环境因素共同影响抑郁风险的机制尚不清楚.基因组赋予的对社会环境的敏感性可能是将基因组变异和抑郁症状联系起来的一种机制。作者评估了在经历了巨大生活压力的两个样本中,社会支持是否会在基因组风险范围内不同程度地影响抑郁症发展的可能性:实习生健康研究(IHS)的1,011名第一年培训医师(实习生)和435名最近丧偶的健康和退休研究(HRS)参与者。
    UNASSIGNED:参与者的抑郁症状和社会支持是通过在生活压力源之前和之后进行的问卷调查来评估的。计算了两个样本的重度抑郁症的多基因风险评分(PRS)。
    UNASSIGNED:在IHS样本中,实习开始后,抑郁症状评分增加了126%,在HRS样本中,减少了34%。在IHS样本(发生率比率[IRR]=0.96,95%CI=0.93,0.98)和HRS样本(IRR=0.78,95%CI=0.66,0.92)中,抑郁症PRS与社会支持变化之间存在相互作用,较高的抑郁PRS与对社会支持变化的更大敏感性相关。约翰逊-尼曼间隔表明了交叉效应,社会支持的损失和增加可以减轻PRS对抑郁症状的影响。(IHS样本中的约翰逊-奈曼区间,-0.02,0.71;在HRS样本中,-0.49,1.92)。
    UNASSIGNED:研究结果表明,在不利的社会条件下,具有高基因组风险发展抑郁症状的个体也从培育社会环境中受益更多。
    Despite substantial progress in identifying genomic variation associated with major depression, the mechanisms by which genomic and environmental factors jointly influence depression risk remain unclear. Genomically conferred sensitivity to the social environment may be one mechanism linking genomic variation and depressive symptoms. The authors assessed whether social support affects the likelihood of depression development differently across the spectrum of genomic risk in two samples that experienced substantial life stress: 1,011 first-year training physicians (interns) in the Intern Health Study (IHS) and 435 recently widowed Health and Retirement Study (HRS) participants.
    Participants\' depressive symptoms and social support were assessed with questionnaires that were administered before and after the life stressor. Polygenic risk scores (PRSs) for major depressive disorder were calculated for both samples.
    Depressive symptom scores increased by 126% after the start of internship in the IHS sample and by 34% after widowing in the HRS sample. There was an interaction between depression PRS and change in social support in the prediction of depressive symptoms in both the IHS sample (incidence rate ratio [IRR]=0.96, 95% CI=0.93, 0.98) and the HRS sample (IRR=0.78, 95% CI=0.66, 0.92), with higher depression PRS associated with greater sensitivity to changes in social support. Johnson-Neyman intervals indicated a crossover effect, with losses and gains in social support moderating the effect of PRS on depressive symptoms. (Johnson-Neyman interval in the IHS sample, -0.02, 0.71; in the HRS sample, -0.49, 1.92).
    The study findings suggest that individuals with high genomic risk for developing increased depressive symptoms under adverse social conditions also benefit more from nurturing social environments.
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  • 文章类型: Meta-Analysis
    未经授权:儿童虐待与心理健康问题有关,但这种关系在多大程度上是因果关系尚不清楚.为了加强因果推理,作者对准实验研究进行了系统评价和荟萃分析,研究了儿童虐待与心理健康问题之间的关系。
    未经评估:搜索PubMed,PsycINFO,Embase进行了同行评审,从数据库开始到2022年1月1日的英语文章。如果他们使用准实验方法检查了儿童虐待与心理健康问题之间的关联(例如,双胞胎/兄弟姐妹差异设计,双胞胎设计的孩子,采用设计,固定效果设计,随机截距交叉滞后面板模型,自然实验,倾向得分匹配,或逆概率加权)。
    未经授权:确定了34项准实验研究,由54,646名独立参与者组成。在对混杂进行准实验调整之前,儿童虐待与心理健康问题中度相关(Cohen\sd=0.56,95%CI=0.41,0.71).经过准实验调整后,儿童虐待和心理健康问题之间的小关联仍然存在(Cohen'sd=0.31,95%CI=0.24,0.37).儿童虐待与心理健康之间的这种调整后的关联在不同的准实验方法中是一致的,并在不同的精神疾病中广泛传播。
    UNASSIGNED:这些发现与一个小的,儿童虐待对心理健康问题的因果贡献。此外,研究结果表明,遭受虐待的个体出现心理健康问题的总体风险的一部分是由于更广泛的遗传和环境风险因素。因此,预防儿童虐待和解决遭受虐待的个体中更广泛的精神风险因素可能有助于预防精神病理学。
    Childhood maltreatment is associated with mental health problems, but the extent to which this relationship is causal remains unclear. To strengthen causal inference, the authors conducted a systematic review and meta-analysis of quasi-experimental studies examining the relationship between childhood maltreatment and mental health problems.
    A search of PubMed, PsycINFO, and Embase was conducted for peer-reviewed, English-language articles from database inception until January 1, 2022. Studies were included if they examined the association between childhood maltreatment and mental health problems using a quasi-experimental method (e.g., twin/sibling differences design, children of twins design, adoption design, fixed-effects design, random-intercept cross-lagged panel model, natural experiment, propensity score matching, or inverse probability weighting).
    Thirty-four quasi-experimental studies were identified, comprising 54,646 independent participants. Before quasi-experimental adjustment for confounding, childhood maltreatment was moderately associated with mental health problems (Cohen\'s d=0.56, 95% CI=0.41, 0.71). After quasi-experimental adjustment, a small association between childhood maltreatment and mental health problems remained (Cohen\'s d=0.31, 95% CI=0.24, 0.37). This adjusted association between childhood maltreatment and mental health was consistent across different quasi-experimental methods, and generalized across different psychiatric disorders.
    These findings are consistent with a small, causal contribution of childhood maltreatment to mental health problems. Furthermore, the findings suggest that part of the overall risk of mental health problems in individuals exposed to maltreatment is due to wider genetic and environmental risk factors. Therefore, preventing childhood maltreatment and addressing wider psychiatric risk factors in individuals exposed to maltreatment could help to prevent psychopathology.
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