Trypanosomiasis, a significant health concern in South America, South Asia, and Southeast Asia, requires active surveys to effectively control the disease. To address this, we have developed a hybrid model that combines deep metric learning (DML) and image retrieval. This model is proficient at identifying Trypanosoma species in microscopic images of thin-blood film examinations. Utilizing the ResNet50 backbone neural network, a trained-model has demonstrated outstanding performance, achieving an accuracy exceeding 99.71 % and up to 96 % in recall. Acknowledging the necessity for automated tools in field scenarios, we demonstrated the potential of our model as an autonomous screening approach. This was achieved by using prevailing convolutional neural network (CNN) applications, and vector database based-images returned by the KNN algorithm. This achievement is primarily attributed to the implementation of the Triplet Margin Loss function as 98 % of precision. The robustness of the model demonstrated in five-fold cross-validation highlights the ResNet50 neural network, based on DML, as a state-of-the-art CNN model as AUC >98 %. The adoption of DML significantly improves the performance of the model, remaining unaffected by variations in the dataset and rendering it a useful tool for fieldwork studies. DML offers several advantages over conventional classification model to manage large-scale datasets with a high volume of classes, enhancing scalability. The model has the capacity to generalize to novel classes that were not encountered during training, proving particularly advantageous in scenarios where new classes may consistently emerge. It is also well suited for applications requiring precise recognition, especially in discriminating between closely related classes. Furthermore, the DML exhibits greater resilience to issues related to class imbalance, as it concentrates on learning distances or similarities, which are more tolerant to such imbalances. These contributions significantly make the effectiveness and practicality of DML model, particularly in in fieldwork research.

During radiologic interpretation, radiologists read patient identifiers from the metadata of medical images to recognize the patient being examined. However, it is challenging for radiologists to identify \"incorrect\" metadata and patient identification errors. We propose a method that uses a patient re-identification technique to link correct metadata to an image set of computed tomography images of a trunk with lost or wrongly assigned metadata. This method is based on a feature vector matching technique that uses a deep feature extractor to adapt to the cross-vendor domain contained in the scout computed tomography image dataset. To identify \"incorrect\" metadata, we calculated the highest similarity score between a follow-up image and a stored baseline image linked to the correct metadata. The re-identification performance tests whether the image with the highest similarity score belongs to the same patient, i.e., whether the metadata attached to the image are correct. The similarity scores between the follow-up and baseline images for the same \"correct\" patients were generally greater than those for \"incorrect\" patients. The proposed feature extractor was sufficiently robust to extract individual distinguishable features without additional training, even for unknown scout computed tomography images. Furthermore, the proposed augmentation technique further improved the re-identification performance of the subset for different vendors by incorporating changes in width magnification due to changes in patient table height during each examination. We believe that metadata checking using the proposed method would help detect the metadata with an \"incorrect\" patient identifier assigned due to unavoidable errors such as human error.

The emergence of unknown diseases is often with few or no samples available. Zero-shot learning and few-shot learning have promising applications in medical image analysis. In this paper, we propose a Cross-Modal Deep Metric Learning Generalized Zero-Shot Learning (CM-DML-GZSL) model. The proposed network consists of a visual feature extractor, a fixed semantic feature extractor, and a deep regression module. The network belongs to a two-stream network for multiple modalities. In a multi-label setting, each sample contains a small number of positive labels and a large number of negative labels on average. This positive-negative imbalance dominates the optimization procedure and may prevent the establishment of an effective correspondence between visual features and semantic vectors during training, resulting in a low degree of accuracy. A novel weighted focused Euclidean distance metric loss is introduced in this regard. This loss not only can dynamically increase the weight of hard samples and decrease the weight of simple samples, but it can also promote the connection between samples and semantic vectors corresponding to their positive labels, which helps mitigate bias in predicting unseen classes in the generalized zero-shot learning setting. The weighted focused Euclidean distance metric loss function can dynamically adjust sample weights, enabling zero-shot multi-label learning for chest X-ray diagnosis, as experimental results on large publicly available datasets demonstrate.

In face recognition systems, light direction, reflection, and emotional and physical changes on the face are some of the main factors that make recognition difficult. Researchers continue to work on deep learning-based algorithms to overcome these difficulties. It is essential to develop models that will work with high accuracy and reduce the computational cost, especially in real-time face recognition systems. Deep metric learning algorithms called representative learning are frequently preferred in this field. However, in addition to the extraction of outstanding representative features, the appropriate classification of these feature vectors is also an essential factor affecting the performance. The Scene Change Indicator (SCI) in this study is proposed to reduce or eliminate false recognition rates in sliding windows with a deep metric learning model. This model detects the blocks where the scene does not change and tries to identify the comparison threshold value used in the classifier stage with a new value more precisely. Increasing the sensitivity ratio across the unchanging scene blocks allows for fewer comparisons among the samples in the database. The model proposed in the experimental study reached 99.25% accuracy and 99.28% F-1 score values ​​compared to the original deep metric learning model. Experimental results show that even if there are differences in facial images of the same person in unchanging scenes, misrecognition can be minimized because the sample area being compared is narrowed.

Biological fingerprints extracted from clinical images can be used for patient identity verification to determine misfiled clinical images in picture archiving and communication systems. However, such methods have not been incorporated into clinical use, and their performance can degrade with variability in the clinical images. Deep learning can be used to improve the performance of these methods. A novel method is proposed to automatically identify individuals among examined patients using posteroanterior (PA) and anteroposterior (AP) chest X-ray images. The proposed method uses deep metric learning based on a deep convolutional neural network (DCNN) to overcome the extreme classification requirements for patient validation and identification. It was trained on the NIH chest X-ray dataset (ChestX-ray8) in three steps: preprocessing, DCNN feature extraction with an EfficientNetV2-S backbone, and classification with deep metric learning. The proposed method was evaluated using two public datasets and two clinical chest X-ray image datasets containing data from patients undergoing screening and hospital care. A 1280-dimensional feature extractor pretrained for 300 epochs performed the best with an area under the receiver operating characteristic curve of 0.9894, an equal error rate of 0.0269, and a top-1 accuracy of 0.839 on the PadChest dataset containing both PA and AP view positions. The findings of this study provide considerable insights into the development of automated patient identification to reduce the possibility of medical malpractice due to human errors.

Colorectal cancer is a leading cause of cancer-related deaths worldwide. The best method to prevent CRC is a colonoscopy. However, not all colon polyps have the risk of becoming cancerous. Therefore, polyps are classified using different classification systems. After the classification, further treatment and procedures are based on the classification of the polyp. Nevertheless, classification is not easy. Therefore, we suggest two novel automated classifications system assisting gastroenterologists in classifying polyps based on the NICE and Paris classification.
We build two classification systems. One is classifying polyps based on their shape (Paris). The other classifies polyps based on their texture and surface patterns (NICE). A two-step process for the Paris classification is introduced: First, detecting and cropping the polyp on the image, and secondly, classifying the polyp based on the cropped area with a transformer network. For the NICE classification, we design a few-shot learning algorithm based on the Deep Metric Learning approach. The algorithm creates an embedding space for polyps, which allows classification from a few examples to account for the data scarcity of NICE annotated images in our database.
For the Paris classification, we achieve an accuracy of 89.35 %, surpassing all papers in the literature and establishing a new state-of-the-art and baseline accuracy for other publications on a public data set. For the NICE classification, we achieve a competitive accuracy of 81.13 % and demonstrate thereby the viability of the few-shot learning paradigm in polyp classification in data-scarce environments. Additionally, we show different ablations of the algorithms. Finally, we further elaborate on the explainability of the system by showing heat maps of the neural network explaining neural activations.
Overall we introduce two polyp classification systems to assist gastroenterologists. We achieve state-of-the-art performance in the Paris classification and demonstrate the viability of the few-shot learning paradigm in the NICE classification, addressing the prevalent data scarcity issues faced in medical machine learning.

Single-cell RNA sequencing (scRNA-seq) has significantly accelerated the experimental characterization of distinct cell lineages and types in complex tissues and organisms. Cell-type annotation is of great importance in most of the scRNA-seq analysis pipelines. However, manual cell-type annotation heavily relies on the quality of scRNA-seq data and marker genes, and therefore can be laborious and time-consuming. Furthermore, the heterogeneity of scRNA-seq datasets poses another challenge for accurate cell-type annotation, such as the batch effect induced by different scRNA-seq protocols and samples. To overcome these limitations, here we propose a novel pipeline, termed TripletCell, for cross-species, cross-protocol and cross-sample cell-type annotation. We developed a cell embedding and dimension-reduction module for the feature extraction (FE) in TripletCell, namely TripletCell-FE, to leverage the deep metric learning-based algorithm for the relationships between the reference gene expression matrix and the query cells. Our experimental studies on 21 datasets (covering nine scRNA-seq protocols, two species and three tissues) demonstrate that TripletCell outperformed state-of-the-art approaches for cell-type annotation. More importantly, regardless of protocols or species, TripletCell can deliver outstanding and robust performance in annotating different types of cells. TripletCell is freely available at https://github.com/liuyan3056/TripletCell. We believe that TripletCell is a reliable computational tool for accurately annotating various cell types using scRNA-seq data and will be instrumental in assisting the generation of novel biological hypotheses in cell biology.

With the spread of COVID-19, the need for remote detection of physical conditions is increasing, for example, there are several situations wherein the body temperature has to be measured remotely to detect febrile individuals. Aiming to remotely detect physical conditions, the study attempted to investigate anomaly detection based on facial color and skin temperature, which are indicators related to hemodynamics. Triplet loss was used to extract features related to subjective health feelings from facial images to evaluate whether there is a relationship between subjective health feelings and facial images. A classification of subjective health feelings related to poor physical conditions based on these features was also attempted. To obtain the data, an experiment was conducted for approximately 1 year to measure facial visual and thermal images, and subjective feelings related to physical conditions. Anomaly levels were defined based on subjective health feelings. Anomaly detection models were constructed by classifying anomaly and normal data based on subjective health feelings. Facial visible and thermal images were applied to the trained model to quantitatively evaluate the accuracy of the classification of anomaly conditions related to subjective health. At higher levels of anomaly, a combination of facial visible and thermal images resulted in the classification of subjective health feelings with moderate accuracy. Further, the results suggest that the eyes and sides of the nose may indicate subjective health feelings.

Face recognition is a widely accepted biometric identifier, as the face contains a lot of information about the identity of a person. The goal of this study is to match the 3D face of an individual to a set of demographic properties (sex, age, BMI, and genomic background) that are extracted from unidentified genetic material. We introduce a triplet loss metric learner that compresses facial shape into a lower dimensional embedding while preserving information about the property of interest. The metric learner is trained for multiple facial segments to allow a global-to-local part-based analysis of the face. To learn directly from 3D mesh data, spiral convolutions are used along with a novel mesh-sampling scheme, which retains uniformly sampled points at different resolutions. The capacity of the model for establishing identity from facial shape against a list of probe demographics is evaluated by enrolling the embeddings for all properties into a support vector machine classifier or regressor and then combining them using a naive Bayes score fuser. Results obtained by a 10-fold cross-validation for biometric verification and identification show that part-based learning significantly improves the systems performance for both encoding with our geometric metric learner or with principal component analysis.

Rapid identification of plant diseases is essential for effective mitigation and control of their influence on plants. For plant disease automatic identification, classification of plant leaf images based on deep learning algorithms is currently the most accurate and popular method. Existing methods rely on the collection of large amounts of image annotation data and cannot flexibly adjust recognition categories, whereas we develop a new image retrieval system for automated detection, localization, and identification of individual leaf disease in an open setting, namely, where newly added disease types can be identified without retraining. In this paper, we first optimize the YOLOv5 algorithm, enhancing recognition ability in small objects, which helps to extract leaf objects more accurately; secondly, integrating classification recognition with metric learning, jointly learning categorizing images and similarity measurements, thus, capitalizing on prediction ability of available image classification models; and finally, constructing an efficient and nimble image retrieval system to quickly determine leaf disease type. We demonstrate detailed experimental results on three publicly available leaf disease datasets and prove the effectiveness of our system. This work lays the groundwork for promoting disease surveillance of plants applicable to intelligent agriculture and to crop research such as nutrition diagnosis, health status surveillance, and more.