ARE

ARE
  • 文章类型: Journal Article
    热休克蛋白β1(HSPB1)是小的HSP家族的成员,在骨关节炎(OA)软骨细胞中下调,并证明了作为RNA结合蛋白(RBP)的能力。本工作旨在探索HSPB1结合RNA的谱图,揭示HSPB1在OA中的潜在调控机制。在这项工作中,我们使用iRIP-seq在Hela细胞中捕获了无偏倚的HSPB1-RNA相互作用图谱。结果表明,HSPB1与大量的mRNAs相互作用,基因组位于CDS区。HSPB1相关峰的功能富集显示参与基因表达,翻译启动,细胞蛋白质代谢过程,和无意义介导的衰变。HOMER软件分析显示HSPB1结合峰在GAGGAG序列中过度表示。此外,ABLIRC和CIMS算法表明,HSPB1与富含AU的基序结合,3'UTR中富含AU的峰比例略高于其他区域。此外,HSPB1结合靶标分析显示几个基因与OA相关,包括EGFR,PLEC,COL5A1和ROR2。通过定量RIP-PCR实验在OA组织中进一步证实了OA相关mRNA与HSPB1的关联。进一步实验证明了OA组织中HSPB1的下调。总之,我们目前的研究证实HSPB1是一种RNA结合蛋白,并揭示了其在OA病理过程中的潜在功能,为进一步研究HSPB1在OA中的分子调控机制提供了可靠的见解。
    Heat-shock protein beta1 (HSPB1) is a member of the small HSP family, downregulated in osteoarthritis (OA) chondrocytes and demonstrated the capacity to serve as an RNA-binding protein (RBP). This work aimed to explore the profile of HSPB1 bound RNA and reveal the potential regulation mechanism of HSPB1 in OA. In this work, we captured an unbiased HSPB1-RNA interaction map in Hela cells using the iRIP-seq. The results demonstrated that HSPB1 interacted with plentiful of mRNAs and genomic location toward the CDS region. Functional enrichment of HSPB1-related peaks showed the involvement in gene expression, translation initiation, cellular protein metabolic process, and nonsense-mediated decay. HOMER software analysis showed that HSPB1 bound peaks were over-represented in GAGGAG sequences. In addition, ABLIRC and CIMS algorithm indicated that HSPB1 bound to AU-rich motifs and the proportion of AU-rich peaks in 3\' UTR were slightly higher than that in other regions. Moreover, HSPB1-binding targets analysis revealed several gens were associated with OA including EGFR, PLEC, COL5A1, and ROR2. The association of OA-related mRNAs to HSPB1 was additionally confirmed in OA tissues by the quantitative RIP-PCR experiments. Further experiment demonstrated the downregulation of HSPB1 in OA tissues. In conclusion, our current study confirmed HSPB1 as an RNA-binding protein and revealed its potential function in the pathological process of OA, providing a reliable insight to further investigate the molecular regulation mechanism of HSPB1 in OA.
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  • 文章类型: Journal Article
    沙得诺内酯是一种具有抗炎和抗肿瘤活性的生物活性化合物。尽管最近有人提出,sedanolide激活核因子E2相关因子2(NRF2)途径,关于其对细胞抵抗氧化应激的影响的研究很少。本研究的目的是研究sedanolide在抑制过氧化氢(H2O2)诱导的人肝母细胞瘤细胞系HepG2细胞氧化损伤中的功能及其潜在的分子机制。我们发现,sedanolide激活了NRF2核易位介导的抗氧化反应元件(ARE)依赖性转录。RNA测序数据的途径富集分析显示,sedanolide上调了参与NRF2途径和谷胱甘肽代谢的抗氧化酶的转录。然后,我们进一步研究了sedanolide是否对H2O2诱导的细胞死亡具有细胞保护作用.我们表明,sedanolide显着减弱了暴露于H2O2诱导的胞浆和线粒体活性氧(ROS)的产生。此外,我们证明,sedanolide预处理对H2O2诱导的细胞死亡具有显着的细胞保护作用,可能是由于阻止了线粒体膜电位的降低和caspase-3/7活性的增加。我们的研究表明,sedanolide通过激活Kelch样ECH相关蛋白1(KEAP1)-NRF2途径增强了细胞对氧化损伤的抵抗力。
    Sedanolide is a bioactive compound with anti-inflammatory and antitumor activities. Although it has been recently suggested that sedanolide activates the nuclear factor E2-related factor 2 (NRF2) pathway, there is little research on its effects on cellular resistance to oxidative stress. The objective of the present study was to investigate the function of sedanolide in suppressing hydrogen peroxide (H2O2)-induced oxidative damage and the underlying molecular mechanisms in human hepatoblastoma cell line HepG2 cells. We found that sedanolide activated the antioxidant response element (ARE)-dependent transcription mediated by the nuclear translocation of NRF2. Pathway enrichment analysis of RNA sequencing data revealed that sedanolide upregulated the transcription of antioxidant enzymes involved in the NRF2 pathway and glutathione metabolism. Then, we further investigated whether sedanolide exerts cytoprotective effects against H2O2-induced cell death. We showed that sedanolide significantly attenuated cytosolic and mitochondrial reactive oxygen species (ROS) generation induced by exposure to H2O2. Furthermore, we demonstrated that pretreatment with sedanolide conferred a significant cytoprotective effect against H2O2-induced cell death probably due to preventing the decrease in the mitochondrial membrane potential and the increase in caspase-3/7 activity. Our study demonstrated that sedanolide enhanced cellular resistance to oxidative damage via the activation of the Kelch-like ECH-associated protein 1 (KEAP1)-NRF2 pathway.
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  • 文章类型: Journal Article
    通过NAD(P)H:醌氧化还原酶(NQO1)对醌进行解毒是维持细胞稳态的关键机制。接触重金属,特别是甲基汞(MeHg),诱导几种抗氧化酶,包括NQO1。已知核因子红系2相关因子2(NRF2)调节Nqo1基因的表达,并且芳烃受体(AHR)是另一种Nqo1基因调节因子。这种共调促使我们研究哪种转录因子(NRF2或AHR)在暴露于甲基汞时协调NQO1表达的调节。因此,我们研究了MeHg如何通过将Hepa-1c1c7细胞暴露于有或没有添加NQO1诱导剂的几种浓度的MeHg来调节NQO1表达水平,DL-萝卜硫烷(SUL)和2,3,7,8-四氯二苯并-对二恶英(TCDD)。我们发现Nqo1的mRNA表达在时间和剂量依赖性方式上被MeHg上调。此外,在存在和不存在其诱导物的情况下,MeHg在所有表达水平上增加NQO1,SUL或TCDD。此外,MeHg介导的NQO1表达的增加与NRF2蛋白核定位的同时增加平行,但不是AHR的。机械上,抗氧化剂反应元件驱动的报告基因活性在甲基汞暴露后被诱导215%。此外,用Nrf2siRNA转染Hepa-1c1c7可将MeHg诱导的NQO1蛋白表达降低60%。总之,我们的发现提供了支持以下假设的证据:MeHg通过转录机制上调Nqo1基因,至少部分通过NRF2依赖性机制.
    The detoxification of quinones through NAD(P)H:quinone oxidoreductase (NQO1) is a crucial mechanism to maintain cellular homeostasis. The exposure to heavy metals, specifically methylmercury (MeHg), induces several antioxidant enzymes, including NQO1. The nuclear factor erythroid 2-related factor-2 (NRF2) is known to regulate the expression of Nqo1 gene and also the aryl hydrocarbon receptor (AHR) is another Nqo1 gene regulator. This co-regulation prompted us to investigate which transcription factor (NRF2 or AHR) orchestrates the regulation of NQO1 expression upon MeHg exposure. Therefore, we investigated how MeHg can modulate the level of NQO1 expression by exposing Hepa-1c1c7 cells to several concentrations of MeHg with and without the addition of NQO1 inducers, DL-sulforaphane (SUL) and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). We found that the mRNA expression of Nqo1 is up-regulated by MeHg in time- as well as dose-dependent fashions. Additionally, MeHg increased the NQO1 at all expression levels with and without the presence of its inducers, SUL or TCDD. Furthermore, the MeHg-mediated increase of NQO1 expression was in parallel with a concurrent increase in the nuclear localization of NRF2 protein, but not that of AHR. Mechanistically, the antioxidant response element-driven reporter gene activity was induced by 215% upon MeHg exposure. Also, transfecting Hepa-1c1c7 with Nrf2 siRNA reduced the MeHg-induced NQO1 protein expression by 60%. In conclusion, our findings provide evidence supporting the hypothesis that MeHg upregulates the Nqo1 gene through a transcriptional mechanism at least in part via a NRF2-dependent mechanism.
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  • 文章类型: Journal Article
    黄酮广泛存在于植物中,在植物防御害虫中起着重要作用。许多害虫,比如棉铃虫,以黄酮为线索上调黄酮解毒的反防御基因。然而,黄酮诱导基因及其连接的顺式调节元件的光谱仍不清楚。在这项研究中,通过RNA-seq发现了48个差异表达基因(DEGs)。这些DEGs主要集中在视黄醇代谢和药物代谢-细胞色素P450途径中。对24个上调基因的启动子区域进行进一步的计算机模拟分析,通过MEME预测了两个基序和五个先前表征的顺式元件,包括CRE,TRE,EcRE,XRE-AhR和ARE。对黄酮诱导型羧酸酯酶基因CCE001j的启动子区域中的两个预测基序和两个不同版本的ARE(称为ARE1和ARE2)的功能分析,证实了这两个基序和ARE2不负责棉铃虫反防御基因的黄酮诱导,而ARE1是一种新的黄酮异生反应元件(XRE-Fla),在黄酮诱导CCE001j中起决定性作用。本研究对于进一步了解植物与食草昆虫的拮抗相互作用具有重要意义。
    Flavone is widely found in plants and plays an important role in plant defense against pests. Many pests, such as Helicoverpa armigera, use flavone as a cue to upregulate counter-defense genes for detoxification of flavone. Yet the spectrum of the flavone-inducible genes and their linked cis-regulatory elements remains unclear. In this study, 48 differentially expressed genes (DEGs) were found by RNA-seq. These DEGs were mainly concentrated in the retinol metabolism and drug metabolism-cytochrome P450 pathways. Further in silico analysis of the promoter regions of 24 upregulated genes predicted two motifs through MEME and five previously characterized cis-elements including CRE, TRE, EcRE, XRE-AhR and ARE. Functional analysis of the two predicted motifs and two different versions of ARE (named ARE1 and ARE2) in the promoter region of the flavone-inducible carboxylesterase gene CCE001j verified that the two motifs and ARE2 are not responsible for flavone induction of H. armigera counter-defense genes, whereas ARE1 is a new xenobiotic response element to flavone (XRE-Fla) and plays a decisive role in flavone induction of CCE001j. This study is of great significance for further understanding the antagonistic interaction between plants and herbivorous insects.
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  • 文章类型: Journal Article
    无法解释的不孕症是指一种诊断,其中所有标准检查通常都是正常的,并且在大约30-40%的不育夫妇和25-50%的原因不明的不孕症患者中遇到子宫内膜异位症。原因不明的不孕症被认为与子宫内膜异位症密切相关,子宫内膜异位症患者的血清和腹膜液中Fetuin-A水平升高。Fetuin-A被认为是子宫内膜异位症的诊断标志物,对几种疾病具有抗炎作用。氧化应激也是女性不孕症病因的核心。这项研究的目的是评估血清Fetuin-A和氧化应激参数浓度对无法解释的不孕症的影响。
    在研究中,血清胎球蛋白A,IL-1β,CAI,TAS,TOS水平,使用酶联免疫吸附测定法在诊断出无法解释的不育症女性(n=44)和对照(n=41)的血清中测量PON和ARE酶活性。
    不明原因不育患者与对照组在血清IL-1β方面无统计学差异,CAI,OSI,和PON水平(p>0.05)。不明原因不孕症患者血清胎球蛋白A和ARE水平明显高于对照组,而血清TAS和TOS水平较低(分别为p<0.05,p<0.01,p<0.05,p<0.05)。
    据认为,Fetuin-A水平的升高可能是对炎症过程的反应,而ARE活性的增加可能是无法解释的不孕症中氧化剂-抗氧化剂平衡受损的迹象。这可能有助于不孕症的发病机制,并且所获得的数据将在这个意义上为要完成的新工作做出重大贡献。
    UNASSIGNED: Unexplained infertility refers to a diagnosis in which all standard examinations are usually normal and is statistically seen in approximately 30-40% of infertile couples and endometriosis encountered in 25-50% of patients with unexplained infertility. Unexplained infertility is thought to be closely associated with endometriosis and serum and peritoneal fluid levels of Fetuin-A is increased in patients with endometriosis. Fetuin-A is proposed as a diagnostic marker for endometriosis and has anti-inflammatory effects on several diseases. Oxidative stress also is central to the etiopathogenesis of infertility in women. The aim of this study was to evaluate serum Fetuin-A and oxidative stress parameter concentrations impact on unexplained infertility.
    UNASSIGNED: In the study, serum Fetuin-A, IL-1β, CA I, TAS, TOS levels, and PON and ARE enzyme activities were measured using the Enzyme-Linked ImmunoSorbent Assay in the sera of diagnosed unexplained infertility females (n=44) and controls (n=41).
    UNASSIGNED: There was no statistically significant difference between unexplained infertile patients and control groups in terms of serum IL-1β, CA I, OSI, and PON levels (p>0.05). Serum Fetuin-A and ARE levels were significantly higher in unexplained infertility compared with the control, whereas serum TAS and TOS levels were lower (p<0.05, p<0.01, p<0.05, p<0.05, respectively).
    UNASSIGNED: It is thought that increased Fetuin-A levels may be a response to the inflammatory process and increased ARE activity may be a sign of the impaired oxidant-antioxidant balance in unexplained infertility. This may contribute to the pathogenesis of infertility, and the data obtained will make a significant contribution to new works to be done in this sense.
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  • 文章类型: Journal Article
    有机异硫氰酸酯(ITC)是一类抗癌剂,其由芸苔属蔬菜产生的芥子油苷的酶促降解天然产生。以前的研究表明,ITC的结构会影响其效能和抗癌特性的模式,为合成的准备和评估开辟了道路,非天然ITC类似物。这项研究描述了79种非天然ITC类似物文库的制备,旨在进一步探索芳基ITC和第二代的结构-活性关系,官能化的联芳基ITC变体。对ITC候选物进行抗增殖和抗氧化反应元件(ARE)对人MCF-7细胞诱导能力的分叉评估。这项研究的结果导致鉴定出(1)几种关键的结构-活性关系和(2)具有有效抗增殖特性的主要ITC。
    Organic isothiocyanates (ITCs) are a class of anticancer agents which naturally result from the enzymatic degradation of glucosinolates produced by Brassica vegetables. Previous studies have demonstrated that the structure of an ITC impacts its potency and mode(s) of anticancer properties, opening the way to preparation and evaluation of synthetic, non-natural ITC analogues. This study describes the preparation of a library of 79 non-natural ITC analogues intended to probe further structure-activity relationships for aryl ITCs and second-generation, functionalized biaryl ITC variants. ITC candidates were subjected to bifurcated evaluation of antiproliferative and antioxidant response element (ARE)-induction capacity against human MCF-7 cells. The results of this study led to the identification of (1) several key structure-activity relationships and (2) lead ITCs demonstrating potent antiproliferative properties.
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  • 文章类型: Journal Article
    脆性X相关蛋白-1(FXR1)基因在卵巢癌患者中高度扩增,这种扩增与FXR1mRNA和蛋白质的表达增加有关。FXR1的表达与癌细胞的存活和增殖直接相关。翻译的表面感测(SUnSET)测定证明FXR1增强癌细胞中的整体翻译。反相蛋白质阵列(RPPA)揭示cMYC是FXR1的关键靶标。机械上,FXR1与cMYC的3'非翻译区(3'UTR)内存在的富含AU的元件(ARE)结合并稳定其表达。此外,FXR1中的RGG结构域与eIF4A1和eIF4E蛋白相互作用。FXR1的这两种相互作用导致cMYCmRNA的环化并促进真核翻译起始因子募集到翻译起始位点。简而言之,我们揭示了FXR1促进癌细胞中cMYC水平的机制。
    Fragile X-related protein-1 (FXR1) gene is highly amplified in patients with ovarian cancer, and this amplification is associated with increased expression of both FXR1 mRNA and protein. FXR1 expression directly associates with the survival and proliferation of cancer cells. Surface sensing of translation (SUnSET) assay demonstrates that FXR1 enhances the overall translation in cancer cells. Reverse-phase protein array (RPPA) reveals that cMYC is the key target of FXR1. Mechanistically, FXR1 binds to the AU-rich elements (ARE) present within the 3\' untranslated region (3\'UTR) of cMYC and stabilizes its expression. In addition, the RGG domain in FXR1 interacts with eIF4A1 and eIF4E proteins. These two interactions of FXR1 result in the circularization of cMYC mRNA and facilitate the recruitment of eukaryotic translation initiation factors to the translation start site. In brief, we uncover a mechanism by which FXR1 promotes cMYC levels in cancer cells.
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  • 文章类型: Journal Article
    周围神经损伤是复杂的医疗条件之一,他们仍在等待他们高效的一线治疗。在这项研究中,在小鼠模型中,以不同的剂量评估了Calotropisprocera粗叶在改善坐骨神经损伤后的功能恢复方面的作用。将32只健康白化病小鼠分为四组作为正常饮食组(对照组,n=8)和C.procera食物组(50mg/kg(n=8),100mg/kg(n=8)和200mg/kg(n=8))。进行行为分析以评估和比较所有组中改善的功能恢复以及骨骼肌质量测量。分析血清样品的氧化应激标志物。结果表明,C.procera叶以剂量依赖性方式显示出感觉运动功能再生的统计学显着(p<.05)增加,如行为分析所证实的,肌肉质量恢复和TOS的显着下降以及TAC的显着增加以及抗氧化酶的活性增强。
    Peripheral nerve injuries are among those complicated medical conditions, which are still waiting for their highly effective first-line therapies. In this study, the role of Calotropis procera crude leaves was evaluated at different doses for their effectiveness in improving functional recovery following sciatic nerve injury-induced in the mouse model. Thirty-two healthy albino mice were divided into four groups as Normal chow group (control, n = 8) and C. procera chow groups (50 mg/kg (n = 8), 100 mg/kg (n = 8) and 200 mg/kg (n = 8)). Behavioral analyses were performed to assess and compare improved functional recovery along with skeletal muscle mass measurement in all groups. Serum samples were analyzed for oxidative stress markers. Results showed that C. procera leaves at dose-dependent manner showed statistically prominent (p < .05) increase in sensorimotor functions reclamation as confirmed by behavioral analyses along with muscle mass restoration and prominent decline in TOS and momentous increase in TAC along with the augmented activity of antioxidative enzymes.
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  • 文章类型: Journal Article
    BACKGROUND: Severe sepsis, a major health problem worldwide, has become one of the leading causes of death in ICU patients. Further study on the pathogenesis and treatment of acute kidney injury (AKI) is of great significance to reduce high mortality rate of sepsis. In this study, the mechanism by which ubiquitin specific peptidase 10 (USP10) reduces sepsis-induced AKI was investigated. Ligation and perforation of cecum (CLP) was employed to establish C57BL/6 mouse models of sepsis. Hematoxylin-eosin (H&E) staining was performed to detect renal injury. The concentrations of serum creatinine (Cr), urea nitrogen (BUN) and cystatin C (Cys C) were determined using a QuantiChrom™ Urea Assay kit. RT-qPCR and western blot were conducted to assess the USP10 expression level. DHE staining was used to detect reactive oxygen species (ROS) levels. H2O2, MDA and SOD levels were assessed using corresponding colorimetric kits. Western blot was used to examine the expression levels of Bcl-2, Bax, cleaved caspase-3, Sirt6, Nrf2 and HO-1. MTT assay was used to determine cell viability, whereas TUNEL staining and flow cytometry were used to assess cell apoptosis.
    RESULTS: In this study, we found that USP10 was decreased in CLP-induced mouse renal tissues. We identified that USP10 alleviated renal dysfunction induced by CLP. Moreover, USP10 was found to reduce oxidative stress, and abated LPS-induced renal tubular epithelial cell injury and apoptosis. Finally, we discovered that USP10 promoted activation of the NRF2/HO-1 pathway through SIRT6 and attenuated LPS-induced renal tubular epithelial cell injury.
    CONCLUSIONS: This study found that USP10 activates the NRF2/ARE signaling through SIRT6. USP10 alleviates sepsis-induced renal dysfunction and reduces renal tubular epithelial cell apoptosis and oxidative stress.
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  • 文章类型: Journal Article
    Sesamin, a major lignin in sesame seeds, possesses health-promoting properties. Sesamin feeding suppresses several aging-related phenotypes such as age-dependent accumulation of damaged proteins in the muscles and neuronal loss in the brains of Drosophila adults with high levels of reactive oxygen species. Sesamin promotes the transcription of several genes that are responsible for oxidative stress, although the underlying mechanism remains unclear. Here, we aimed to demonstrate that sesamin mediates its action through activation of a transcription factor, Nrf2 (Cnc in Drosophila), essential for anti-aging oxidative stress response. Nrf2/Cnc activation was determined using the antioxidant response element, Green Fluorescence Protein reporter, that can monitor Nrf2/Cnc-dependent transcription. We observed strong fluorescence in the entire bodies, particularly in the abdomens and brains, of adult flies fed sesamin. Interestingly, Nrf2/Cnc was strongly activated in neuronal cells, especially in several neuron types, including glutamatergic and cholinergic, and some dopaminergic and/or serotonergic neurons but not in GABAergic neurons or the mushroom bodies of flies fed sesamin. These results indicate that the anti-aging effects of sesamin are exerted via activation of Nrf2/Cnc-dependent transcription to circumvent oxidative stress accumulation in several types of neurons of adult brains. Sesamin could be explored as a potential dietary supplement for preventing neurodegeneration associated with accumulation of oxidative stress.
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