ligand design

  • 文章类型: Journal Article
    开发了一种Cu/Co串联催化方案,以使用CO2/H2和PMHS(聚甲基氢硅氧烷)作为容易获得且环境友好的氢化物源进行烯烃的加氢甲酰化。该方法是通过两步方法进行的,该方法包括通过氢硅烷进行铜催化的CO2还原,然后用H2和原位形成的CO进行钴促进的加氢甲酰化。优化的三磷氧化物配体,这可能有助于CO的迁移插入,从而为末端和内部烯烃提供中等至优异的产率。这种富含地球的金属催化提供了一种可靠和有效的方式来提供工业中有用的醛,使用硅副产物PMHS作为氢源和可再生CO2作为羰基源。
    A Cu/Co tandem catalysis protocol was developed to conduct the hydroformylation of olefins using CO2/H2 and PMHS (polymethylhydrosiloxane) as a readily available and environmentally friendly hydride source. This methodology was performed via a two-step approach consisting of the copper-catalyzed reduction of CO2 by hydrosilane and subsequent cobalt-promoted hydroformylation with H2 and the in situ formed CO. The optimized triphos oxide ligand, which presumably facilitates the migratory insertion of CO gives moderate to excellent yields for both terminal and internal alkenes. This earth-abundant metal catalysis provides a reliable and efficient way to afford useful aldehydes in industry using silicon by-product PMHS as hydrogen source and renewable CO2 as carbonyl source.
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  • 文章类型: Journal Article
    钙钛矿纳米晶体(PNC)具有广泛应用的巨大潜力,如颜色转换,X射线闪烁体,和活性激光介质。然而,差的固有稳定性和对包括水分和氧气的环境刺激的高敏感性已成为PNC材料商业化的瓶颈。适当的阻隔材料设计可以有效地提高PNC的稳定性。特别是,在有机硅基质中包装PNC的策略可以整合基于无机氧化物和基于聚合物的封装路线的优势。然而,惰性长碳链配体(例如,油酸,油胺)用于硅基封装的当前配体体系对有机硅基质的交联有害,导致纳米晶体薄膜的性能不足,如低透明度和大的表面粗糙度。在这里,我们提出了一种由(3-氨基丙基)三乙氧基硅烷(APTES)和(3-氨基丙基)三乙氧基硅烷与戊二酸酐(APTES-PA)组成的双有机硅配体体系,取代惰性长碳链配体,提高有机硅包覆PNC薄膜的性能。因此,通过容易的溶液流延方法制备的强荧光PNC膜表现出高透明度和降低的表面粗糙度,同时在各种恶劣环境中保持高稳定性。优化后的PNC薄膜最终作为闪烁体应用于X射线成像系统中,显示20lp/mm以上的高空间分辨率。通过设计这种有前途的用于PNC薄膜的双有机硅配体体系,我们的工作强调了封端配体的分子结构对PNC膜的光学性能的关键影响。
    Perovskite nanocrystals (PNCs) bear a huge potential for widespread applications, such as color conversion, X-ray scintillators, and active laser media. However, the poor intrinsic stability and high susceptibility to environmental stimuli including moisture and oxygen have become bottlenecks of PNC materials for commercialization. Appropriate barrier material design can efficiently improve the stability of the PNCs. Particularly, the strategy for packaging PNCs in organosilicon matrixes can integrate the advantages of inorganic-oxide-based and polymer-based encapsulation routes. However, the inert long-carbon-chain ligands (e.g., oleic acid, oleylamine) used in the current ligand systems for silicon-based encapsulation are detrimental to the cross-linking of the organosilicon matrix, resulting in performance deficiencies in the nanocrystal films, such as low transparency and large surface roughness. Herein, we propose a dual-organosilicon ligand system consisting of (3-aminopropyl)triethoxysilane (APTES) and (3-aminopropyl)triethoxysilane with pentanedioic anhydride (APTES-PA), to replace the inert long-carbon-chain ligands for improving the performance of organosilicon-coated PNC films. As a result, strongly fluorescent PNC films prepared by a facile solution-casting method demonstrate high transparency and reduced surface roughness while maintaining high stability in various harsh environments. The optimized PNC films were eventually applied in an X-ray imaging system as scintillators, showing a high spatial resolution above 20 lp/mm. By designing this promising dual organosilicon ligand system for PNC films, our work highlights the crucial influence of the molecular structure of the capping ligands on the optical performance of the PNC film.
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  • 文章类型: Journal Article
    在这里,多种类型的手性Os(II)配合物已经被设计来解决吸引人但具有挑战性的不对称C(SP3)-H官能化,其中发现Os(II)/Salox物种对于实现不对称C(sp3)-H酰胺化的精确立体控制最有效。如富含对映体的吡咯烷酮合成所示,这种定制的Os(II)/Salox催化剂可以有效地在二恶唑酮底物的γ位进行分子内位点/对映选择性C(sp3)-H酰胺化,其中苄基,带有各种取代形式的炔丙基和烯丙基是很好的相容,提供具有良好的er值(高达99:1)和不同官能度(>35个实例)的相应手性γ-内酰胺产物。已开发的手性Os(II)/Salox系统在催化能量分布和手性诱导方面的独特性能优势已通过综合实验和计算研究进一步阐明。
    Herein, multiple types of chiral Os(II) complexes have been designed to address the appealing yet challenging asymmetric C(sp3)-H functionalization, among which the Os(II)/Salox species is found to be the most efficient for precise stereocontrol in realizing the asymmetric C(sp3)-H amidation. As exemplified by the enantioenriched pyrrolidinone synthesis, such tailored Os(II)/Salox catalyst efficiently enables an intramolecular site-/enantioselective C(sp3)-H amidation in the γ-position of dioxazolone substrates, in which benzyl, propargyl and allyl groups bearing various substituted forms are well compatible, affording the corresponding chiral γ-lactam products with good er values (up to 99 : 1) and diverse functionality (>35 examples). The unique performance advantage of the developed chiral Os(II)/Salox system in terms of the catalytic energy profile and the chiral induction has been further clarified by integrated experimental and computational studies.
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  • 文章类型: Journal Article
    IMes(IMes=1,3-双(2,4,6-三甲基苯基)咪唑-2-亚基)和IPr(IPr=1,3-双(2,6-二异丙基苯基)咪唑-2-亚基)是迄今为止最常用的N-杂环卡宾配体在均相催化中,然而,尽管有许多优点,这些配体是有限的缺乏空间灵活性的催化口袋。我们报告了一类新的独特的不对称N-杂环卡宾配体,其特征在于咪唑-2-亚基结构中可自由旋转的N-芳族翼尖。可旋转的N-CH2Ar键与构象固定的N-Ar键的组合导致高度模块化的配体拓扑结构,输入IMes和IPr无法访问的几何范围。这些配体在Cu(I)催化的炔烃的β-硼氢化反应中具有高度反应性,对含硼化合物的合成产生了革命性影响的原型硼基铜化过程。此类中最具反应性的Cu(I)-NHC已与MilliporeSigma合作商业化,以使合成化学界能够广泛获得。配体逐渐覆盖从37.3%到52.7%的%Vbur几何形状,后者代表迄今为止为IPr类似物描述的最大%Vbur,同时保留N翼尖的全部灵活性。考虑到N-杂环卡宾催化中对新型几何空间的模块化访问,我们预计这一概念将为有机合成带来新的机遇,药物发现和活性金属中心的稳定。
    IMes (IMes=1,3-bis(2,4,6-trimethylphenyl)imidazol-2-ylidene) and IPr (IPr=1,3- bis(2,6-diisopropylphenyl)imidazol-2-ylidene) represent by far the most frequently used N-heterocyclic carbene ligands in homogeneous catalysis, however, despite numerous advantages, these ligands are limited by the lack of steric flexibility of catalytic pockets. We report a new class of unique unsymmetrical N-heterocyclic carbene ligands that are characterized by freely-rotatable N-aromatic wingtips in the imidazol-2-ylidene architecture. The combination of rotatable N-CH2 Ar bond with conformationally-fixed N-Ar linkage results in a highly modular ligand topology, entering the range of geometries inaccessible to IMes and IPr. These ligands are highly reactive in Cu(I)-catalyzed β-hydroboration, an archetypal borylcupration process that has had a transformative impact on the synthesis of boron-containing compounds. The most reactive Cu(I)-NHC in this class has been commercialized in collaboration with MilliporeSigma to enable broad access of the synthetic chemistry community. The ligands gradually cover %Vbur geometries ranging from 37.3 % to 52.7 %, with the latter representing the largest %Vbur described for an IPr analogue, while retaining full flexibility of N-wingtip. Considering the modular access to novel geometrical space in N-heterocyclic carbene catalysis, we anticipate that this concept will enable new opportunities in organic synthesis, drug discovery and stabilization of reactive metal centers.
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  • 文章类型: Journal Article
    1,3-二烯的催化区域和对映选择性加氢官能化的发展仍然是一个挑战,需要深入了解反应机理。我们在此通过密度泛函理论(DFT)计算彻底研究了1,3-二烯与酮的Ni催化加氢烷基化的反应机理。它揭示了该反应是通过逐步氧化添加EtO-H引发的,然后是1,3-二烯迁移插入以产生烷基镍(II)中间体,而不是实验提出的配体到配体的氢转移(LLHT)机制。此外,我们合理化了tBuOK在随后添加酮烯醇化物和金属转移过程中的作用。基于整个催化作用,CC还原消除步骤,结果是确定速率和对映选择性的步骤。此外,我们公开了产品的区域选择性和对映选择性的起源,并发现1,2-选择性在于配体-底物静电相互作用的组合效应,轨道相互作用和Pauli排斥,而对映选择性主要来自底物-配体空间排斥。基于机理研究,设计了具有更高对映选择性的新的双芳基双膦配体,这将有助于改善目前的催化体系和开发新的过渡金属催化的加氢烷基化反应。
    The development of the catalytic regio- and enantioselective hydrofunctionalization of 1,3-dienes remains a challenge and requires deep insight into the reaction mechanisms. We herein thoroughly studied the reaction mechanism of the Ni-catalyzed hydroalkylation of 1,3-dienes with ketones by density functional theory (DFT) calculations. It reveals that the reaction is initiated by stepwise oxidative addition of EtO-H followed by 1,3-diene migratory insertion to generate the alkylnickel(II) intermediate, rather than the experimentally proposed ligand-to-ligand hydrogen transfer (LLHT) mechanism. In addition, we rationalized the role of t BuOK in the subsequent addition of enolate of ketone and transmetalation process. Based on the whole catalysis, the CC reductive elimination step, turns out to be the rate- and enantioselectivity-determining step. Furthermore, we disclosed the origins of the regio- and enantioselectivity of the product, and found that the 1,2-selectivity lies in the combination effects of the ligand-substrate electrostatic interactions, orbital interactions and Pauli repulsions, while the enantioselectivity mainly arises from substrate-ligand steric repulsions. Based on mechanistic study, new biaryl bisphosphine ligands affording higher enantioselectivity were designed, which will help to improve current catalytic systems and develop new transition-metal-catalyzed hydroalkylations.
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  • 文章类型: Journal Article
    2019年冠状病毒病(COVID-19)的爆发引发了全球对高级诊断和疫苗接种的迫切需求。高亲和力配体的发现对疫苗和诊断试剂的生产具有重要意义。针对严重急性呼吸综合征-冠状病毒2的刺突蛋白的受体结合域(RBD),引入蛋白A的Z域螺旋外表面的界面,构建了用于筛选ZRBD亲和体配体的虚拟文库。使用HADDOCK软件进行分子对接,和三个潜在的ZRBD成员,获得ZRBD-02、ZRBD-04和ZRBD-07。分子动力学(MD)模拟验证了ZRBD亲和体与RBD的结合是由静电相互作用驱动的。每个残基的自由能分解分析进一步证实了Z结构域的螺旋α1上具有负电荷特征的四个残基参与了该过程。通过微尺度热电泳的结合亲和力分析显示ZRBD亲和体对RBD结合具有高亲和力,在三个潜在的ZRBD亲体中,ZRBD-07的最低解离常数为36.3nmol/L。在这里,在与硫醇活化的Sepharose6快速流动(SepFF)凝胶偶联后,选择ZRBD-02和ZRBD-07亲和体用于色谱验证。色谱实验表明,RBD可以在两种ZRBDSepFF凝胶上结合,并用0.1mol/L的NaOH洗脱。此外,ZRBD-07SepFF凝胶对RBD具有更高的亲和力。该研究为配合体配体的设计提供了新思路,并验证了配合体配体在复杂原料RBD纯化中的应用潜力。
    The outbreak of coronavirus disease 2019 (COVID-19) has sparked an urgent demand for advanced diagnosis and vaccination worldwide. The discovery of high-affinity ligands is of great significance for vaccine and diagnostic reagent manufacturing. Targeting the receptor binding domain (RBD) from the spike protein of severe acute respiratory syndrome-coronavirus 2, an interface at the outer surface of helices on the Z domain from protein A was introduced to construct a virtual library for the screening of ZRBD affibody ligands. Molecular docking was performed using HADDOCK software, and three potential ZRBD affibodies, ZRBD-02, ZRBD-04, and ZRBD-07, were obtained. Molecular dynamics (MD) simulation verified that the binding of ZRBD affibodies to RBD was driven by electrostatic interactions. Per-residue free energy decomposition analysis further substantiated that four residues with negative-charge characteristics on helix α1 of the Z domain participated in this process. Binding affinity analysis by microscale thermophoresis showed that ZRBD affibodies had high affinity for RBD binding, and the lowest dissociation constant was 36.3 nmol/L for ZRBD-07 among the three potential ZRBD affibodies. Herein, ZRBD-02 and ZRBD-07 affibodies were selected for chromatographic verifications after being coupled to thiol-activated Sepharose 6 Fast Flow (SepFF) gel. Chromatographic experiments showed that RBD could bind on both ZRBD SepFF gels and was eluted by 0.1 mol/L NaOH. Moreover, the ZRBD-07 SepFF gel had a higher affinity for RBD. This research provided a new idea for the design of affibody ligands and validated the potential of affibody ligands in the application of RBD purification from complex feedstock.
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  • 文章类型: Journal Article
    在这里,未发现铜(I)催化的3,3-二取代环丙烯的不对称氢磷化反应,这提供了一系列高到优异的非对映和对映选择性的膦衍生物。该方法对3,3-二取代的环丙烯和二芳基膦具有广泛的底物范围。高立体选择性归因于Cu(I)-(R,R)-QUINOXP*络合物在化学计量的HPPh2和产生的膦和Cu(I)-(R,R)-QUINOXP*复杂。最后,该方法用于合成基于环丙烷骨架的新手性膦-烯烃化合物,其中之一在Rh催化的苯基硼酸与各种α的不对称共轭加成中充当出色的配体,β-不饱和化合物。
    Herein, a copper(I)-catalyzed asymmetric hydrophosphination of 3,3-disubstituted cyclopropenes is reported. It provides a series of phosphine derivatives in high to excellent diastereo- and enantioselectivities. The methodology enjoys broad substrate scope on both 3,3-disubstituted cyclopropenes and diarylphosphines. The high stereoselectivity is attributed to both the high stability of the Cu(I)-(R,R)-QUINOXP* complex in the presence of stoichiometric HPPh2 and the produced phosphines, and the high-performance asymmetric induction of the Cu(I)-(R,R)-QUINOXP* complex. Finally, the method is used for the synthesis of new chiral phosphine-olefin compounds built on a cyclopropane skeleton, one of which serves as a wonderful ligand in Rh-catalyzed asymmetric conjugate addition of phenylboronic acid to various α,β-unsaturated compounds.
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  • 文章类型: Journal Article
    当根据蛋白质受体的结构设计肽配体时,在不需要预先选择其氨基酸序列的情况下缩小配体的可能结合位置和结合构象是非常有用的。这里,我们基于最近报道的名为SCUBA(侧链-未知主链排列)的统计能量模型,构建了用于此目的的工具并对其进行基准测试,用于在不考虑特定氨基酸序列的情况下设计蛋白质主链.有了这个工具,用SCUBA驱动的随机模拟和模拟退火产生和优化不同局部构象类型的骨架片段,然后进行排序和聚集以获得与受体的强SCUBA相互作用能量的代表性骨架片段姿势。我们对111种已知的蛋白质-肽复合物结构进行了计算基准测试。当结合的配体处于链构象时,该方法能够从肽配体的实验结构产生低SCUBA能量和低均方根偏差的主链片段。当结合的配体是螺旋或线圈时,对于大约50%的基准情况,已经产生了具有与实验结构相似的结合姿势的低能主链片段。我们已经通过原子分子动力学模拟检查了许多预测的配体-受体复合物,其中已发现肽配体停留在预测的结合位点并保持其局部构象。这些结果表明,通过在SCUBA建模的骨架能量景观上鉴定出突出的最小值,可以设计与蛋白质受体结合的肽的有希望的骨架结构。
    When designing peptide ligands based on the structure of a protein receptor, it can be very useful to narrow down the possible binding positions and bound conformations of the ligand without the need to choose its amino acid sequence in advance. Here, we construct and benchmark a tool for this purpose based on a recently reported statistical energy model named SCUBA (Sidechain-Unknown Backbone Arrangement) for designing protein backbones without considering specific amino acid sequences. With this tool, backbone fragments of different local conformation types are generated and optimized with SCUBA-driven stochastic simulations and simulated annealing, and then ranked and clustered to obtain representative backbone fragment poses of strong SCUBA interaction energies with the receptor. We computationally benchmarked the tool on 111 known protein-peptide complex structures. When the bound ligands are in the strand conformation, the method is able to generate backbone fragments of both low SCUBA energies and low root mean square deviations from experimental structures of peptide ligands. When the bound ligands are helices or coils, low-energy backbone fragments with binding poses similar to experimental structures have been generated for approximately 50% of benchmark cases. We have examined a number of predicted ligand-receptor complexes by atomistic molecular dynamics simulations, in which the peptide ligands have been found to stay at the predicted binding sites and to maintain their local conformations. These results suggest that promising backbone structures of peptides bound to protein receptors can be designed by identifying outstanding minima on the SCUBA-modeled backbone energy landscape.
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  • 文章类型: Journal Article
    将铜(Cu)离子掺入聚合物颗粒中可以是模拟铜酶的简单策略,但是同时控制纳米酶和活性位点的结构是具有挑战性的。在这份报告中,我们提出了一种新型的双配体(L2),其中包含通过四环氧乙烷(4EO)间隔基连接的联吡啶基团。在磷酸盐缓冲液中,Cu-L2混合物形成配位络合物,该络合物(在适当的组成下)可以结合聚丙烯酸(PAA)以产生具有明确结构和尺寸的催化活性聚合物纳米颗粒。我们称之为“纳米酶”。操纵L2/Cu混合比并使用磷酸盐作为共结合基序,合作铜中心被意识到表现出促进的氧化活性。如此设计的纳米酶的结构和活性在升高温度和多个应用循环后保持稳定。增加离子强度导致活性增强,对天然酪氨酸酶也有反应。通过我们的合理设计,我们获得了具有优化的结构和活性位点的纳米酶,在几个方面优于天然酶。因此,这种方法证明了开发功能性纳米酶的新策略,这很可能会刺激这类催化剂的应用。
    Incorporating copper (Cu) ions into polymeric particles can be a straightforward strategy for mimicking copper enzymes, but it is challenging to simultaneously control the structure of the nanozyme and of the active sites. In this report, we present a novel bis-ligand (L2) containing bipyridine groups connected by a tetra-ethylene oxide (4EO) spacer. In phosphate buffer the Cu-L2 mixture forms coordination complexes that (at proper composition) can bind polyacrylic acid (PAA) to produce catalytically active polymeric nanoparticles with well-defined structure and size, which we refer to as \'nanozymes\'. Manipulating the L2/Cu mixing ratio and using phosphate as a co-binding motif, cooperative copper centres are realized that exhibit promoted oxidation activity. The structure and activity of the so-designed nanozymes remain stable upon increasing temperature and over multiple cycles of application. Increasing ionic strength causes enhanced activity, a response also seen for natural tyrosinase. By means of our rational design we obtain nanozymes with optimized structure and active sites that in several respects outperform natural enzymes. This approach therefore demonstrates a novel strategy for developing functional nanozymes, which may well stimulate the application of this class of catalysts.
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  • 文章类型: Journal Article
    可以通过修饰辅助配体来利用金属-氢化物络合物的反应性。为了提高关键Mn-H中间体的氢化物供体能力并减少空间位阻,我们在此报告了用于氢化反应的通用且有效的基于NHC的NNC-钳Mn催化剂的合理设计。这种新开发的催化剂表现出比相应的NNP-夹钳Mn催化剂更高的活性,因为它具有降低的空间位阻和通过π-反键相互作用提高的Mn-Hσ-键合轨道能级。使用这种高活性的NNC夹式Mn催化剂,丰富的极性不饱和化合物阵列(>80例),包括酯,N-杂芳烃,酰胺,碳酸盐,和脲衍生物,在相对温和的条件下成功氢化。这项工作代表了一般无膦的Mn催化的加氢系统的罕见实例。
    The reactivity of metal-hydride complexes can be harnessed by the modification of ancillary ligands. With the aim of improving the hydride-donor ability of the key Mn-H intermediate and reducing steric hindrance, we herein report the rational design of a versatile and efficient NHC-based NNC-pincer Mn catalyst for hydrogenation reactions. This newly developed catalyst exhibited higher activity than the corresponding NNP-pincer Mn catalyst owing to its reduced steric hindrance and enhanced Mn-H σ-bonding orbital energy level through a π-antibonding interaction. Using this highly active NNC-pincer Mn catalyst, a rich array of polar unsaturated compounds (>80 examples) including esters, N-heteroarenes, amides, carbonates, and urea derivatives, were successfully hydrogenated under relatively mild conditions. This work represents a rare example of a general phosphine-free Mn-catalyzed hydrogenation system.
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