Vesicular Transport Proteins

囊泡转运蛋白
  • 文章类型: Journal Article
    下咽鳞状细胞癌(HSCC)是一种预后差、生活质量低的耳鼻喉科恶性肿瘤。已发现microRNA(miRNA)在多种肿瘤的发生发展中起重要作用。本研讨发明miRNA-107(miR-107)在HSCC中的表达程度显著降低。随后,我们通过生物信息学分析筛选出与miR-107相关的下游直接靶基因神经元囊泡运输相关1(NSG1),发现NSG1在HSCC组织中表达增加。miR-107在HSCC细胞中过度表达后,观察到miR-107直接抑制NSG1表达,导致细胞凋亡增加,减少增殖,和降低HSCC细胞的侵袭能力。随后的实验涉及在HSCC细胞中NSG1的过表达和敲低表明,升高的NSG1水平增强细胞增殖,迁移,和入侵,而在NSG1敲低时观察到相反的效果。进一步的研究表明,HSCC细胞中NSG1水平的变化伴随着ERK信号通路蛋白的改变,提示NSG1在HSCC细胞增殖中的潜在调节作用,迁移,并通过ERK途径进行入侵。这些发现强调了miR-107和NSG1在下咽癌转移中的意义。为HSCC的治疗干预和预后评估提供有希望的目标。
    Hypopharyngeal squamous cell carcinoma (HSCC) is a kind of malignant tumor with a poor prognosis and low quality of life in the otolaryngology department. It has been found that microRNA (miRNA) plays an important role in the occurrence and development of various tumors. This study found that the expression level of miRNA-107 (miR-107) in HSCC was significantly reduced. Subsequently, we screened out the downstream direct target gene Neuronal Vesicle Trafficking Associated 1 (NSG1) related to miR-107 through bioinformatics analysis and found that the expression of NSG1 was increased in HSCC tissues. Following the overexpression of miR-107 in HSCC cells, it was observed that miR-107 directly suppressed NSG1 expression, leading to increased apoptosis, decreased proliferation, and reduced invasion capabilities of HSCC cells. Subsequent experiments involving the overexpression and knockdown of NSG1 in HSCC cells demonstrated that elevated NSG1 levels enhanced cell proliferation, migration, and invasion, while the opposite effect was observed upon NSG1 knockdown. Further investigations revealed that changes in NSG1 levels in the HSCC cells were accompanied by alterations in ERK signaling pathway proteins, suggesting a potential regulatory role of NSG1 in HSCC cell proliferation, migration, and invasion through the ERK pathway. These findings highlight the significance of miR-107 and NSG1 in hypopharyngeal cancer metastasis, offering promising targets for therapeutic interventions and prognostic evaluations for HSCC.
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  • 文章类型: Journal Article
    背景:本文试图阐明空泡蛋白分选相关蛋白72同源物(VPS72)在前列腺癌(PCa)进展中的作用和机制。
    方法:前列腺癌患者的临床信息和基因表达谱来自癌症基因组图谱(TCGA)。研究了VPS72在PCa中的表达和VPS72影响PCa进展的潜在机制。接下来,我们进行了COX回归分析,以确定PCa的独立预后因素,并构造了一个列线图。使用“pRophetic”可以预期化疗药物的敏感性。随后,体外试验验证VPS72对PCa细胞增殖的影响,迁移和抗雄激素治疗的敏感性。
    结果:与正常组织相比,PCa组织中VPS72的表达明显更高。VPS72高表达与不良预后和不良临床病理因素之间存在显着相关性。基于VPS72表达式构建的列线图模型具有良好的预测性能。根据GSEA,VPS72相关基因在NF-kB通路中富集,PCa中细胞因子-细胞因子受体相互作用和趋化因子信号通路。尽管低VPS72表达的PCa更适合化疗药物,我们的体外实验表明,VPS72敲低显著降低了PCa细胞的迁移,扩散,以及对抗雄激素治疗的抗性。
    结论:总之,我们的研究结果表明,VPS72可能在PCa的恶性进展中起关键作用,其表达水平可作为PCa预后的可能生物标志物。
    BACKGROUND: This paper attempted to clarify the role and mechanism of vacuolar protein sorting-associated protein 72 homolog (VPS72) in the progression of prostate cancer (PCa).
    METHODS: Clinical information and gene expression profiles of patients with prostate cancer were obtained from The Cancer Genome Atlas (TCGA). VPS72 expression in PCa and the potential mechanism by which VPS72 affects PCa progression was investigated. Next, we performed COX regression analysis to identify the independent prognostic factors of PCa, and constructed a nomogram. The sensitivity of chemotherapeutic medications was anticipated using \"pRRophetic\". Subsequently, in vitro assays to validate the effect of VPS72 on PCa cell proliferation, migration and susceptibility to anti-androgen therapy.
    RESULTS: The expression of VPS72 was considerably higher in PCa tissues compared to normal tissues. Significant correlations were found between high VPS72 expression and a poor prognosis and adverse clinicopathological factors. The nomogram model constructed based on VPS72 expression has good predictive performance. According to GSEA, VPS72-related genes were enriched in the NF-kB pathways, cytokine-cytokine receptor interaction and chemokine signaling pathway in PCa. Although PCa with low VPS72 expression was more adaptable to chemotherapeutic medications, our in vitro experiment showed that VPS72 knockdown significantly decreased the PCa cell migration, proliferation, and resistance to anti-androgen therapy.
    CONCLUSIONS: In summary our findings suggests that VPS72 could play a crucial role in the malignant progression of PCa, and its expression level can be employed as a possible biomarker of PCa prognosis.
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  • 文章类型: Journal Article
    背景:脑实质中的β-淀粉样蛋白(Aβ)沉积是阿尔茨海默病(AD)病理的淀粉样蛋白级联假说的关键起始步骤。此外,斑块相关小胶质细胞的功能障碍,也称为疾病相关小胶质细胞(DAM)已被报道加速Aβ沉积和认知障碍。我们先前的研究表明,间歇性低氧训练(IHT)通过上调DAM中的自噬改善AD病理,从而增强寡聚Aβ(oAβ)清除。考虑到oAβ内化是oAβ清除的初始阶段,这项研究集中在IHT机制中涉及DAM上调Aβ摄取。
    方法:对8月龄APP/PS1小鼠或6月龄小胶质细胞液泡蛋白分选(VPS35)敲除小鼠在APP/PS1背景下(MGVPS35KO:APP/PS1)给药IHT28天。在IHT之后,评估小鼠的空间学习记忆能力.此外,通过估计神经纤维和突触密度来确定AD病理,Aβ斑块沉积,和Aβ在大脑中的负荷。构建Aβ暴露小胶质细胞模型,并对其进行IHT处理,以探讨相关机制。最后,使用荧光示踪技术测量髓样细胞2(TREM2)细胞内再循环和Aβ内化表达的触发受体.
    结果:我们的结果显示IHT改善了认知功能和Aβ病理。特别是,IHT通过增强小胶质细胞TREM2的细胞内转运功能来增强Aβ内吞作用,从而有助于Aβ清除。此外,IHT特别上调DAM中的VPS35,TREM2细胞内再循环增强的主要原因。IHT对MGVPS35KO:APP/PS1小鼠脑Aβ病理失去改善作用。最后,DAM中VPS35上调的IHT机制是由转录因子EB(TFEB)对VPS35的转录调节介导的。
    结论:IHT通过上调VPS35依赖的TREM2再循环来增强DAM中的Aβ内吞作用,从而促进oAβ的清除和Aβ病理的缓解。此外,TFEB对VPS35的转录调控表明小胶质细胞内吞作用与自噬之间存在密切联系。我们的研究进一步阐明了IHT改善AD病理的机制,并提供了支持IHT作为AD补充疗法的潜在应用的证据。
    BACKGROUND: Beta-amyloid (Aβ) deposition in the brain parenchyma is a crucial initiating step in the amyloid cascade hypothesis of Alzheimer\'s disease (AD) pathology. Furthermore, dysfunction of plaque-associated microglia, also known as disease-associated microglia (DAM) has been reported to accelerate Aβ deposition and cognitive impairment. Our previous research demonstrated that intermittent hypoxia training (IHT) improved AD pathology by upregulating autophagy in DAM, thereby enhancing oligomeric Aβ (oAβ) clearance. Considering that oAβ internalization is the initial stage of oAβ clearance, this study focused on the IHT mechanism involved in upregulating Aβ uptake by DAM.
    METHODS: IHT was administered to 8-month-old APP/PS1 mice or 6-month-old microglial vacuolar protein sorting 35 (VPS35) knockout mice in APP/PS1 background (MG VPS35 KO: APP/PS1) for 28 days. After the IHT, the spatial learning-memory capacity of the mice was assessed. Additionally, AD pathology was determined by estimating the nerve fiber and synapse density, Aβ plaque deposition, and Aβ load in the brain. A model of Aβ-exposed microglia was constructed and treated with IHT to explore the related mechanism. Finally, triggering receptor expressed on myeloid cells 2 (TREM2) intracellular recycling and Aβ internalization were measured using a fluorescence tracing technique.
    RESULTS: Our results showed that IHT ameliorated cognitive function and Aβ pathology. In particular, IHT enhanced Aβ endocytosis by augmenting the intracellular transport function of microglial TREM2, thereby contributing to Aβ clearance. Furthermore, IHT specifically upregulated VPS35 in DAM, the primary cause for the enhanced intracellular recycling of TREM2. IHT lost ameliorative effect on Aβ pathology in MG VPS35 KO: APP/PS1 mice brain. Lastly, the IHT mechanism of VPS35 upregulation in DAM was mediated by the transcriptional regulation of VPS35 by transcription factor EB (TFEB).
    CONCLUSIONS: IHT enhances Aβ endocytosis in DAM by upregulating VPS35-dependent TREM2 recycling, thereby facilitating oAβ clearance and mitigation of Aβ pathology. Moreover, the transcriptional regulation of VPS35 by TFEB demonstrates a close link between endocytosis and autophagy in microglia. Our study further elucidates the IHT mechanism in improving AD pathology and provides evidence supporting the potential application of IHT as a complementary therapy for AD.
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  • 文章类型: Journal Article
    神经发育障碍(NDD)是影响中枢或外周神经系统的结构和/或功能的早发性儿科疾病的临床和遗传异质性组。由于不同的遗传基础和临床变异性,实现NDD的精确分子诊断可能具有挑战性。在目前的研究中,我们调查了四个无关的巴基斯坦家庭中NDD的潜在遗传原因。使用外显子组测序(ES)作为诊断方法,我们在所有家族中已建立的NDD相关基因中发现了致病变异,包括一个迄今未报告的RELN变异体和三个复发的VPS13B变异体,DEGS1和SPG11。总的来说,我们的研究强调了ES作为临床诊断工具的潜力.
    Neurodevelopmental disorders (NDDs) are a clinically and genetically heterogeneous group of early-onset pediatric disorders that affect the structure and/or function of the central or peripheral nervous system. Achieving a precise molecular diagnosis for NDDs may be challenging due to the diverse genetic underpinnings and clinical variability. In the current study, we investigated the underlying genetic cause(s) of NDDs in four unrelated Pakistani families. Using exome sequencing (ES) as a diagnostic approach, we identified disease-causing variants in established NDD-associated genes in all families, including one hitherto unreported variant in RELN and three recurrent variants in VPS13B, DEGS1, and SPG11. Overall, our study highlights the potential of ES as a tool for clinical diagnosis.
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  • 文章类型: Journal Article
    酵母和菌丝之间的过渡对于调节白色念珠菌的共生和致病性至关重要。影响菌丝在固体培养基中入侵的机制,其缺乏与白色念珠菌的致病性更相关,尚未阐明。这里,我们发现VAM6或VPS41的破坏是同型液泡融合和蛋白质分选(HOPS)复合物的组成部分,或RabGTPaseYPT72,都负责液泡融合,导致菌丝在液体和固体培养基中的生长缺陷,但在固体琼脂上更明显。vac8Δ/Δ和GTR1OE-vam6Δ/Δ突变体的表型表明,这些缺陷主要是由驱动琼脂和器官渗透的机械力降低引起的,并确认菌丝机械渗透需要大的空泡。总之,我们的研究表明,液泡融合产生的大液泡支持菌丝渗透,并提供了一个观点,重新关注固体琼脂在评估白色念珠菌侵袭中的作用。
    The transition between yeast and hyphae is crucial for regulating the commensalism and pathogenicity in Candida albicans. The mechanisms that affect the invasion of hyphae in solid media, whose deficiency is more related to the pathogenicity of C. albicans, have not been elucidated. Here, we found that the disruption of VAM6 or VPS41 which are components of the homotypic vacuolar fusion and protein sorting (HOPS) complex, or the Rab GTPase YPT72, all responsible for vacuole fusion, led to defects in hyphal growth in both liquid and solid media, but more pronounced on solid agar. The phenotypes of vac8Δ/Δ and GTR1OE-vam6Δ/Δ mutants indicated that these deficiencies are mainly caused by the reduced mechanical forces that drive agar and organs penetration, and confirmed that large vacuoles are required for hyphal mechanical penetration. In summary, our study revealed that large vacuoles generated by vacuolar fusion support hyphal penetration and provided a perspective to refocus attention on the role of solid agar in evaluating C. albicans invasion.
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  • 文章类型: Journal Article
    患儿,男,1岁1个月,主诉\"转氨酶反复升高6月余\"。主要临床表现为整体发育迟缓,精神运动发育落后,小头畸形,肌张力低;实验室检查表现为反复肝功能异常,铜蓝蛋白降低;头颅影像学显示胼胝体薄,脑室系统扩大,脑沟裂池变深、增宽;肝脏病理表现为肝细胞轻度小泡性脂肪变性伴肝纤维化;基因检测结果提示空泡蛋白分选相关蛋白51基因变异。.
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  • 文章类型: Journal Article
    相关研究表明HCG18与肿瘤的发生和进展有关。在这项研究中,我们观察到PM2.5可以通过调节HCG18的表达来促进肺腺癌细胞的生长。进一步调查,包括过表达和敲除实验,阐明HCG18抑制miR-195,进而上调ATG14的表达,导致自噬上调。因此,暴露于PM2.5导致肺组织中HCG18表达升高,这反过来又增加了Atg14的表达,并通过抑制miR-195激活自噬途径,从而促进肿瘤发生。
    Relevant studies have indicated the association of HCG18 with tumour occurrence and progression. In this study, we observed that PM2.5 can enhance the growth of lung adenocarcinoma cells by modulating the expression of HCG18. Further investigations, including overexpression and knockout experiments, elucidated that HCG18 suppresses miR-195, which in turn upregulates the expression of ATG14, resulting in the upregulation of autophagy. Consequently, exposure to PM2.5 leads to elevated HCG18 expression in lung tissues, which in turn increases Atg14 expression and activates autophagy pathways through inhibition of miR-195, thereby contributing to oncogenesis.
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  • 文章类型: Journal Article
    衰老是一个渐进的、不可逆转的自然过程。随着年龄的增长,身体经历功能衰退,这些影响放大了对一系列与年龄有关的疾病的脆弱性,包括神经退行性疾病,心血管,和代谢性疾病。在衰老过程中,线粒体和内质网(ER)的形态和功能发生改变,特别是在连接这些称为线粒体相关膜(MAMs)的细胞器的结构中。MAMs作为重要的细胞内信号枢纽,在调节各种细胞事件时促进ER和线粒体之间的通讯,包括钙稳态,脂质代谢,线粒体功能,和凋亡。MAM的形成部分取决于囊泡相关膜蛋白相关蛋白B(VAPB)和蛋白酪氨酸磷酸酶相互作用蛋白51(PTPIP51)之间的相互作用。越来越多的证据已经开始阐明VAPB-PTPIP51系链在年龄相关疾病的发生和发展中的关键作用。在这项研究中,我们描述了VAPB-PTPIP51系链的复杂结构和多功能作用,并讨论了其在衰老相关疾病中的深远影响.此外,我们提供了针对VAPB-PTPIP51介导的MAMs的潜在治疗干预和药物的全面概述,从而为减轻衰老过程和治疗与年龄有关的疾病提供了一线希望。
    Aging is a gradual and irreversible natural process. With aging, the body experiences a functional decline, and the effects amplify the vulnerability to a range of age-related diseases, including neurodegenerative, cardiovascular, and metabolic diseases. Within the aging process, the morphology and function of mitochondria and the endoplasmic reticulum (ER) undergo alterations, particularly in the structure connecting these organelles known as mitochondria-associated membranes (MAMs). MAMs serve as vital intracellular signaling hubs, facilitating communication between the ER and mitochondria when regulating various cellular events, including calcium homeostasis, lipid metabolism, mitochondrial function, and apoptosis. The formation of MAMs is partly dependent on the interaction between the vesicle-associated membrane protein-associated protein-B (VAPB) and protein tyrosine phosphatase-interacting protein-51 (PTPIP51). Accumulating evidence has begun to elucidate the pivotal role of the VAPB-PTPIP51 tether in the initiation and progression of age-related diseases. In this study, we delineate the intricate structure and multifunctional role of the VAPB-PTPIP51 tether and discuss its profound implications in aging-associated diseases. Moreover, we provide a comprehensive overview of potential therapeutic interventions and pharmacological agents targeting the VAPB-PTPIP51-mediated MAMs, thereby offering a glimmer of hope in mitigating aging processes and treating age-related disorders.
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  • 文章类型: Journal Article
    背景:外泌体与肿瘤微环境(TME)之间的相互作用仍不清楚。我们研究了外泌体对肝细胞癌(HCC)中TME的影响,关注它们的mRNA表达谱。
    方法:从exoRBase获得外泌体的mRNA表达谱。来自HCC患者的RNA测序数据来自癌症基因组图谱(TCGA)和国际癌症基因组联盟(ICGC)。建立具有预后价值的外泌体mRNA相关风险评分模型。两个数据库中的患者根据中位风险评分值分为高危组和低危组,并用来验证对方。基于差异基因预后模型(DGPM)进行功能富集分析。CIBERSORT用于评估TME中免疫细胞的丰度。分析免疫检查点相关基因的表达水平与DGPM之间的相关性以及对药物敏感性的预测值。
    结果:预后外泌体mRNA相关的4基因签名(DYNC1H1,PRKDC,CCDC88A,和ADAMTS5)进行了构建和验证。预后列线图对HCC具有预后能力。该模型的基因与细胞外基质有关,细胞外基质(ECM)-受体相互作用,和PI3K-Akt信号通路。此基因的表达与TME中免疫细胞浸润呈正相关。
    结论:我们的研究结果表明,外泌体mRNA相关的风险模型可以在HCC中建立,强调分子在预后和风险分层中的功能意义。
    BACKGROUND: The interplay between exosomes and the tumor microenvironment (TME) remains unclear. We investigated the influence of exosomes on the TME in hepatocellular carcinoma (HCC), focusing on their mRNA expression profile.
    METHODS: mRNA expression profiles of exosomes were obtained from exoRBase. RNA sequencing data from HCC patients\' tumors were acquired from The Cancer Genome Atlas (TCGA) and the International Cancer Genome Consortium (ICGC). An exosome mRNA-related risk score model of prognostic value was established. The patients in the two databases were divided into high- and low-risk groups based on the median risk score value, and used to validate one another. Functional enrichment analysis was performed based on a differential gene prognosis model (DGPM). CIBERSORT was used to assess the abundance of immune cells in the TME. The correlation between the expression levels of immune checkpoint-related genes and DGPM was analyzed alongside the prediction value to drug sensitivity.
    RESULTS: A prognostic exosome mRNA-related 4-gene signature (DYNC1H1, PRKDC, CCDC88A, and ADAMTS5) was constructed and validated. A prognostic nomogram had prognostic ability for HCC. The genes for this model are involved in extracellular matrix, extracellular matrix (ECM)-receptor interaction, and the PI3K-Akt signaling pathway. Expression of genes here had a positive correlation with immune cell infiltration in the TME.
    CONCLUSIONS: Our study results demonstrate that an exosome mRNA-related risk model can be established in HCC, highlighting the functional significance of the molecules in prognosis and risk stratification.
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  • 文章类型: Journal Article
    目的:线粒体相关的内质网膜(MAMs)是细胞内连接内质网(ER)和线粒体的重要桥梁。囊泡相关膜蛋白相关蛋白B(VAPB)和蛋白酪氨酸磷酸酶相互作用蛋白51(PTPIP51)负责MAMs的形成和稳定性,与各种疾病的发病机理有关。然而,MAMs在缺血性卒中(IS)中的作用尚不清楚.我们旨在研究MAMs系链蛋白VAPB-PTPIP51在实验性脑缺血中的作用。
    方法:我们使用小鼠大脑中动脉闭塞(MCAO)模型来模拟脑缺血再灌注损伤(CIRI)。
    结果:我们观察到脑组织中VAPB-PTPIP51表达的降低。我们的研究结果表明MCAO后MAM受损,通过透射电子显微镜(TEM)观察到线粒体-ER接触(MERC)覆盖率降低和距离增加。在VAPB或PTPIP51敲低时,对MAM的损害加剧了,伴随着过度的自噬激活和增加的活性氧(ROS)的产生,导致梗死面积扩大并加剧神经功能缺损。值得注意的是,我们观察到这种损伤伴随着PI3K/AKT/mTOR通路的抑制,并通过PI3K激活剂治疗成功缓解.
    结论:我们的发现表明,IS后VAPB-PTPIP51表达的下调介导了MAMs的结构损伤。这可能通过抑制PI3K途径和激活自噬来加剧CIRI,从而为IS提供新的治疗靶点。
    Mitochondria-associated endoplasmic reticulum membranes (MAMs) serve as a crucial bridge connecting the endoplasmic reticulum (ER) and mitochondria within cells. Vesicle-associated membrane protein-associated protein B (VAPB) and protein tyrosine phosphatase interacting protein 51 (PTPIP51) are responsible for the formation and stability of MAMs, which have been implicated in the pathogenesis of various diseases. However, the role of MAMs in ischemic stroke (IS) remains unclear. We aimed to investigate the role of MAMs tethering protein VAPB-PTPIP51 in experimental cerebral ischemia.
    We simulated cerebral ischemia-reperfusion injury (CIRI) by using a mouse middle cerebral artery occlusion (MCAO) model.
    We observed a decrease in VAPB-PTPIP51 expression in the brain tissue. Our findings suggested compromised MAMs after MCAO, as a decreased mitochondria-ER contact (MERC) coverage and an increased distance were observed through the transmission electron microscope (TEM). Upon VAPB or PTPIP51 knockdown, the damage to MAMs was exacerbated, accompanied by excessive autophagy activation and increased reactive oxygen species (ROS) production, resulting in an enlarged infarct area and exacerbated neurological deficits. Notably, we observed that this damage was concomitant with the inhibition of the PI3K/AKT/mTOR pathway and was successfully mitigated by the treatment with the PI3K activator.
    Our findings suggest that the downregulation of VAPB-PTPIP51 expression after IS mediates structural damage to MAMs. This may exacerbate CIRI by inhibiting the PI3K pathway and activating autophagy, thus providing new therapeutic targets for IS.
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