UNet

UNet
  • 文章类型: Journal Article
    背景:诊断和治疗扁桃体炎对耳鼻喉科医师来说并不构成重大挑战;然而,在冠状病毒大流行期间,它会增加医疗保健专业人员的感染风险。近年来,随着人工智能(AI)的发展,其在医学成像中的应用也蓬勃发展。本研究旨在识别最佳卷积神经网络(CNN)算法,用于扁桃体炎的准确诊断和早期精确治疗。
    方法:采用具有用于自我训练的伪标签的半监督学习来训练我们的CNN,使用包括UNet在内的算法,PSPNet,FPN。包括来自485名参与者的485张咽镜图像,包括健康个体(133例),普通感冒患者(295例),和扁桃体炎患者(57例)。从485张图像中提取颜色和纹理特征进行分析。
    结果:UNet在自动准确分割口咽解剖结构方面优于PSPNet和FPN,平均Dice系数为97.74%,像素精度为98.12%,使其适合于增强扁桃体炎的诊断。正常的扁桃体通常具有更均匀和光滑的纹理,并具有粉红色,类似于周围的粘膜组织,而扁桃体炎,特别是需要抗生素的类型,显示白色或淡黄色的脓点或斑块,相比之下,表现出更多的颗粒状或块状纹理,表明炎症和组织结构的变化。经过485例的培训,我们的算法与UNet实现了93.75%的准确率,97.1%,在区分三个扁桃体组方面为91.67%,展示了优异的结果。
    结论:我们的研究强调了使用UNet进行口咽结构的全自动语义分割的潜力,这有助于后续的特征提取,机器学习,并能够对扁桃体炎进行准确的AI诊断。这项创新显示了提高扁桃体炎评估的准确性和速度的希望。
    BACKGROUND: Diagnosing and treating tonsillitis pose no significant challenge for otolaryngologists; however, it can increase the infection risk for healthcare professionals amidst the coronavirus pandemic. In recent years, with the advancement of artificial intelligence (AI), its application in medical imaging has also thrived. This research is to identify the optimal convolutional neural network (CNN) algorithm for accurate diagnosis of tonsillitis and early precision treatment.
    METHODS: Semi-supervised learning with pseudo-labels used for self-training was adopted to train our CNN, with the algorithm including UNet, PSPNet, and FPN. A total of 485 pharyngoscopic images from 485 participants were included, comprising healthy individuals (133 cases), patients with the common cold (295 cases), and patients with tonsillitis (57 cases). Both color and texture features from 485 images are extracted for analysis.
    RESULTS: UNet outperformed PSPNet and FPN in accurately segmenting oropharyngeal anatomy automatically, with average Dice coefficient of 97.74% and a pixel accuracy of 98.12%, making it suitable for enhancing the diagnosis of tonsillitis. The normal tonsils generally have more uniform and smooth textures and have pinkish color, similar to the surrounding mucosal tissues, while tonsillitis, particularly the antibiotic-required type, shows white or yellowish pus-filled spots or patches, and shows more granular or lumpy texture in contrast, indicating inflammation and changes in tissue structure. After training with 485 cases, our algorithm with UNet achieved accuracy rates of 93.75%, 97.1%, and 91.67% in differentiating the three tonsil groups, demonstrating excellent results.
    CONCLUSIONS: Our research highlights the potential of using UNet for fully automated semantic segmentation of oropharyngeal structures, which aids in subsequent feature extraction, machine learning, and enables accurate AI diagnosis of tonsillitis. This innovation shows promise for enhancing both the accuracy and speed of tonsillitis assessments.
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  • 文章类型: Journal Article
    腹部有多个重要器官,与各种疾病有关,对人类健康构成重大风险。及早发现腹部器官状况,可以及时进行干预和治疗,防止患者健康恶化。分割腹部器官有助于医生更准确地诊断器官病变。然而,腹部器官的解剖结构相对复杂,器官相互重叠,共享类似的功能,从而为细分任务提出了挑战。在真实的医疗场景中,模型必须展示实时和低延迟功能,需要在最小化参数数量的同时提高分割精度。研究人员开发了各种腹部器官分割方法,从卷积神经网络(CNN)到变形金刚。然而,这些方法在准确识别器官分割边界时经常遇到困难。MetaFormer抽象了变形金刚的框架,不包括多头自我关注,为解决计算机视觉问题和克服视觉变形金刚和CNN骨干网络的局限性提供了新的视角。为了进一步提高分割效果,我们提出了一个U形网络,集成SEFormer和深度级联上采样(dCUP)作为编码器和解码器,分别,进入UNet结构,名为SEF-UNet。SEFormer将挤压和激励模块与深度可分离卷积相结合,实例化MetaFormer框架,增强局部细节和纹理信息的捕获,从而提高边缘分割精度。dCUP在上采样过程中进一步集成了浅层和深层信息层。我们的模型显着提高了分割精度,同时减少了参数计数,并在分割彼此重叠的器官边缘方面表现出卓越的性能,从而在真实的医疗场景中提供潜在的部署。
    The abdomen houses multiple vital organs, which are associated with various diseases posing significant risks to human health. Early detection of abdominal organ conditions allows for timely intervention and treatment, preventing deterioration of patients\' health. Segmenting abdominal organs aids physicians in more accurately diagnosing organ lesions. However, the anatomical structures of abdominal organs are relatively complex, with organs overlapping each other, sharing similar features, thereby presenting challenges for segmentation tasks. In real medical scenarios, models must demonstrate real-time and low-latency features, necessitating an improvement in segmentation accuracy while minimizing the number of parameters. Researchers have developed various methods for abdominal organ segmentation, ranging from convolutional neural networks (CNNs) to Transformers. However, these methods often encounter difficulties in accurately identifying organ segmentation boundaries. MetaFormer abstracts the framework of Transformers, excluding the multi-head Self-Attention, offering a new perspective for solving computer vision problems and overcoming the limitations of Vision Transformers and CNN backbone networks. To further enhance segmentation effectiveness, we propose a U-shaped network, integrating SEFormer and depthwise cascaded upsampling (dCUP) as the encoder and decoder, respectively, into the UNet structure, named SEF-UNet. SEFormer combines Squeeze-and-Excitation modules with depthwise separable convolutions, instantiating the MetaFormer framework, enhancing the capture of local details and texture information, thereby improving edge segmentation accuracy. dCUP further integrates shallow and deep information layers during the upsampling process. Our model significantly improves segmentation accuracy while reducing the parameter count and exhibits superior performance in segmenting organ edges that overlap each other, thereby offering potential deployment in real medical scenarios.
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  • 文章类型: Journal Article
    最近,基于编码器-解码器架构的ViT和CNN已经成为医学图像分割领域的主导模型。然而,它们中的每一个都有一些不足:(1)考虑到较长距离,CNN很难捕获两个位置之间的相互作用。(2)ViT无法获取局部上下文信息的交互,计算复杂度高。为了优化上述不足,我们提出了一种新的医学图像分割网络,称为FCSU-Net。FCSU-Net使用提出的多尺度特征块的协作融合,使网络获得更丰富,更准确的特征。此外,FCSU-Net通过FFF(全尺度特征融合)结构融合全尺度特征信息,而不是简单的跳过连接,并通过CS(Cross-dimensionSelf-attention)机制在多个维度上建立长程依赖关系。同时,每个维度都是相辅相成的。此外,CS机制具有卷积捕获局部上下文权重的优点。最后,FCSU-Net在多个数据集上进行了验证,结果表明,FCSU-Net不仅参数数量相对较少,而且还具有领先的细分性能。
    Recently, ViT and CNNs based on encoder-decoder architecture have become the dominant model in the field of medical image segmentation. However, there are some deficiencies for each of them: (1) It is difficult for CNNs to capture the interaction between two locations with consideration of the longer distance. (2) ViT cannot acquire the interaction of local context information and carries high computational complexity. To optimize the above deficiencies, we propose a new network for medical image segmentation, which is called FCSU-Net. FCSU-Net uses the proposed collaborative fusion of multi-scale feature block that enables the network to obtain more abundant and more accurate features. In addition, FCSU-Net fuses full-scale feature information through the FFF (Full-scale Feature Fusion) structure instead of simple skip connections, and establishes long-range dependencies on multiple dimensions through the CS (Cross-dimension Self-attention) mechanism. Meantime, every dimension is complementary to each other. Also, CS mechanism has the advantage of convolutions capturing local contextual weights. Finally, FCSU-Net is validated on several datasets, and the results show that FCSU-Net not only has a relatively small number of parameters, but also has a leading segmentation performance.
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  • 文章类型: Journal Article
    背景:本研究旨在开发一种称为双路径双注意转换器(DDA-Transformer)的新型深度卷积神经网络,旨在实现精确,快速的膝关节CT图像分割,并在机器人辅助的全膝关节置换术(TKA)中进行验证。
    方法:股骨,胫骨,髌骨,和腓骨分割的性能和速度进行了评估,组件尺寸的准确性,在临床上验证了使用该深度学习网络构建的机器人辅助TKA系统的骨切除和对齐.
    结果:总体而言,DDA-Transformer在Dice系数方面优于其他六个网络,在联合上相交,平均表面距离,和Hausdorff距离.DDA-Transformer的分割速度明显快于nnUnet,TransUnet和3D-Unet(p<0.01)。此外,机器人辅助TKA系统在手术准确性方面优于手动组.
    结论:DDA-Transformer在膝关节分割中显示出显着提高的准确性和鲁棒性,这种方便稳定的膝关节CT图像分割网络显著提高了TKA程序的准确性。
    BACKGROUND: This study aimed to develop a novel deep convolutional neural network called Dual-path Double Attention Transformer (DDA-Transformer) designed to achieve precise and fast knee joint CT image segmentation and to validate it in robotic-assisted total knee arthroplasty (TKA).
    METHODS: The femoral, tibial, patellar, and fibular segmentation performance and speed were evaluated and the accuracy of component sizing, bone resection and alignment of the robotic-assisted TKA system constructed using this deep learning network was clinically validated.
    RESULTS: Overall, DDA-Transformer outperformed six other networks in terms of the Dice coefficient, intersection over union, average surface distance, and Hausdorff distance. DDA-Transformer exhibited significantly faster segmentation speeds than nnUnet, TransUnet and 3D-Unet (p < 0.01). Furthermore, the robotic-assisted TKA system outperforms the manual group in surgical accuracy.
    CONCLUSIONS: DDA-Transformer exhibited significantly improved accuracy and robustness in knee joint segmentation, and this convenient and stable knee joint CT image segmentation network significantly improved the accuracy of the TKA procedure.
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  • 文章类型: Journal Article
    ECG通过记录心脏活动来帮助诊断心脏病。在长期测量中,由于传感器分离而发生数据丢失。因此,心电信号缺失数据的重建研究至关重要。然而,ECG需要用户参与并且不能用于连续心脏监测。PPG信号的连续监测相反是低成本的并且易于执行。在这项研究中,提出了一种深度神经网络模型,用于使用PPG数据重建丢失的ECG信号。该模型是以WNet架构为基础的端到端深度学习神经网络,在建立第二个模型时,添加了双向长短期记忆网络。使用来自MIMICIII匹配子集的146条记录来验证两个模型的性能。与参考文献相比,使用所提出的模型重建的ECG的皮尔逊相关系数为0.851,均方根误差(RMSE)为0.075,均方根差异百分比(PRD)为5.452,Fréchet距离(FD)为0.302。实验结果表明,从PPG重建丢失的ECG信号是可行的。
    ECG helps in diagnosing heart disease by recording heart activity. During long-term measurements, data loss occurs due to sensor detachment. Therefore, research into the reconstruction of missing ECG data is essential. However, ECG requires user participation and cannot be used for continuous heart monitoring. Continuous monitoring of PPG signals is conversely low-cost and easy to carry out. In this study, a deep neural network model is proposed for the reconstruction of missing ECG signals using PPG data. This model is an end-to-end deep learning neural network utilizing WNet architecture as a basis, on which a bidirectional long short-term memory network is added in establishing a second model. The performance of both models is verified using 146 records from the MIMIC III matched subset. Compared with the reference, the ECG reconstructed using the proposed model has a Pearson\'s correlation coefficient of 0.851, root mean square error (RMSE) of 0.075, percentage root mean square difference (PRD) of 5.452, and a Fréchet distance (FD) of 0.302. The experimental results demonstrate that it is feasible to reconstruct missing ECG signals from PPG.
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  • 文章类型: Journal Article
    锥形束计算机断层扫描(CBCT)广泛应用于现代牙科,牙齿分割构成了基于这些成像数据的数字工作流程的组成部分。先前的方法严重依赖于手动分割,并且在临床实践中是耗时且费力的。最近,随着计算机视觉技术的进步,学者们进行了深入的研究,提出了各种快速准确的牙齿分割方法。在这次审查中,我们回顾了该领域的55篇文章,并讨论了其有效性,优势,以及每种方法的缺点。除了简单的分类和讨论,本文旨在揭示如何通过应用和改进现有的图像分割算法来改进牙齿分割方法,以解决诸如牙齿形态不规则和边界模糊等问题。假设随着这些方法的优化,手工操作将减少,和更高的精度和鲁棒性的牙齿分割将实现。最后,我们强调了这一领域仍然存在的挑战,并为未来的方向提供了前景。
    Cone beam computed tomography (CBCT) is widely employed in modern dentistry, and tooth segmentation constitutes an integral part of the digital workflow based on these imaging data. Previous methodologies rely heavily on manual segmentation and are time-consuming and labor-intensive in clinical practice. Recently, with advancements in computer vision technology, scholars have conducted in-depth research, proposing various fast and accurate tooth segmentation methods. In this review, we review 55 articles in this field and discuss the effectiveness, advantages, and disadvantages of each approach. In addition to simple classification and discussion, this review aims to reveal how tooth segmentation methods can be improved by the application and refinement of existing image segmentation algorithms to solve problems such as irregular morphology and fuzzy boundaries of teeth. It is assumed that with the optimization of these methods, manual operation will be reduced, and greater accuracy and robustness in tooth segmentation will be achieved. Finally, we highlight the challenges that still exist in this field and provide prospects for future directions.
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  • 文章类型: Journal Article
    胶质瘤是一种常见于中枢神经系统的原发性恶性颅脑肿瘤。根据研究,术前诊断和充分了解胶质瘤的影像学特征是非常重要的。尽管如此,传统的图像分配和机器智慧的分割方法在神经胶质瘤分割中是不可接受的。该分析探讨了磁共振成像(MRI)脑肿瘤图像作为脑胶质瘤有效分割方法的潜力。
    这项研究使用了来自附属医院的200张MRI图像,并应用了2维残差块UNet(2DResUNet)。使用2×2内核大小(64内核)1步2D卷积(Conv)层从输入图像中提取特征。本研究中实现的2DDDenseUNet模型在UNet架构中引入了ResBlock机制,以及在输入阶段用于数据增强的高斯噪声层,以及用于替换传统2D卷积层的池化层。最后,验证了所提出的协议的性能及其在胶质瘤分割中的有效措施。
    5倍交叉验证评估的结果表明,尽管对Dice评分的评估结果略低,但提出的2DSesUNet和2DDenseUNet结构具有很高的灵敏度。同时,与实验中使用的其他模型相比,本文提出的DM-DA-UNet模型在各项指标上有了显著的改进,提高了模型的可靠性,为临床治疗策略的准确制定提供了参考和依据。本研究中使用的方法显示出比UNet模型更强的特征提取能力。此外,我们的发现表明,在训练过程中使用广义死亡伤害和偏见交叉熵作为损失函数有效地缓解了神经胶质瘤数据的类失衡,并有效地分割了神经胶质瘤。
    基于改进的UNet网络的方法在MRI脑肿瘤纵向分割程序中具有明显的优势。结果表明,我们开发了一个2D残差块UNet,这可以提高胶质瘤分割在临床过程中的结合。
    UNASSIGNED: Glioma is a primary malignant craniocerebral tumor commonly found in the central nervous system. According to research, preoperative diagnosis of glioma and a full understanding of its imaging features are very significant. Still, the traditional segmentation methods of image dispensation and machine wisdom are not acceptable in glioma segmentation. This analysis explores the potential of magnetic resonance imaging (MRI) brain tumor images as an effective segmentation method of glioma.
    UNASSIGNED: This study used 200 MRI images from the affiliated hospital and applied the 2-dimensional residual block UNet (2DResUNet). Features were extracted from input images using a 2×2 kernel size (64-kernel) 1-step 2D convolution (Conv) layer. The 2DDenseUNet model implemented in this study incorporates a ResBlock mechanism within the UNet architecture, as well as a Gaussian noise layer for data augmentation at the input stage, and a pooling layer for replacing the conventional 2D convolutional layers. Finally, the performance of the proposed protocol and its effective measures in glioma segmentation were verified.
    UNASSIGNED: The outcomes of the 5-fold cross-validation evaluation show that the proposed 2DResUNet and 2DDenseUNet structure has a high sensitivity despite the slightly lower evaluation result on the Dice score. At the same time, compared with other models used in the experiment, the DM-DA-UNet model proposed in this paper was significantly improved in various indicators, increasing the reliability of the model and providing a reference and basis for the accurate formulation of clinical treatment strategies. The method used in this study showed stronger feature extraction ability than the UNet model. In addition, our findings demonstrated that using generalized die harm and prejudiced cross entropy as loss functions in the training process effectively alleviated the class imbalance of glioma data and effectively segmented glioma.
    UNASSIGNED: The method based on the improved UNet network has obvious advantages in the MRI brain tumor portrait segmentation procedure. The result showed that we developed a 2D residual block UNet, which can improve the incorporation of glioma segmentation into the clinical process.
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  • 文章类型: Journal Article
    随着深度学习的发展,医学图像分割在计算机辅助诊断中成为研究热点。最近,UNet及其变体已成为最强大的医学图像分割方法。然而,这些方法存在(1)感知场不足,深度不足;(2)信道特征的计算非线性和冗余;(3)忽略特征信道之间的相互关系。这些问题导致网络分割性能差和泛化能力弱。因此,首先,我们提出了一个有效的UNet基块替换方案,双残差深度卷积(DRDAC)块,有效改善感受野和深度的不足。其次,一个新的线性模块,多尺度频域滤波器(MFDF),旨在从频域捕获全局信息。通过将深度可分离卷积与频域滤波器相结合来提取高阶多尺度关系。最后,重新设计了称为轴向选择通道注意(ASCA)的通道注意,以增强网络对功能通道相互关系进行建模的能力。Further,基于上述模块,设计了一种新颖的频域医学图像分割基线方法FDFUNet。我们对五个公开可用的医学图像数据集进行了广泛的实验,并证明了与其他最先进的基线方法相比,本方法具有更强的分割性能和泛化能力。
    With the development of deep learning, medical image segmentation in computer-aided diagnosis has become a research hotspot. Recently, UNet and its variants have become the most powerful medical image segmentation methods. However, these methods suffer from (1) insufficient sensing field and insufficient depth; (2) computational nonlinearity and redundancy of channel features; and (3) ignoring the interrelationships among feature channels. These problems lead to poor network segmentation performance and weak generalization ability. Therefore, first of all, we propose an effective replacement scheme of UNet base block, Double residual depthwise atrous convolution (DRDAC) block, to effectively improve the deficiency of receptive field and depth. Secondly, a new linear module, the Multi-scale frequency domain filter (MFDF), is designed to capture global information from the frequency domain. The high order multi-scale relationship is extracted by combining the depthwise atrous separable convolution with the frequency domain filter. Finally, a channel attention called Axial selection channel attention (ASCA) is redesigned to enhance the network\'s ability to model feature channel interrelationships. Further, we design a novel frequency domain medical image segmentation baseline method FDFUNet based on the above modules. We conduct extensive experiments on five publicly available medical image datasets and demonstrate that the present method has stronger segmentation performance as well as generalization ability compared to other state-of-the-art baseline methods.
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  • 文章类型: Journal Article
    从光学遥感图像中提取海岸线对于沿海地区管理至关重要,侵蚀监测,和智能海洋建设。然而,在捕获有关海岸线的小规模和详细信息时,近岸海洋环境的复杂性提出了挑战。此外,众多潮滩的存在,悬浮沉积物,沿海生物群落加剧了分割准确性的降低,这在中高分辨率遥感图像分割任务中尤为突出。大多数以前的相关研究,主要基于卷积神经网络(CNN)或传统的特征提取方法,在详细的像素级细化方面面临挑战,并且缺乏对所研究图像的全面理解。因此,我们提出了一种新的U形深度学习模型(STIRUnet),该模型将SwinTransformer的出色全局建模能力与使用反向残差模块的改进CNN相结合。该方法具有全局监督特征学习和逐层特征提取的能力,使用GF-HNCD和BSD遥感图像数据集进行了海陆分割实验,以验证所提出模型的性能。结果表明:1)悬浮沉积物和沿海生物群落是海岸线模糊的主要原因,和2)分钟特征的恢复(例如,狭窄的水道和微尺度的人造结构)有效地增强了边缘细节,并导致更真实的分割结果。这项研究的结果对于在复杂的海洋环境中准确提取海陆信息非常重要。他们提供了关于混合像素识别的新见解。
    Extraction of coastline from optical remote sensing images is of paramount importance for coastal zone management, erosion monitoring, and intelligent ocean construction. However, nearshore marine environment complexity presents a challenge when capturing small-scale and detailed information regarding coastlines. Furthermore, the presence of numerous tidal flats, suspended sediments, and coastal biological communities exacerbates the reduction in segmentation accuracy, which is particularly noticeable in medium-high-resolution remote sensing image segmentation tasks. Most previous related studies, based primarily on convolutional neural networks (CNNs) or traditional feature extraction methods, faced challenges in detailed pixel-level refinement and lacked comprehensive understanding of the studied images. Therefore, we proposed a new U-shaped deep learning model (STIRUnet) that combines the excellent global modeling ability of SwinTransformer with an improved CNN using an inverted residual module. The proposed method has the capability of global supervised feature learning and layer-by-layer feature extraction, and we conducted sea-land segmentation experiments using GF-HNCD and BSD remote sensing image datasets to validate the performance of the proposed model. The results indicate the following: 1) suspended sediments and coastal biological communities are major contributors to coastline blurring, and 2) the recovery of minute features (e.g., narrow watercourses and microscale artificial structures) effectively enhances edge details and leads to more realistic segmentation outcomes. The findings of this study are highly important in relation of accurate extraction of sea-land information in complex marine environments, and they offer novel insights regarding mixed-pixel identification.
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  • 文章类型: Journal Article
    基于SwinTransformer的各种分割网络已在医疗分割任务中显示出希望。尽管如此,精度较低和训练收敛较慢等挑战一直存在。为了解决这些问题,我们介绍了一种新颖的方法,结合了Swin变压器和可变形变压器,以提高整体模型性能。我们利用SwinTransformer的窗口注意机制来捕获局部特征信息,并使用可变形Transformer动态调整采样位置,加速模型收敛并使其与对象形状和大小更紧密地对齐。通过合并两个变压器模块并合并额外的跳过连接,以最大程度地减少信息丢失,我们提出的模型擅长快速准确地分割CT或X线肺部图像.实验结果表明,展示了我们模型的非凡能力。它超越了独立的SwinTransformer的SwinUnet的性能,并在相同条件下更快地收敛,在COVID-19CT扫描病变分割数据集和胸部X射线掩模和标签数据集上,准确率分别提高了0.7%(88.18%)和2.7%(98.01%),分别。这一进步有可能帮助医生进行早期诊断和治疗决策。
    Various segmentation networks based on Swin Transformer have shown promise in medical segmentation tasks. Nonetheless, challenges such as lower accuracy and slower training convergence have persisted. To tackle these issues, we introduce a novel approach that combines the Swin Transformer and Deformable Transformer to enhance overall model performance. We leverage the Swin Transformer\'s window attention mechanism to capture local feature information and employ the Deformable Transformer to adjust sampling positions dynamically, accelerating model convergence and aligning it more closely with object shapes and sizes. By amalgamating both Transformer modules and incorporating additional skip connections to minimize information loss, our proposed model excels at rapidly and accurately segmenting CT or X-ray lung images. Experimental results demonstrate the remarkable, showcasing the significant prowess of our model. It surpasses the performance of the standalone Swin Transformer\'s Swin Unet and converges more rapidly under identical conditions, yielding accuracy improvements of 0.7% (resulting in 88.18%) and 2.7% (resulting in 98.01%) on the COVID-19 CT scan lesion segmentation dataset and Chest X-ray Masks and Labels dataset, respectively. This advancement has the potential to aid medical practitioners in early diagnosis and treatment decision-making.
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