Reporter gene assay

报告基因测定
  • 文章类型: Journal Article
    目的:聚集的证据强调了先天性心脏病(CHD)的强大遗传基础。这里选择BMP4作为人类CHD的主要候选基因,主要是因为BMP4在胚胎心脏中充分表达,而在小鼠中敲除Bmp4导致胚胎死亡,主要来自多种心血管发育畸形。这项回顾性研究的目的是发现人类CHD潜在的新型BMP4突变并探索其功能影响。
    方法:对212名冠心病患者和236名无关的非冠心病个体以及从先证者获得的携带发现的BMP4突变的家庭成员进行了BMP4测序检查。通过使用双荧光素酶分析系统测量发现的CHD引起的突变对BMP4诱导的NKX2-5和TBX20表达的影响。
    结果:一个新的杂合BMP4突变,NM_001202.6:c.318T>G;p.(Tyr106*),在患有家族性CHD的女性先证者中发现。对突变携带者亲属的遗传研究表明,在系谱中,截断突变与CHD共分离。236名无关的非CHD对照者不存在无义突变。定量生物学测量显示,Tyr106*-突变体BMP4未能诱导NKX2-5和TBX20的表达,这两个基因在CHD中表达丢失。
    结论:目前的研究结果表明BMP4是人类冠心病易感的新基因,允许改善产前遗传咨询以及CHD患者的个性化治疗。
    OBJECTIVE: Aggregating evidence highlights the strong genetic basis underpinning congenital heart disease (CHD). Here BMP4 was chosen as a prime candidate gene causative of human CHD predominantly because BMP4 was amply expressed in the embryonic hearts and knockout of Bmp4 in mice led to embryonic demise mainly from multiple cardiovascular developmental malformations. The aim of this retrospective investigation was to discover a novel BMP4 mutation underlying human CHD and explore its functional impact.
    METHODS: A sequencing examination of BMP4 was implemented in 212 index patients suffering from CHD and 236 unrelated non-CHD individuals as well as the family members available from the proband carrying a discovered BMP4 mutation. The impacts of the discovered CHD-causing mutation on the expression of NKX2-5 and TBX20 induced by BMP4 were measured by employing a dual-luciferase analysis system.
    RESULTS: A new heterozygous BMP4 mutation, NM_001202.6:c.318T>G;p.(Tyr106*), was found in a female proband affected with familial CHD. Genetic research of the mutation carrier\'s relatives unveiled that the truncating mutation was in co-segregation with CHD in the pedigree. The nonsense mutation was absent from 236 unrelated non-CHD control persons. Quantitative biologic measurement revealed that Tyr106*-mutant BMP4 failed to induce the expression of NKX2-5 and TBX20, two genes whose expression is lost in CHD.
    CONCLUSIONS: The current findings indicate BMP4 as a new gene predisposing to human CHD, allowing for improved prenatal genetic counseling along with personalized treatment of CHD patients.
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  • 文章类型: Journal Article
    蛋白水解靶向嵌合体(PROTAC)是近年来越来越多地应用于新药开发的一种蛋白质降解技术。Akt是一种经典的丝氨酸/苏氨酸激酶,其在激酶之外的作用近年来逐渐受到关注,使其成为PROTACs靶向的蛋白质之一。目前,有许多方法用于评估细胞内蛋白质降解,但是每个人都有自己的优点或缺点。本研究旨在探讨使用NanoLuc荧光素酶方法评估PROTACs(MS21和MS170)在细胞中降解pan-Akt蛋白的可行性。在对各种细胞中的这种方法与经典的蛋白质印迹测定法进行了彻底的比较后,以及测试多个批次之间实验的稳定性,我们发现NanoLuc荧光素酶是一种高度精确的,稳定,低成本且易于操作的方法,用于通过短周期时间和高细胞可扩展性的PROTACs评估细胞内泛Akt降解。鉴于此方法的众多优点,假设它可以扩展到评估PROTACs更多靶蛋白的降解。总之,NanoLuc荧光素酶是PROTAC化合物早期蛋白质降解筛选的合适方法。
    Proteolysis targeting chimera (PROTAC) is a protein degradation technique that has been increasingly used in the development of new drugs in recent years. Akt is a classical serine/threonine kinase, and its role outside of the kinase has gradually gained attention in recent years, making it one of the proteins targeted by PROTACs. Currently, there are many methods used for the evaluation of intracellular protein degradation, but each has its own advantages or disadvantages. This study aimed to investigate the feasibility of evaluating the degradation of pan-Akt proteins in cells by PROTACs (MS21 and MS170) using the NanoLuc luciferase method. After conducting a thorough comparison between this method and the classical western blot assay in various cells, as well as testing the stability of the experiments between multiple batches, we found that NanoLuc luciferase is a highly accurate, stable, low-cost and easy-to-operate method for the evaluation of intracellular pan-Akt degradation by PROTACs with a short cycle time and high cellular expandability. Given the numerous advantages of this method, it is hypothesized that it could be extended to evaluate the degradation of more target proteins of PROTACs. In summary, the NanoLuc luciferase is a suitable method for early protein degradation screening of PROTAC compounds.
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  • 文章类型: Journal Article
    近年来,新兴有机磷酸酯(eOPEs)的环境发生和人类暴露显着增加。间苯二酚双(二苯基)磷酸酯(RDP)是在室内灰尘中检测到的主要eOPEs之一,但是关于其毒性和健康风险的知识相当有限。在这项研究中,与传统的OPE磷酸三苯酯(TPHP)相比,我们研究了RDP的体外雌激素作用和潜在机制。我们的结果表明,RDP促进MCF-7细胞增殖,最低作用浓度为2.5μM,1.6倍的最大增强大于TPHP(1.3倍)。雌激素受体(ER)拮抗剂完全抑制了这种作用,表明ER激活是增强的原因。在荧光素酶报告基因测定中,RDP和TPHP均激活了2.5μM的ER转录活性,但RDP活性高于TPHP。竞争性荧光结合试验显示RDP与ER结合,IC10为0.26μM,比TPHP(5.6μM)低20倍。分子对接模拟表明,RDP和TPHP都在雌二醇的结合口袋与ER相互作用,虽然氢键是不同的。一起来看,RDP通过ER介导的途径比TPHP发挥更强的雌激素作用,并可能带来更多的健康风险。
    Environmental occurrence and human exposure of emerging organophosphate esters (eOPEs) have increased significantly in recent years. Resorcinol bis(diphenyl) phosphate (RDP) is one of the major eOPEs detected in indoor dust, but the knowledge on its toxicities and health risks is rather limited. In this study, we investigated the in vitro estrogenic effects and underlying mechanism of RDP in comparison with a legacy OPE triphenyl phosphate (TPHP). Our results showed that RDP promoted MCF-7 cell proliferation with the lowest effect concentration of 2.5 μM, and the maximum enhancement of 1.6 folds is greater than that of TPHP (1.3 folds). The effect was inhibited completely by an estrogen receptor (ER) antagonist, suggesting that ER activation was responsible for the enhancement. In luciferase reporter gene assays both RDP and TPHP activated ER transcriptional activity at 2.5 μM, but RDP activity was higher than TPHP. Competitive fluorescence binding assays showed that RDP bound to ER with an IC10 of 0.26 μM, which is 20 folds lower than TPHP (5.6 μM). Molecular docking simulation revealed that both RDP and TPHP interacted with ER at the binding pocket of estradiol, although the hydrogen bonds were different. Taken together, RDP exerted stronger estrogenic effects than TPHP through ER-mediated pathways and may pose more health risks.
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  • 文章类型: Journal Article
    抗CD25抗体已被批准用于肾移植,并已在移植前和移植期间由食品和药物管理局(FDA)使用。然而,没有报道的生物测定法反映了抗CD25抗体的作用机制(MOA)。这里,我们描述了基于C8166细胞系中表达内源性IL-2受体的工程化C8166-STAT5RE-Luc细胞和STAT5诱导型元件驱动的萤火虫荧光素酶的报告基因测定(RGA)的开发和验证.RGA根据人类使用药品注册技术要求协调国际会议-Q2(ICH-Q2)进行了充分验证。优化后,该测定法显示出优异的特异性,线性度准确度,精度,和鲁棒性。由于MOA相关性和优异的测定性能,RGA适用于探索关键质量属性(CQA),释放检查,抗CD25单克隆抗体的可比性和稳定性。
    Anti-CD25 antibodies have been approved for renal transplantation and has been used prior to and during transplantation by the Food and Drug Administration (FDA). However, no reported bioassays have been reflected the mechanism of action (MOA) of anti-CD25 antibodies. Here, we describe the development and validation of a reporter gene assay (RGA) based on the engineered C8166-STAT5RE-Luc cells expressing endogenous IL-2 receptors and a STAT5-inducible element-driven firefly luciferase in C8166 cell lines. The RGA was fully validated according to the International Conference on the Harmonization of Technical Requirements for the Registration of Pharmaceuticals for the Human Use-Q2 (ICH-Q2). After optimization, the assay showed excellent specificity, linearity, accuracy, precision, and robustness. Due to the MOA relatedness and the excellent assay performance, the RGA is suitable for exploring the critical quality attributes (CQAs), release inspection, comparability and stability of anti-CD25 mAbs.
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  • 文章类型: Journal Article
    效力测定是发展的关键,注册,和生物制品的质量控制。尽管以前更喜欢临床相关性,随着依赖细胞系的出现以及由于伦理问题,体内生物测定已经大大减少。然而,对于某些产品,体外细胞检测的发展是具有挑战性的,或现有的方法有局限性,如繁琐的程序或低灵敏度。对分析物具有改善的响应的遗传修饰(GM)细胞系的产生提供了科学和有希望的解决方案。基于GM细胞系的效力测定目前用于生物制品的质量控制,包括细胞因子。荷尔蒙,治疗性抗体,疫苗和基因治疗产品。在这次审查中,我们已经讨论了设计和开发基于GM细胞的效力测定的一般原则,包括细胞信号传导途径和可检测的生物效应的鉴定,响应细胞系的产生和测试系统的构成,基于目前的研究进展。此外,还讨论了一些新技术的应用以及有关GM细胞的常见问题。这篇综述中提出的研究为基于转基因细胞的新型生物制品效力测定的开发和应用提供了见解。
    Potency assays are key to the development, registration, and quality control of biological products. Although previously preferred for clinical relevance, in vivo bioassays have greatly diminished with the advent of dependent cell lines as well as due to ethical concerns. However, for some products, the development of in vitro cell-based assay is challenging, or existing method has limitations such as tedious procedure or low sensitivity. The generation of genetically modified (GM) cell line with improved response to the analyte provides a scientific and promising solution. Potency assays based on GM cell lines are currently used for the quality control of biological products including cytokines, hormones, therapeutic antibodies, vaccines and gene therapy products. In this review, we have discussed the general principles of designing and developing GM cells-based potency assays, including identification of cellular signaling pathways and detectable biological effects, generation of responsive cell lines and constitution of test systems, based on the current research progress. In addition, the applications of some novel technologies and the common concerns regarding GM cells have also been discussed. The research presented in this review provides insights for the development and application of novel GM cells-based potency assays for biological products.
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    文章类型: Journal Article
    目标:间隙连接蛋白α5(GJA5),也称为连接蛋白40(Cx40),在血管壁张力的介导中发挥关键作用,GJA5启动子中两个密切相关的多态性(-44G>A和+71A>G)与男性原发性高血压(EH)易感性增强相关。本研究旨在确定GJA5上游调控区内是否存在新的常见多态性(转录本1B),-26A>G(rs10465885),导致EH的风险增加。
    方法:对于本次调查,从中国汉族人群中招募了380名无关的EH患者和396名无关的血压正常个体作为对照,他们的GJA5基因型和血浆肾素浓度通过Sanger测序和自动化学发光免疫测定来确定,分别。通过双光报告基因分析在培养的鼠心肌细胞中探索GJA5变体的功能作用。
    结果:GJA5变体赋予EH的风险显着增加(OR:2.156;95%CL:1.661-2.797,P<0.0001),与对照组相比,EH患者的血浆肾素水平显着升高(46.3±7.2vs37.4±6.9,P<0.0001)。启动子-荧光素酶分析显示,与野生型对应物相比,携带该变异的次要等位基因的启动子的活性显着降低(165.67±16.85vs61.53±8.67,P=0.0007)。
    结论:这些发现表明,GJA5基因上游的新变体(-26A>G)使人类的EH脆弱性显着增加,提示EH的精确预防和治疗的潜在临床意义。
    OBJECTIVE: Gap junction protein alpha 5 (GJA5), also termed connexin 40 (Cx40), exerts a pivotal role in the mediation of vascular wall tone and two closely-linked polymorphisms in the GJA5 promoter (-44G>A and +71A>G) have been associated with enhanced susceptibility to essential hypertension (EH) in men. The present investigation aimed to ascertain whether a novel common polymorphism within the upstream regulatory region of GJA5 (transcript 1B), -26A>G (rs10465885), confers an increased risk of EH.
    METHODS: For this investigation, 380 unrelated patients with EH and 396 unrelated normotensive individuals employed as control persons were enrolled from the Chinese Han-ethnicity population, and their GJA5 genotypes and plasma renin concentrations were determined by Sanger sequencing and an automated chemiluminescent immunoassay, respectively. The functional effect of the GJA5 variant was explored in cultured murine cardiomyocytes by dual-light reporter gene analysis.
    RESULTS: The GJA5 variant conferred a significantly increased risk for EH (OR: 2.156; 95% CL: 1.661-2.797, P < 0.0001), and significantly increased plasma renin levels were measured in patients with EH in comparison with control individuals (46.3±7.2 vs 37.4±6.9, P < 0.0001). A promoter-luciferase analysis revealed significantly diminished activity of the promoter harboring the minor allele for this variation in comparison with its wild-type counterpart (165.67±16.85 vs 61.53±8.67, P = 0.0007).
    CONCLUSIONS: These findings indicate that the novel variant upstream of the GJA5 gene (-26A>G) confers a significantly increased vulnerability of EH in humans, suggesting potential clinical implications for precisive prophylaxis and treatment of EH.
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  • 文章类型: Journal Article
    液晶单体(LCMs)是一类广泛用于全球液晶显示(LCD)行业的人工成分。作为液晶显示器的主要组成部分以及电子垃圾拆解的最终产品,LCM关于其环境发生和生化后果的研究兴趣越来越大。许多研究已经分析了多种环境矩阵中的LCM,然而,有限的研究已经调查了暴露于它们的毒性作用。在这项研究中,我们将计算机模拟和体外试验验证与组学整合分析相结合,首次实现了LCM的全面毒性阐明和系统机制解释。简而言之,高通量虚拟筛选和报告基因分析显示,过氧化物酶体增殖物激活受体γ(PPARγ)被某些LCM显著拮抗。此外,LCM在HK2细胞中诱导整体代谢组和转录组失调。值得注意的是,脂肪酸β-氧化明显失调,这可能是通过多种途径介导的(IL-17,TNF,和NF-kB),而AMPK的激活和配体依赖性PPARγ拮抗作用可能起特别重要的作用。这项研究说明了LCM作为一种潜在的PPARγ拮抗剂,并探索了其在反式组学水平上的毒理学作用模式。在未来的化学品风险评估中提供了有见地的概述。
    Liquid crystal monomers (LCMs) are a large family of artificial ingredients that have been widely used in global liquid crystal display (LCD) industries. As a major constituent in LCDs as well as the end products of e-waste dismantling, LCMs are of growing research interest with regard to their environmental occurrences and biochemical consequences. Many studies have analyzed LCMs in multiple environmental matrices, yet limited research has investigated the toxic effects upon exposure to them. In this study, we combined in silico simulation and in vitro assay validation along with omics integration analysis to achieve a comprehensive toxicity elucidation as well as a systematic mechanism interpretation of LCMs for the first time. Briefly, the high-throughput virtual screen and reporter gene assay revealed that peroxisome proliferator-activated receptor gamma (PPARγ) was significantly antagonized by certain LCMs. Besides, LCMs induced global metabolome and transcriptome dysregulation in HK2 cells. Notably, fatty acid β-oxidation was conspicuously dysregulated, which might be mediated through multiple pathways (IL-17, TNF, and NF-kB), whereas the activation of AMPK and ligand-dependent PPARγ antagonism may play particularly important parts. This study illustrated LCMs as a potential PPARγ antagonist and explored their toxicological mode of action on the trans-omics level, which provided an insightful overview in future chemical risk assessment.
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  • 文章类型: Journal Article
    扩张型心肌病(DCM),伴有收缩功能障碍的左心室或双心室扩张的特征,是最常见的心肌病,以及心力衰竭和心脏猝死的主要原因。聚集的证据突出了DCM的潜在遗传基础,超过100个基因的突变与DCM有因果关系。然而,由于明显的遗传异质性,在大多数情况下,支撑DCM的遗传缺陷仍然不清楚。因此,这项研究旨在确定DCM的新遗传决定因素。在这次调查中,在一个患有DCM的家庭中进行了全外显子组测序和生物信息学分析,和VEZF1基因中的新杂合突变(编码对心血管发育和结构重塑至关重要的含锌指的转录因子),NM_007146.3:c.490A>T;p.(Lys164*),已确定。无义突变通过Sanger测序进行验证,并在具有完全外显率的家族中与常染色体显性DCM分离。在另一个由200名无关的DCM患者组成的队列中既没有检测到该突变,也没有在400名无关的健康个体中观察到,也没有在单核苷酸多态性数据库中检索到该突变。人类基因突变数据库和基因组聚集数据库。通过利用双荧光素酶报告基因测定系统进行的生物学分析表明,突变体VEZF1蛋白未能反式激活MYH7和ET1的启动子,这两个基因与DCM相关。研究结果表明VEZF1是负责DCM的新基因,这为DCM的分子发病机制提供了新的见解,暗示对DCM患者的个性化精准医疗管理的潜在影响。
    Dilated cardiomyopathy (DCM), characteristic of left ventricular or biventricular dilation with systolic dysfunction, is the most common form of cardiomyopathy, and a leading cause of heart failure and sudden cardiac death. Aggregating evidence highlights the underlying genetic basis of DCM, and mutations in over 100 genes have been causally linked to DCM. Nevertheless, due to pronounced genetic heterogeneity, the genetic defects underpinning DCM in most cases remain obscure. Hence, this study was sought to identify novel genetic determinants of DCM. In this investigation, whole-exome sequencing and bioinformatics analyses were conducted in a family suffering from DCM, and a novel heterozygous mutation in the VEZF1 gene (coding for a zinc finger-containing transcription factor critical for cardiovascular development and structural remodeling), NM_007146.3: c.490A > T; p.(Lys164*), was identified. The nonsense mutation was validated by Sanger sequencing and segregated with autosome-dominant DCM in the family with complete penetrance. The mutation was neither detected in another cohort of 200 unrelated DCM patients nor observed in 400 unrelated healthy individuals nor retrieved in the Single Nucleotide Polymorphism database, the Human Gene Mutation Database and the Genome Aggregation Database. Biological analyses by utilizing a dual-luciferase reporter assay system revealed that the mutant VEZF1 protein failed to transactivate the promoters of MYH7 and ET1, two genes that have been associated with DCM. The findings indicate VEZF1 as a new gene responsible for DCM, which provides novel insight into the molecular pathogenesis of DCM, implying potential implications for personalized precisive medical management of the patients affected with DCM.
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  • 文章类型: Journal Article
    先天性心脏病(CHD)是人类最常见的发育畸形,并在全球范围内造成大量发病率和死亡率。不断积累的调查强调了CHD的强大遗传基础,>100个基因的致病变异与冠心病有关。然而,在大多数情况下,支撑CHD的可遗传缺陷仍然难以捉摸,主要是因为明显的遗传异质性。在这次调查中,我们招募了一个4代CHD患者家庭,并对其进行了临床调查.通过全外显子组测序和Sanger测序在选定的家族成员,SMAD4基因的杂合变异(编码心血管形态发生所必需的转录因子),NM_005359.6:c.285T>A;p.(Tyr95*),在整个家庭中被鉴定为与常染色体显性CHD共分离。在用作对照受试者的460名无关的非CHD志愿者中未观察到截断变化。通过双报告基因分析的功能探索表明,Tyr95*-突变体SMAD4失去了其两个关键下游靶基因NKX2.5和ID2的反式激活,这两个基因都与CHD有关。此外,该变异消除了SMAD4和GATA4之间的协同转录激活,GATA4是另一个参与CHD的转录因子。这些数据强烈表明SMAD4可能与CHD相关,并进一步阐明了CHD的分子发病机制。暗示对冠心病患者的产前精确预防和预后风险分层的潜在影响。
    Congenital heart disease (CHD) represents the most frequent developmental deformity in human beings and accounts for substantial morbidity and mortality worldwide. Accumulating investigations underscore the strong inherited basis of CHD, and pathogenic variations in >100 genes have been related to CHD. Nevertheless, the heritable defects underpinning CHD remain elusive in most cases, mainly because of the pronounced genetic heterogeneity. In this investigation, a four-generation family with CHD was recruited and clinically investigated. Via whole-exome sequencing and Sanger sequencing assays in selected family members, a heterozygous variation in the SMAD4 gene (coding for a transcription factor essential for cardiovascular morphogenesis), NM_005359.6: c.285T > A; p.(Tyr95*), was identified to be in co-segregation with autosomal-dominant CHD in the entire family. The truncating variation was not observed in 460 unrelated non-CHD volunteers employed as control subjects. Functional exploration by dual-reporter gene analysis demonstrated that Tyr95*-mutant SMAD4 lost transactivation of its two key downstream target genes NKX2.5 and ID2, which were both implicated with CHD. Additionally, the variation nullified the synergistic transcriptional activation between SMAD4 and GATA4, another transcription factor involved in CHD. These data strongly indicate SMAD4 may be associated with CHD and shed more light on the molecular pathogenesis underlying CHD, implying potential implications for antenatal precise prevention and prognostic risk stratification of the patients affected with CHD.
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  • 文章类型: Journal Article
    肿瘤抑制蛋白P53通过介导其靶基因的转录表达诱导周期阻滞和凋亡。引起构象异常的突变和促进降解的翻译后修饰是导致肿瘤细胞P53功能丧失的主要原因。可以科学反映生物学功能的报告基因测定可以帮助发现恢复P53功能的机制和治疗策略。在这项工作的报告基因系统中,使用野生型P53的四环素诱导型表达来提供完全活化的状态作为用于生物学功能的客观测量的100%活性参考。通过RT-qPCR证实,细胞活力测定,免疫荧光,Westernblot分析表明,上述报道基因系统能正确反映野生型和突变体生物活性的差异。之后,该系统初步用于相关机理研究和化合物活性评价。通过四环素诱导共表达野生型P53和突变型P53的精确比例,观察到典型转录反应元件(TREs)对显性失活P53突变效应的反应模式并不完全相同。与相对多溶剂对照相比,相对于野生型P53的100%活性参考的活性百分比可以更好地反映所谓的P53突变体再激活因子的实际影响。同样,相对于100%活动参考,能客观反映P53抑制剂所引起的生物学效应,比如MDM2。总之,本研究为相关基础研究和药物开发提供了100%活性参考和可靠的计算模型。
    Tumor suppressor protein P53 induces cycle arrest and apoptosis by mediating the transcriptional expression of its target genes. Mutations causing conformational abnormalities and post-translational modifications that promote degradation are the main reasons for the loss of P53 function in tumor cells. Reporter gene assays that can scientifically reflect the biological function can help discover the mechanism and therapeutic strategies that restore P53 function. In the reporter gene system of this work, tetracycline-inducible expression of wild-type P53 was used to provide a fully activated state as a 100% activity reference for the objective measurement of biological function. It was confirmed by RT-qPCR, cell viability assay, immunofluorescence, and Western blot analysis that the above-mentioned reporter gene system could correctly reflect the differences in biological activity between the wild-type and mutants. After that, the system was tentatively used for related mechanism research and compound activity evaluation. Through the tetracycline-induced co-expression of wild-type P53 and mutant P53 in exact proportion, it was observed that the response modes of typical transcriptional response elements (TREs) to dominant negative P53 mutation effect were not exactly the same. Compared to the relative multiple-to-solvent control, the activity percentage relative to the 100% activity reference of wild-type P53 can better reflect the actual influence of the so-called P53 mutant reactivator. Similarly, relative to the 100% activity reference, it can objectively reflect the biological effects caused by the inhibitor of P53 negative factors, such as MDM2. In conclusion, this study provides a 100% activity reference and a reliable calculation model for relevant basic research and drug development.
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