Informatics

信息学
  • 文章类型: Journal Article
    背景:数字健康在医疗保健服务中起着至关重要的作用。许多国家的政府,包括中国,越来越多地倡导适当使用数字技术来应对重大的卫生系统挑战。将数字健康教育纳入课程对未来护士适应数字医疗系统的变化至关重要。本研究旨在评估中国在线数字健康和信息学课程对关键数字健康和信息学主题的知识和理解的影响。护理信息学能力的自我评估,护理本科生的满意度。这项研究的结果为未来数字健康教育的设计和实施提供了建议。
    方法:这项研究采用了一组,具有前评估和后评估的准实验混合方法设计。参与者在六个互动的日子里通过六个三个小时的在线课程接受了数字健康和信息学教育,之间有在线自学材料。课程前后的在线测验和焦点小组讨论旨在评估关键数字健康和信息学主题的知识和理解。此外,在课程前和课程后进行了经过验证的中文版《护理信息学能力自我评估量表》,以评估护理信息学能力自我评估.此外,所有学生都被邀请参加在线调查,并使用以表现为重点的课程评估表以及焦点小组讨论,以收集他们对学习经验和课程评估的反馈。
    结果:共有24名本科护理学生参加了该课程。所有学生都完成了本课程的所有课程,导致100%的出勤率。此外,所有学生都完成了评估前和评估后。在关键数字健康和信息学主题的知识和理解方面,知识评估测验的分数从测试前[平均测试前分数:78.33(SD6.005)]提高到课程完成后的测试后[平均测试后分数:83.17(SD4.86)](P<0.001)。此外,学生们承认,该课程提高了他们对信息学和数字健康的认识和理解,(护理)信息学在临床实践中的好处,以及医疗保健专业人员在信息学和数字健康中的作用。在护理信息学能力的自我评估方面,护理信息学态度得分显着改善(P<0.001)。此外,学生对这门课程的各个方面都非常满意,包括为未来的职业探索信息学广阔视野的机会,参与小组讨论,并分析了在临床实践中使用信息学和数字健康的案例研究。
    结论:这种在线数字健康和信息学教育有效地提高了本科护理学生对关键数字健康和信息学主题的知识和理解,护理信息学态度在护理信息学能力自我评估中具有较高的满意度。为了确保护理学生未来的数字健康和信息学教育与临床环境中的技术进步相一致,有必要促进医学院培训和临床实践之间的合作。这种合作应涉及使用临床实例来说明先进的数字健康应用,并包括在临床环境中使用数字健康技术的实践练习。
    BACKGROUND: Digital health plays a vital role in healthcare services. Governments in many countries, including China, are increasingly advocating for the appropriate use of digital technologies to address significant health system challenges. It is crucial to incorporate digital health education into the curriculum for future nurses to adapt to the changes in the digital medical system. This study aimed to evaluate the impact of an online Digital Health and Informatics Course in China on the knowledge and comprehension of key digital health and informatics topics, self-assessment of nursing informatics competencies, and satisfaction among undergraduate nursing students. The findings of this study provide recommendations for the design and implementation of future digital health education.
    METHODS: This study employed a one-group, quasi-experimental mixed-methods design with pre- and post-assessments. The participants received digital health and informatics education through six three-hour online sessions in six interactive days, with online self-learning materials in between. An online quiz and focus group discussions pre- and post the course were designed to evaluate the knowledge and comprehension of key digital health and informatics topics. Also, a validated Chinese version of the Self-assessment of Nursing Informatics Competencies Scale was conducted pre- and post-course to assess self-assessment of nursing informatics competencies. Additionally, all students were invited to participate in an online survey with a performance-focused course evaluation form as well as focus group discussions to gather their feedback on the learning experience and their evaluations of the course.
    RESULTS: A total of 24 undergraduate nursing students were enrolled in the course. All students completed all sessions of this course, resulting in an attendance rate of 100%. Additionally, all students completed both pre- and post-assessments. In terms of the knowledge and comprehension of key digital health and informatics topics, scores of the quiz on knowledge assessment improved from the pre-test [mean pretest score: 78.33 (SD 6.005)] to the post-test [mean post-test score: 83.17 (SD 4.86)] upon completion of the course (P < 0.001). Also, students acknowledged that the course enhanced their knowledge and comprehension of informatics and digital health, the benefits of (nursing) informatics in clinical practice, and the role of health care professionals in informatics and digital health. In terms of self-assessment of nursing informatics competencies, scores on nursing informatics attitudes demonstrated significant improvement (P < 0.001). Furthermore, students reported high satisfaction with various aspects of this course, including the opportunity to explore broad horizons in informatics for future careers, engaging in group discussions, and analyzing case studies on the use of informatics and digital health in clinical practice.
    CONCLUSIONS: This Online Digital Health and Informatics education effectively improved undergraduate nursing students\' knowledge and comprehension of the key digital health and informatics topics, nursing informatics attitudes in the self-assessment of nursing informatics competency with high levels of satisfaction. In order to ensure that future education in digital health and informatics for nursing students is in line with the technological advancements in clinical settings, it is necessary to foster collaboration between medical school training and clinical practice. This collaboration should involve the use of clinical examples to illustrate advanced digital health applications and the inclusion of practical exercises on the use of digital health technology in clinical settings.
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  • 文章类型: Journal Article
    从牙锥束计算机断层扫描(CBCT)精确分割牙源性囊性病变(OCL)对于有效的牙科诊断至关重要。尽管监督学习方法在分割各种疾病方面已经显示出实际的诊断结果,它们分割涵盖不同亚类品种的OCL的能力尚未得到广泛研究。
    在这项研究中,我们提出了一种新的监督学习方法,称为OCL-Net,它结合了多尺度U-Net模型,以及经过联合监督损失训练的自动适应机制。回顾性收集了一家医院的匿名CBCT图像。为了评估我们的模型提高颌面外科医生诊断效率的能力,我们进行了一项诊断评估,包括7名临床医生在有或没有自动分段面罩辅助的情况下进行诊断.
    我们收集了300张匿名CBCT图像,这些图像被手动注释以用于分割掩模。大量实验证明了我们的OCL-Net对CBCTOCL分割的有效性,实现88.84%的整体骰子得分,IoU得分为81.23%,AUC评分为92.37%。通过我们的诊断评估,我们发现,当临床医生得到来自OCL-Net的分割标签的辅助时,他们的平均诊断准确率从53.21%提高到55.71%,而平均花费时间从101s显著减少到47s(P<0.05)。
    这些发现证明了我们的方法作为CBCT图像中OCL的鲁棒自动分割系统的潜力,而分段面罩可用于进一步提高OCLs牙科诊断效率。
    UNASSIGNED: Precise segmentation of Odontogenic Cystic Lesions (OCLs) from dental Cone-Beam Computed Tomography (CBCT) is critical for effective dental diagnosis. Although supervised learning methods have shown practical diagnostic results in segmenting various diseases, their ability to segment OCLs covering different sub-class varieties has not been extensively investigated.
    UNASSIGNED: In this study, we propose a new supervised learning method termed OCL-Net that combines a Multi-Scaled U-Net model, along with an Auto-Adapting mechanism trained with a combined supervised loss. Anonymous CBCT images were collected retrospectively from one hospital. To assess the ability of our model to improve the diagnostic efficiency of maxillofacial surgeons, we conducted a diagnostic assessment where 7 clinicians were included to perform the diagnostic process with and without the assistance of auto-segmentation masks.
    UNASSIGNED: We collected 300 anonymous CBCT images which were manually annotated for segmentation masks. Extensive experiments demonstrate the effectiveness of our OCL-Net for CBCT OCLs segmentation, achieving an overall Dice score of 88.84%, an IoU score of 81.23%, and an AUC score of 92.37%. Through our diagnostic assessment, we found that when clinicians were assisted with segmentation labels from OCL-Net, their average diagnostic accuracy increased from 53.21% to 55.71%, while the average time spent significantly decreased from 101s to 47s (P<0.05).
    UNASSIGNED: The findings demonstrate the potential of our approach as a robust auto-segmentation system on OCLs in CBCT images, while the segmented masks can be used to further improve OCLs dental diagnostic efficiency.
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  • 文章类型: Journal Article
    医源性失血是新生儿贫血的重要原因。在这项研究中,开发了一个电子表格工具来减少血液收集,为预防新生儿医源性失血提供新思路。
    基于血细胞比容,最小测试体积和死体积,一个新的工具是计算最小血液收集量和测试组合所需的容器数量。我们从厦门市妇幼保健院收集了2022年10月至2023年10月的数据进行分析和验证。
    今年,新生儿科共有16,434例患者和13,696例血浆/血清学样本.其中,有8个大于1%的测试组合,共9490个样品。根据医院手册,建议采血量为27,534毫升和9490个容器。通过对这一工具的分析,总采血量为8864.77ml,向上容器的标记数量(最接近计算的血液收集量)为10301毫升,集装箱数量为8835,下降了67.8%,分别为62.58%和6.9%。此外,如果无法提前获得血细胞比容信息,并且计算为高血细胞比容为0.8,则建议采血量为14334.3ml,向上标记的容器标记量为17340毫升,分别下降47.9%和37.02%。
    我们开发了一种辅助工具,可以以精细和个性化的方式管理新生儿血液样本收集,并可以通过参数修改在不同的实验室仪器之间应用。
    UNASSIGNED: Iatrogenic blood loss is an important cause of neonatal anemia. In this study, a spreadsheet tool was developed to reduce blood collection, providing a new idea for the prevention of iatrogenic blood loss in newborns.
    UNASSIGNED: Based on hematocrit, minimum test volume and dead volume, a new tool was to calculate the minimum blood collection volume and the number of containers required for the test portfolio. We collected data from October 2022 to October 2023 from Xiamen Maternal and Child Health Hospital for analysis and validation.
    UNASSIGNED: During this year, there were 16,434 patients and 13,696 plasma/serological samples in the neonatology department. Among them, there were 8 test combinations of greater than 1%, and 9490 samples in total. According to the hospital manual, the recommended amount of blood collection is 27,534 ml and 9490 containers. Through the analysis of this tool, total blood collection was 8864.77 ml, marked qnantity of upward containers (closest level to the calculated blood collection volume) was 10301 ml, and the amount of containers was 8835, which decreased by 67.8%, 62.58% and 6.9% respectively. Besides, if the hematocrit information cannot be obtained in advance and the high hematocrit is calculated as 0.8, the recommended amount of blood collection is 14334.3 ml, and the marked amount of the upward container markering is 17340 ml, decreasing by 47.9% and 37.02% respectively.
    UNASSIGNED: We have developed an auxiliary tool that can manage neonatal blood specimen collection in a fine and personalized way and can be applied among different laboratory instruments by parameters modification.
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  • 文章类型: Journal Article
    背景:迄今为止,关于2型糖尿病(T2D)亚型的研究都没有使用相关的人群水平数据来研究事件和流行的T2D,包含一组不同的变量,簇表征的可解释方法,或坚持既定的框架。我们旨在使用具有全国代表性的数据开发和验证2型糖尿病(T2D)的机器学习(ML)知情亚型。
    方法:在基于人群的电子健康记录(2006-2020年;临床实践研究数据链)中,≥18岁的T2D事件(n=420448),我们包括因素(n=3787),包括人口统计学,历史,考试,生物标志物和药物。使用已发布的框架,我们通过9种无监督ML方法(K-means,K-means++,K模式,K-原型,小批量,凝聚层次聚类,桦木,高斯混合模型,和共识聚类)。我们使用内部分布和可解释的人工智能(AI)技术来表征集群。我们评估了以下亚型:(1)内部效度(在数据集中;跨方法);(2)预后效度(预测5年全因死亡率,住院和新的慢性病);和(3)药物负担。
    结果:发展:我们确定了四种T2D亚型:代谢,早期发病,晚发性和心脏代谢。内部效度:预测亚型的准确性很高(F1评分>0.98)。预后有效性:5年全因死亡率,住院治疗,不同T2D亚型的新慢性病发病率和用药负担不同。与代谢亚型相比,T2D事件的5年死亡率和住院风险在晚发型亚型中最高(HR1.95,1.85-2.05和1.66,1.58-1.75),在早发型亚型中最低(1.18,1.11-1.27和0.85,0.80-0.90)。慢性疾病的发病率在晚发型亚型中最高,在早发型亚型中最低。药物:与代谢亚型相比,在调整了年龄之后,性别,和T2D前的药物,晚发型亚型(1.31,1.28-1.35)和早发型亚型(0.83,0.81-0.85)的可能性最大和最小,分别,在T2D发病后5年内服用处方药。
    结论:在迄今为止在T2D事件中使用ML的最大研究中,我们确定了四种不同的亚型,对病因有潜在的未来影响,治疗学,和风险预测。
    BACKGROUND: None of the studies of type 2 diabetes (T2D) subtyping to date have used linked population-level data for incident and prevalent T2D, incorporating a diverse set of variables, explainable methods for cluster characterization, or adhered to an established framework. We aimed to develop and validate machine learning (ML)-informed subtypes for type 2 diabetes mellitus (T2D) using nationally representative data.
    METHODS: In population-based electronic health records (2006-2020; Clinical Practice Research Datalink) in individuals ≥18 years with incident T2D (n=420 448), we included factors (n=3787), including demography, history, examination, biomarkers and medications. Using a published framework, we identified subtypes through nine unsupervised ML methods (K-means, K-means++, K-mode, K-prototype, mini-batch, agglomerative hierarchical clustering, Birch, Gaussian mixture models, and consensus clustering). We characterized clusters using intracluster distributions and explainable artificial intelligence (AI) techniques. We evaluated subtypes for (1) internal validity (within dataset; across methods); (2) prognostic validity (prediction for 5-year all-cause mortality, hospitalization and new chronic diseases); and (3) medication burden.
    RESULTS: Development: We identified four T2D subtypes: metabolic, early onset, late onset and cardiometabolic. Internal validity: Subtypes were predicted with high accuracy (F1 score >0.98). Prognostic validity: 5-year all-cause mortality, hospitalization, new chronic disease incidence and medication burden differed across T2D subtypes. Compared with the metabolic subtype, 5-year risks of mortality and hospitalization in incident T2D were highest in late-onset subtype (HR 1.95, 1.85-2.05 and 1.66, 1.58-1.75) and lowest in early-onset subtype (1.18, 1.11-1.27 and 0.85, 0.80-0.90). Incidence of chronic diseases was highest in late-onset subtype and lowest in early-onset subtype. Medications: Compared with the metabolic subtype, after adjusting for age, sex, and pre-T2D medications, late-onset subtype (1.31, 1.28-1.35) and early-onset subtype (0.83, 0.81-0.85) were most and least likely, respectively, to be prescribed medications within 5 years following T2D onset.
    CONCLUSIONS: In the largest study using ML to date in incident T2D, we identified four distinct subtypes, with potential future implications for etiology, therapeutics, and risk prediction.
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  • 文章类型: Journal Article
    背景:育龄妇女癫痫的有效治疗需要多学科团队的共同努力。然而,在这种情况下,医疗保健提供者之间的无缝知识交流存在不足。因此,必须提高信息学资源的可用性和决策支持工具的开发,以全面解决这一问题。
    方法:育龄妇女癫痫本体论(WWECA)的发展遵循既定的本体论构建原则。本体的范围和通用术语最初由开发团队建立,随后通过涉及领域专家的快速Delphi共识练习进行外部评估。其他实体和属性注释数据来自相应领域内的权威准则文件和专业术语数据库。此外,本体在指导创建在线问答系统方面发挥了关键作用,这是积极采用和评估的多元化的多学科的医疗保健提供者。
    结果:WWECA成功整合了总共609个实体,涵盖了与患有癫痫的育龄妇女的诊断和药物治疗有关的各个方面。本体在其层次结构中表现出8的最大深度。这些实体中的每一个都具有三个基本属性,即中文标签,定义,和同义词。WWECA的评估涉及来自中国10家不同医院的35名专家,在专家之间达成了良好的共识。此外,本体驱动的在线问答系统经过了由10名专家组成的小组的评估,包括神经学家,产科医生,妇科医生。该评估的平均评分为4.2,这表明该系统的实用性和有效性得到了积极的接受和认可。
    结论:我们的本体论和相关的在线问答系统具有作为从事女性癫痫(WWE)管理的医疗保健提供者的可扩展助手的潜力。在未来,这一发展框架有可能在更复杂的慢性健康状况的长期管理中得到更广泛的应用.
    BACKGROUND: The effective management of epilepsy in women of child-bearing age necessitates a concerted effort from multidisciplinary teams. Nevertheless, there exists an inadequacy in the seamless exchange of knowledge among healthcare providers within this context. Consequently, it is imperative to enhance the availability of informatics resources and the development of decision support tools to address this issue comprehensively.
    METHODS: The development of the Women with Epilepsy of Child-Bearing Age Ontology (WWECA) adhered to established ontology construction principles. The ontology\'s scope and universal terminology were initially established by the development team and subsequently subjected to external evaluation through a rapid Delphi consensus exercise involving domain experts. Additional entities and attribute annotation data were sourced from authoritative guideline documents and specialized terminology databases within the respective field. Furthermore, the ontology has played a pivotal role in steering the creation of an online question-and-answer system, which is actively employed and assessed by a diverse group of multidisciplinary healthcare providers.
    RESULTS: WWECA successfully integrated a total of 609 entities encompassing various facets related to the diagnosis and medication for women of child-bearing age afflicted with epilepsy. The ontology exhibited a maximum depth of 8 within its hierarchical structure. Each of these entities featured three fundamental attributes, namely Chinese labels, definitions, and synonyms. The evaluation of WWECA involved 35 experts from 10 different hospitals across China, resulting in a favorable consensus among the experts. Furthermore, the ontology-driven online question and answer system underwent evaluation by a panel of 10 experts, including neurologists, obstetricians, and gynecologists. This evaluation yielded an average rating of 4.2, signifying a positive reception and endorsement of the system\'s utility and effectiveness.
    CONCLUSIONS: Our ontology and the associated online question and answer system hold the potential to serve as a scalable assistant for healthcare providers engaged in the management of women with epilepsy (WWE). In the future, this developmental framework has the potential for broader application in the context of long-term management of more intricate chronic health conditions.
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  • 文章类型: Journal Article
    目的:我们的目标是找到与骨质疏松症(OP)相关的代谢相关的lncRNAs,并使用这些lncRNAs构建预测OP进展的模型。
    方法:使用GEO数据库获得基因表达谱。使用WGCNA技术和差异表达分析来鉴定缺氧相关的lncRNAs。应用Lasso回归模型选择了25个缺氧相关基因,从中创建了一个分类模型。如在验证集上所验证的,其稳健的分类性能被证实,ROC曲线下面积接近1。同时,我们构建了一个基于这些基因的ceRNA网络来揭示潜在的调控过程。使用中药系统药理学数据库和分析平台(TCMSP)数据库鉴定STZYD的生物活性化合物。蝙蝠侠被用来识别目标,我们从Malacards和DisGeNet获得了OP相关基因,然后鉴定与代谢相关基因的交叉基因。然后基于交叉基因构建药理学网络。药理学网络与ceRNA网络进一步整合,从而创建了一个包含草药活性成分的综合网络,通路,lncRNAs,miRNA,和目标。随后使用定量实时PCR(qRT-PCR)验证从OP和正常患者的外周血分离的单核细胞中的缺氧相关lncRNA的表达水平。通过蛋白质印迹测定法测定RUNX2的蛋白质水平。
    结果:CBFB,GLO1、NFKB2和PIK3CA被确定为中心治疗靶点,和ADD3-AS1,DTX2P1-UPK3BP1-PMS2P11,TTTY1B,ZNNT1和LINC00623被鉴定为核心lncRNA。
    结论:我们的工作揭示了STZYD的可能治疗机制,为OP提供潜在的治疗靶点。此外,构建OP进展代谢相关lncRNAs预测模型,为OP患者的诊断提供参考。
    OBJECTIVE: Our goal was to find metabolism-related lncRNAs that were associated with osteoporosis (OP) and construct a model for predicting OP progression using these lncRNAs.
    METHODS: The GEO database was employed to obtain gene expression profiles. The WGCNA technique and differential expression analysis were used to identify hypoxia-related lncRNAs. A Lasso regression model was applied to select 25 hypoxia-related genes, from which a classification model was created. Its robust classification performance was confirmed with an area under the ROC curve close to 1, as verified on the validation set. Concurrently, we constructed a ceRNA network based on these genes to unveil potential regulatory processes. Biologically active compounds of STZYD were identified using the Traditional Chinese Medicine System Pharmacology Database and Analysis Platform (TCMSP) database. BATMAN was used to identify its targets, and we obtained OP-related genes from Malacards and DisGeNET, followed by identifying intersection genes with metabolism-related genes. A pharmacological network was then constructed based on the intersecting genes. The pharmacological network was further integrated with the ceRNA network, resulting in the creation of a comprehensive network that encompasses herb-active components, pathways, lncRNAs, miRNAs, and targets. Expression levels of hypoxia-related lncRNAs in mononuclear cells isolated from peripheral blood of OP and normal patients were subsequently validated using quantitative real-time PCR (qRT-PCR). Protein levels of RUNX2 were determined through a western blot assay.
    RESULTS: CBFB, GLO1, NFKB2 and PIK3CA were identified as central therapeutic targets, and ADD3-AS1, DTX2P1-UPK3BP1-PMS2P11, TTTY1B, ZNNT1 and LINC00623 were identified as core lncRNAs.
    CONCLUSIONS: Our work uncovers a possible therapeutic mechanism for STZYD, providing a potential therapeutic target for OP. In addition, a prediction model of metabolism-related lncRNAs of OP progression was constructed to provide a reference for the diagnosis of OP patients.
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  • 文章类型: Journal Article
    原发性阿米巴脑膜脑炎(PAM),一种严重的致命的脑部疾病,是由寄生虫引起的,NaegleriaFowleri,也被称为“吃大脑的变形虫”。受这种寄生虫影响后,患者康复的机会非常低。已知只有5%的人在这种威胁生命的感染中幸存下来。尽管N.Fowleri会导致严重的,致命感染,没有适当的治疗方法可以预防或治愈它。在这种情况下,有必要制定一个潜在的疫苗,可以对抗牛感染。目前的研究旨在通过利用免疫信息学技术和反向疫苗学方法开发一种针对家禽N.fowleri的多表位亚单位疫苗。通过各种工具预测T细胞和B细胞表位。为了选择能够触发T细胞和B细胞介导的免疫应答的表位,表位通过筛选管道,包括毒性,抗原性,细胞因子诱导,和变应原性分析。从与接头和佐剂连接的产生的表位设计三个疫苗构建体。模型疫苗与免疫受体对接,其中疫苗-1显示最高的结合亲和力。通过正常模式分析和分子动力学模拟证实了对接复合物的结合亲和力和稳定性。免疫模拟开发了免疫图谱,和计算机克隆证实了疫苗构建体在大肠杆菌中的表达概率(E.大肠杆菌)菌株K12。这项研究通过免疫信息学和反向疫苗学方法开发一种潜在的疫苗,证明了一种创新的预防大脑吃变形虫的策略。这项研究对原发性阿米巴脑膜脑炎具有很大的预防潜力,需要进一步的研究来评估所设计疫苗的功效。
    Primary Amoebic Meningoencephalitis (PAM), a severe lethal brain disease, is caused by a parasite, Naegleria fowleri, also known as the \"brain-eating amoeba\". The chances of a patient\'s recovery after being affected by this parasite are very low. Only 5% of people are known to survive this life-threatening infection. Despite the fact that N. fowleri causes a severe, fatal infection, there is no proper treatment available to prevent or cure it. In this context, it is necessary to formulate a potential vaccine that could be able to combat N. fowleri infection. The current study aimed at developing a multi-epitope subunit vaccine against N. fowleri by utilizing immunoinformatics techniques and reverse vaccinology approaches. The T- and B-cell epitopes were predicted by various tools. In order to choose epitopes with the ability to trigger both T- and B-cell-mediated immune responses, the epitopes were put through a screening pipeline including toxicity, antigenicity, cytokine-inductivity, and allergenicity analysis. Three vaccine constructs were designed from the generated epitopes linked with linkers and adjuvants. The modeled vaccines were docked with the immune receptors, where vaccine-1 showed the highest binding affinity. Binding affinity and stability of the docked complex were confirmed through normal mode analysis and molecular dynamic simulations. Immune simulations developed the immune profile, and in silico cloning affirmed the expression probability of the vaccine construct in Escherichia coli (E. coli) strain K12. This study demonstrates an innovative preventative strategy for the brain-eating amoeba by developing a potential vaccine through immunoinformatics and reverse vaccinology approaches. This study has great preventive potential for Primary Amoebic Meningoencephalitis, and further research is required to assess the efficacy of the designed vaccine.
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  • 文章类型: Journal Article
    目的:为了鉴定关键基因,特别是STTK基因,控制头颈部鳞状细胞癌(HNSC)中肿瘤细胞对T细胞介导的杀伤的敏感性。
    方法:将HNSC和STTK基因中的差异表达基因(DEGs)重叠,得到DE-STTK基因。进行了单变量和LASSO回归分析,以鉴定作为HNSC中心的关键DE-STTK基因(即,集线器DE-STTK基因)。建立风险模型,根据hubDE-STTK基因将HNSC肿瘤样本分为高危组和低危组。通过检测表达水平进行了进一步的研究,预后值,诊断值,丰富的信号通路,与肿瘤突变负荷(TMB)的相关性,并与肿瘤免疫浸润细胞(TIIC)相关。
    结果:在HNSC和STTK基因中,共有71个基因在DEGs之间重叠。Lasso回归分析确定了9个hub基因,分别是MYF6、AATF、Aurka,CXCL9、DPM2、MYO1B、NCBP2,TNFRSF12A,TRAF1对hubDE-STTK基因-通路的网络分析显示,这9个hub基因在多个信号通路中表现出富集,包括toll样受体信号,TNF信号,NF-κB信号,细胞因子-细胞因子受体相互作用,剪接体,mRNA监测途径,核质运输,GPI-锚生物合成,以及N-聚糖生物合成。Pearson相关分析显示,9个hubDE-STTK基因与免疫细胞的相关性大部分为正相关。
    结论:9个鉴定出的hubDE-STTK基因(MYF6,AATF,Aurka,CXCL9、DPM2、MYO1B、NCBP2,TNFRSF12A,和TRAF1)推测与HNSC中肿瘤免疫的调节有关。这些基因,随着他们丰富的道路,有望成为治疗HNSC的潜在个性化免疫治疗靶点,从而为这种恶性肿瘤的治疗干预提供了新的途径。
    OBJECTIVE: To identify the pivotal genes, specifically the STTK genes, that govern the sensitivity of tumor cells to T cell-mediated killing in Head and Neck Squamous Cell Carcinoma (HNSC).
    METHODS: The differentially expressed genes (DEGs) in HNSC and STTK genes were overlapped to obtain the DE-STTK genes. Univariate and LASSO regression analyses were conducted to identify the pivotal DE-STTK genes that serve as hubs in HNSC (i.e., hub DE-STTK genes). The risk model was established to divide HNSC tumor samples into high- and low-risk groups based on the hub DE-STTK genes. Further investigations were carried out by examing the expression level, prognostic values, diagnostic values, enriched signaling pathways, correlation with tumor mutation burden (TMB), and association with tumor immune infiltration cells (TIICs).
    RESULTS: A total of 71 genes were found to be overlapped between DEGs in HNSC and STTK genes. Lasso regression analysis identified 9 hub genes which were MYF6, AATF, AURKA, CXCL9, DPM2, MYO1B, NCBP2, TNFRSF12A, and TRAF1. The network analysis of hub DE-STTK genes-pathway reveals that these 9 hub genes exhibit enrichment in multiple signaling pathways, including toll-like receptor signaling, TNF signaling, NF-kappa B signaling, cytokine-cytokine receptor interaction, spliceosome, mRNA surveillance pathway, nucleocytoplasmic transport, GPI-anchor biosynthesis, as well as N-Glycan biosynthesis. The Pearson correlation analysis showed that the majority of correlations between 9 hub DE-STTK genes and immune cells were positive.
    CONCLUSIONS: The 9 identified hub DE-STTK genes (MYF6, AATF, AURKA, CXCL9, DPM2, MYO1B, NCBP2, TNFRSF12A, and TRAF1) are presumptively implicated in the modulation of tumor immunity in HNSC. These genes, along with their enriched pathways, hold promise as potential personalized immunotherapeutic targets for the treatment of HNSC, thereby offering novel avenues for therapeutic intervention in this malignancy.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    肺动脉高压(PH)是一种综合征,其特征是肺血管系统明显重塑和肺血管阻力增加,最终导致右心衰竭甚至死亡.Zrt/Irt样蛋白8(ZIP8,一种金属离子转运蛋白,由SLC39A8编码)在微血管内皮中大量存在,并且已证明其在肺中的关键作用。然而,Zip8在PH中的作用尚不清楚。
    生物信息学分析用于鉴定PH患者和正常对照(NC)之间的SLC39A8表达模式和差异表达基因(DEGs)。基于来自生物技术基因表达综合(NCBIGEO)数据库的四个数据集(GSE24988,GSE113439,GSE117261和GSE15197)。进行基因集富集分析(GSEA)以分析针对DEGs富集的信号传导途径。在Cytoscape中通过cytoHubba分析鉴定了Hub基因。逆转录聚合酶链反应用于验证SLC39A8及其在PH(SU5416/缺氧)小鼠中相关的代谢DEGs表达。
    SLC39A8表达在PH患者中下调,该表达模式在PH(SU5416/缺氧)小鼠肺组织中得到验证。SLC39A8相关基因主要富集在代谢途径中。在这些SLC39A8相关基因中,筛选出202个SLC39A8相关的代谢基因,七个基因被鉴定为SLC39A8相关的代谢中心基因。在PH患者和对照之间分析了hub基因的表达模式,并在PH小鼠中进一步验证。最后,四个基因(Fasn,Nsdhl,Acat2和Acly)在PH小鼠中下调。然而,其他三个hub基因的表达在PH小鼠和对照组之间没有显着差异。在这四个基因中,Fasn和Acly是脂肪酸合成的关键酶,Nsdhl参与胆固醇合成,Acat2与胆固醇代谢转化有关。一起来看,这些结果为Zip8在PH中的作用提供了新的见解。
    Pulmonary hypertension (PH) is a syndrome characterized by marked remodeling of the pulmonary vasculature and increased pulmonary vascular resistance, ultimately leading to right heart failure and even death. The localization of Zrt/Irt-like Protein 8 (ZIP8, a metal ion transporter, encoded by SLC39A8) was abundantly in microvasculature endothelium and its pivotal role in the lung has been demonstrated. However, the role of Zip8 in PH remains unclear.
    Bioinformatics analysis was employed to identify SLC39A8 expression patterns and differentially expressed genes (DEGs) between PH patients and normal controls (NC), based on four datasets (GSE24988, GSE113439, GSE117261, and GSE15197) from the Biotechnology Gene Expression Omnibus (NCBI GEO) database. Gene set enrichment analysis (GSEA) was performed to analyze signaling pathways enriched for DEGs. Hub genes were identified by cytoHubba analysis in Cytoscape. Reverse transcriptase-polymerase chain reaction was used to validate SLC39A8 and its correlated metabolic DEGs expression in PH (SU5416/Hypoxia) mice.
    SLC39A8 expression was downregulated in PH patients, and this expression pattern was validated in PH (SU5416/Hypoxia) mouse lung tissue. SLC39A8-correlated genes were mainly enriched in the metabolic pathways. Within these SLC39A8-correlated genes, 202 SLC39A8-correlated metabolic genes were screened out, and seven genes were identified as SLC39A8-correlated metabolic hub genes. The expression patterns of hub genes were analyzed between PH patients and controls and further validated in PH mice. Finally, four genes (Fasn, Nsdhl, Acat2, and Acly) were downregulated in PH mice. However, there were no significant differences in the expression of the other three hub genes between PH mice and controls. Of the four genes, Fasn and Acly are key enzymes in fatty acids synthesis, Nsdhl is involved in cholesterol synthesis, and Acat2 is implicated in cholesterol metabolic transformation. Taken together, these results provide novel insight into the role of Zip8 in PH.
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