Eye Proteins

眼蛋白质类
  • 文章类型: Journal Article
    橘皮素(Tan),柑橘类黄酮,在各种人类癌症中具有很强的抗肿瘤功效。然而,Tan在食管鳞状细胞癌(ESCC)发展中的确切作用尚不清楚。进行RNA测序(RNA-seq)分析以观察Tan处理的TE-1细胞中的Tan相关基因。通过生物信息学分析预测了GLI家族锌指2(GLI2)与糖蛋白非转移性黑色素瘤蛋白B(GPNMB)启动子之间的直接关系,并通过荧光素酶报告基因和染色质免疫沉淀(ChIP)测定进行了验证。通过CCK8测定评估Tan处理后的细胞存活。通过qRT-PCR评估基因表达水平,westernblot,或免疫荧光法。通过伤口愈合和transwell测定检测细胞迁移和侵袭。使用异种移植研究检查了Tan在体内的功能。我们的数据表明Tan在体外ESCC细胞中具有抗迁移和抗侵袭功能。Tan还减少了体内的肿瘤生长。机械上,Tan降低了GLI2在ESCC细胞中的表达和转录活性。通过在位置+(1539-1550)的GPNMB启动子处经由结合位点抑制GPNMB转录,GLI2的沉默导致GPNMB表达降低。此外,Tan下调ESCC细胞中的GPNMB表达,GPNMB的再表达可逆转ESCC细胞中Tan的抗迁移和抗侵袭功能。我们的发现揭示了Tan通过抑制GLI2介导的GPNMB转录下调GPNMB在ESCC细胞中的抗迁移和抗侵袭作用。提供新的证据表明Tan可以作为抗ESCC的治疗剂。
    Tangeretin (Tan), a citrus flavonoid, possesses a strong anti-tumor efficacy in various human cancers. However, the precise role of Tan in the development of esophageal squamous cell carcinoma (ESCC) remains unclear. RNA sequencing (RNA-seq) analysis was performed to observe the Tan-related genes in Tan-treated TE-1 cells. The direct relationship between GLI family zinc finger 2 (GLI2) and the promoter of glycoprotein non-metastatic melanoma protein B (GPNMB) was predicted by bioinformatics analysis and validated by luciferase reporter and chromatin immunoprecipitation (ChIP) assays. Cell survival after Tan treatment was assessed by CCK8 assay. Gene expression levels were evaluated by a qRT-PCR, western blot, or immunofluorescence method. Cell migration and invasion were detected by wound-healing and transwell assays. The function of Tan in vivo was examined using xenograft studies. Our data indicated anti-migration and anti-invasion functions of Tan in ESCC cells in vitro. Tan also diminished tumor growth in vivo. Mechanistically, Tan diminished the expression and transcriptional activity of GLI2 in ESCC cells. Silencing of GLI2 resulted in decreased expression of GPNMB by inhibiting GPNMB transcription via the binding site at the GPNMB promoter at position +(1539-1550). Moreover, Tan down-regulated GPNMB expression in ESCC cells, and re-expression of GPNMB reversed anti-migration and anti-invasion functions of Tan in ESCC cells. Our findings uncover anti-migration and anti-invasion effects of Tan in ESCC cells by down-regulating GPNMB by suppressing GLI2-mediated GPNMB transcription, providing new evidence that Tan can function as a therapeutic agent against ESCC.
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  • 文章类型: Journal Article
    目的:小眼症是一种以眼部发育异常为特征的严重先天性眼病。这项研究的目的是详细介绍与MFRP突变相关的小眼症患者的遗传和临床特征。专注于揭示基因型-表型相关性。
    方法:纳入来自44个无亲缘关系的中国家庭的50例小眼病患者。进行全外显子组测序(WES)以分析MFRP的编码区和邻近内含子区。测量所有先证者和可用家庭成员的轴向长度(AL)。预测了我们队列中高频率突变的蛋白质结构。通过统计分析探讨基因型与表型的相关性。
    结果:在17个家族中检测到16个MFRP突变,占所有小眼症家庭的38.64%。有10个新的突变(c.427+1G>C,c.428-2A>C,c.561_575del:p。A188_E192del,c.836G>A:p。C279Y,c.1010_1021del:p。H337_E340del,c.1437C>A:p。Y479*,c.1516_1517del:p。S506Pfs*66,c.1561T>G:p。C521G,c.1616G>A:p。R539H,和c.1735C>T:p。P579S)和先前报道的MFRP突变,p.E496K和p.H337_E340del是非常频繁的,在八个家庭(47.06%)和两个家庭(11.76%)中发现,分别。七个突变(43.75%)位于C端富含半胱氨酸的卷曲相关域(CRD)(7/16,43.75%)。涉及p.E496K和p.H337_E340del突变的蛋白质预测可能导致MFRP蛋白质的不稳定。42只眼的平均AL为16.02±1.05mm,AL<16mm的眼睛中有78.36%具有p.E496K突变。有p.E496K突变的26只眼的AL比没有这种突变的16只眼的AL短(p=0.006),突出了一种新的基因型-表型相关性。
    结论:在这个最大的中国小眼病患者队列中,11个新的突变,高频率的p.E496W,CRD中的突变热点揭示了中国患者对MFRP突变谱的独特见解,表明种族差异。揭示了一种新的基因型-表型相关性,即p.E496K突变与较短的AL相关。我们的发现增强了目前对MFRP相关小眼症的认识,并为产前诊断和未来治疗提供了有价值的信息。
    OBJECTIVE: Microphthalmia is a severe congenital ocular disease featured by abnormal ocular development. The aim of this study was to detail the genetic and clinical characteristics of a large cohort of Chinese patients with microphthalmia related to MFRP variants, focusing on uncovering genotype-phenotype correlations.
    METHODS: Fifty microphthalmia patients from 44 unrelated Chinese families were recruited. Whole-exome sequencing (WES) was conducted to analyze the coding regions and adjacent intronic regions of MFRP. Axial lengths (AL) were measured for all probands and available family members. Protein structures of mutations with high frequency in our cohort were predicted. The genotype-phenotype correlations were explored by statistical analysis.
    RESULTS: Sixteen MFRP variants were detected in 17 families, accounting for 38.64 % of all microphthalmia families. There were 9 novel mutations (c.427+1G>C, c.428-2A>C, c.561_575del:p.A188_E192del, c.836G>A:p.C279Y, c.1010_1021del:p.H337_E340del:p.Y479*, c.1516_1517del:p.S506Pfs*66, c.1561T>G:p.C521G, c.1616G>A:p.R539H, and c.1735C>T:p.P579S) and six previously reported variants in MFRP, with p.E496K and p.H337_E340del being highly frequent, found in eight (47.06 %) and two families (11.76 %), respectively. Seven variants (43.75 %) were located in the C-terminal cysteine-rich frizzled-related domain (CRD) (7/16, 43.75 %). Protein prediction implicated p.E496K and p.H337_E340del mutations might lead to a destabilization of the MFRP protein. The average AL of all 42 eyes was 16.02 ± 1.05 mm, and 78.36 % of eyes with AL < 16 mm harbored p.E496K variant. Twenty-six eyes with variant variant had shorter AL than that of the other 16 eyes without this variant (p = 0.006), highlighting a novel genotype-phenotype correlation.
    CONCLUSIONS: In this largest cohort of Chinese patients with microphthalmia, the 9 novel variants, high frequency of p.E496W, and mutation hotspots in CRD reveals unique insights into the MFRP mutation spectrum among Chinese patients, indicating ethnic variability. A new genotype-phenotype correlation that p.E496K variant associated with a shorter AL is unveiled. Our findings enhance the current knowledge of MFRP-associated microphthalmia and provide valuable information for prenatal diagnosis as well as future therapy.
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  • 文章类型: Journal Article
    背景:X连锁幼年视网膜裂(XLRS)是一种由RS1基因突变引起的遗传性疾病,导致视网膜分裂和视力障碍.RS1相关视网膜变性的机制尚不完全清楚。此外,XLRS动物模型在XLRS研究中存在局限性。这里,我们使用人类诱导多能干细胞(hiPSC)衍生的视网膜类器官(ROs)来研究XLRS的疾病机制和潜在治疗方法.
    方法:从两个RS1突变体(E72K)XLRS患者的外周血单核细胞重编程的hiPSCs分化为ROs。随后,我们探讨RS1突变是否会影响RO发育,并探讨RS1基因增强治疗的有效性.
    结果:来自RS1(E72K)突变hiPSCs的RO在光感受器中表现出发育延迟,视网膜裂素(RS1)缺乏症,与对照RO相比,自发活动改变。此外,发育延迟与杆特异性前体标记(NRL)和光感受器特异性标记(RCVRN)表达降低相关.腺相关病毒(AAV)介导的RS1基因增强在光感受器未成熟阶段挽救了具有RS1(E72K)突变的RO中的杆状光感受器发育延迟。
    结论:RS1(E72K)突变导致ROs的光感受器发育延迟,RS1基因增强治疗可以部分挽救。
    BACKGROUND: X-linked juvenile retinoschisis (XLRS) is an inherited disease caused by RS1 gene mutation, which leads to retinal splitting and visual impairment. The mechanism of RS1-associated retinal degeneration is not fully understood. Besides, animal models of XLRS have limitations in the study of XLRS. Here, we used human induced pluripotent stem cell (hiPSC)-derived retinal organoids (ROs) to investigate the disease mechanisms and potential treatments for XLRS.
    METHODS: hiPSCs reprogrammed from peripheral blood mononuclear cells of two RS1 mutant (E72K) XLRS patients were differentiated into ROs. Subsequently, we explored whether RS1 mutation could affect RO development and explore the effectiveness of RS1 gene augmentation therapy.
    RESULTS: ROs derived from RS1 (E72K) mutation hiPSCs exhibited a developmental delay in the photoreceptor, retinoschisin (RS1) deficiency, and altered spontaneous activity compared with control ROs. Furthermore, the delays in development were associated with decreased expression of rod-specific precursor markers (NRL) and photoreceptor-specific markers (RCVRN). Adeno-associated virus (AAV)-mediated gene augmentation with RS1 at the photoreceptor immature stage rescued the rod photoreceptor developmental delay in ROs with the RS1 (E72K) mutation.
    CONCLUSIONS: The RS1 (E72K) mutation results in the photoreceptor development delay in ROs and can be partially rescued by the RS1 gene augmentation therapy.
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  • 文章类型: Journal Article
    面包屑蛋白(CRB)家族在维持胚胎上皮的顶端-基底极性和完整性中起着至关重要的作用。该家族在不同的动物中包含不同的同工型,并具有不同的结构,本地化,和功能特征。人CRB1或CRB2基因中的突变可导致广谱的视网膜营养不良。各种CRB相关的实验模型最近提供了对人类CRB相关视网膜病变的机械见解。从这些模型获得的知识证实了CRB在视网膜发育和维持中的重要性。因此,这些模型的完整阐明可以为人类CRB相关的视网膜病变提供极好的治疗前景.在这次审查中,我们总结了目前不同CRB家族成员的动物模型和人源模型,并描述了其视网膜表型的主要特征。
    The Crumbs protein (CRB) family plays a crucial role in maintaining the apical-basal polarity and integrity of embryonic epithelia. The family comprises different isoforms in different animals and possesses diverse structural, localization, and functional characteristics. Mutations in the human CRB1 or CRB2 gene may lead to a broad spectrum of retinal dystrophies. Various CRB-associated experimental models have recently provided mechanistic insights into human CRB-associated retinopathies. The knowledge obtained from these models corroborates the importance of CRB in retinal development and maintenance. Therefore, complete elucidation of these models can provide excellent therapeutic prospects for human CRB-associated retinopathies. In this review, we summarize the current animal models and human-derived models of different CRB family members and describe the main characteristics of their retinal phenotypes.
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  • 文章类型: Journal Article
    针灸广泛用于治疗干眼病(DED),但其在治疗视频显示终端(VDT)相关干眼方面的效果尚未见报道,针刺治疗VDT相关干眼的机制也不清楚。在我们的研究中,将泪液蛋白质组与确定预测VDT相关干眼中针刺有效性的可能机制和生物标志物进行比较.结果显示:研究结束时,针刺组(AC组)和人工泪液组(AT组)眼表疾病指数评分有显著差异,而泪膜破裂时间(TFBUT)和SchirmerI测试(SIT)在组间没有显着差异。AC组治疗前后的蛋白质组变化与B细胞相关的免疫过程有关,炎症,糖酵解,和肌动蛋白细胞骨架。此外,氨基己糖苷酶A和甘露糖结合凝集素1可以前瞻性预测针灸治疗是否有效。因此,我们认为,与人工泪液相比,针刺可以改善VDT相关干眼的临床症状。针刺治疗VDT相关干眼的机制可能与糖酵素和肌动蛋白细胞骨架重塑介导的炎症和免疫过程有关。此外,己糖胺酶A和甘露糖结合凝集素1是预测针刺治疗VDT相关干眼疗效的生物标志物。
    Acupuncture is widely used to treat dry eye disease (DED), but its effect has not been reported in treating video display terminal (VDT)-related dry eye, and the mechanism of acupuncture on VDT-related dry eye is also unknown. In our study, the tear proteome was compared with identifying possible mechanisms and biomarkers for predicting acupuncture effectiveness in VDT-related dry eye. The results showed that the ocular surface disease index scores were significantly different between the acupuncture group (AC group) and artificial tears group (AT group) at the end of the study, whereas tear film breakup time (TFBUT) and Schirmer I test (SIT) were not significantly different between the groups. Proteome changes pre- and post-treatment in the AC group were associated with B cell-related immune processes, inflammation, glycolysis, and actin cytoskeleton. Furthermore, the proteins hexosaminidase A and mannose-binding lectin 1 could prospectively predict whether acupuncture treatment was effective. Therefore, we believe that acupuncture can provide greater improvement in the clinical symptoms of VDT-related dry eye than artificial tears. The mechanism of acupuncture in VDT-related dry eye treatment may be associated with glycolysis- and actin cytoskeleton remodeling-mediated inflammatory and immune processes. Additionally, hexosaminidase A and mannose-binding lectin 1 are biomarkers for predicting the efficacy of acupuncture for VDT-related dry eye.
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  • 文章类型: Journal Article
    X连锁视网膜裂孔(XLRS)是一种单基因隐性遗传性视网膜疾病,在临床上表现为视网膜裂孔,b波振幅与a波振幅不成比例地降低。目前没有批准的治疗方法,而病原体被鉴定为视网膜裂素(RS1)。在过去的十年里,基因治疗取得了巨大的进步,并为无法治愈的遗传疾病带来了希望。临床前研究证明了hRS1基因增强疗法在小鼠模型中的治疗益处。然而,临床结果不满意,这可能归因于功能失调的组装和/或受损的靶细胞。在预设研究中,人突触素1基因启动子(hSyn)用于控制hRS1的表达,该hRS1特异性靶向视网膜神经节细胞,我们的结果证实了其特异性表达和功能组装。此外,我们的结果表明,玻璃体内单次注射rAAV2-hSyn-hRS1可导致视网膜裂孔的结构恢复,改善实验XLRS小鼠模型的视力和耐受性。简而言之,本研究不仅支持rAAV2-hSyn-hRS1载体在XLRS患者中的临床开发,但也证实了基于rAAV的基因治疗在遗传性视网膜疾病中的治疗潜力。
    X-linked retinoschisis (XLRS) is a monogenic recessive inherited retinal disease caused by defects in retinoschisin (RS1). It manifests clinically as retinal schisis cavities and a disproportionate reduction of b-wave amplitude compared with the a-wave amplitude. Currently there is no approved treatment. In the last decade, there has been major progress in the development of gene therapy for XLRS. Previous preclinical studies have demonstrated the treatment benefits of hRS1 gene augmentation therapy in mouse models. However, outcomes in clinical trials have been disappointing, and this might be attributed to dysfunctional assembly of RS1 complexes and/or the impaired targeted cells. In this study, the human synapsin 1 gene promoter (hSyn) was used to control the expression of hRS1 to specifically target retinal ganglion cells and our results confirmed the specific expression and functional assembly of the protein. Moreover, our results demonstrated that a single intravitreal injection of rAAV2-hSyn-hRS1 results in architectural restoration of retinal schisis cavities and improvement in vision in a mouse model of XLRS. In brief, this study not only supports the clinical development of the rAAV2-hSyn-hRS1 vector in XLRS patients but also confirms the therapeutic potential of rAAV-based gene therapy in inherited retinal diseases.
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  • 文章类型: Journal Article
    目的:G蛋白偶联受体143(GPR143)和含FERM结构域7(FRMD7)的突变可能在生命的前6个月导致先天性眼球震颤(CN)。我们旨在比较具有这两种基因突变的患者之间眼部振荡的差异,以及视网膜和视觉通路的功能和结构变化。
    方法:回顾性回顾了2018年1月至2023年5月期间确诊患有GPR143或FMRD7基因突变的先天性眼球震颤患者的病历。使用Eyelink1000Plus记录眼振荡的参数。使用光学相干断层扫描和多焦点视网膜电图(mERG)评估视网膜结构和功能。使用视觉诱发电位评估视觉通路和视神经投影。下一代测序技术用于鉴定CN的致病基因中的致病变异。
    结果:纳入了2018年1月至2023年5月通过分子检测证实的20例GPR143患者和21例FMRD7患者。仅在患有GPR143致病性变异的患者中检测到中央凹发育不全。mERG检查显示,与FRMD7组相比,GPR143组的反应形貌平坦。VEP显示仅在GPR143基因突变的患者中检测到双侧振幅不一致。在具有两种不同基因突变的患者之间,未发现眼部振荡的幅度和频率不同。
    结论:尽管CN患者的病因和分子机制完全不同,他们可能有类似的眼部振荡。仔细的临床检查和电生理测试将有助于进行鉴别诊断。我们新鉴定的变体将进一步扩展GPR143和FRMD7变体的谱。
    OBJECTIVE: Mutations of G protein-coupled receptor 143 (GPR143) and FERM domain containing 7 (FRMD7) may result in congenital nystagmus (CN) in the first 6 months of life. We aimed to compare the differences in ocular oscillations between patients with these two gene mutations as well as the functional and structural changes in their retinas and visual pathways.
    METHODS: Medical records were retrospectively reviewed to identify patients of congenital nystagmus with confirmed mutations in either GPR143 or FMRD7 genes from January 2018 to May 2023. The parameters of the ocular oscillations were recorded using Eyelink 1000 Plus. The retinal structure and function were evaluated using optical coherence tomography and multi-focal electroretinography (mERG). The visual pathway and optical nerve projection were evaluated using visual evoked potentials. The next-generation sequencing technique was used to identify the pathogenic variations in the disease-causing genes for CN.
    RESULTS: Twenty nystagmus patients of GPR143 and 21 patients of FMRD7 who had been confirmed by molecular testing between January 2018 and May 2023 were included. Foveal hypoplasia was detected only in patients with the GPR143 pathogenic variant. mERG examination showed a flat response topography in the GPR143 group compared to the FRMD7 group. VEP showed that bilateral amplitude inconsistency was detected only in the patients with GPR143 gene mutation. The amplitude and frequency of the ocular oscillations were not found to differ between patients with two different genetic mutations.
    CONCLUSIONS: Although the etiology and molecular mechanisms are completely different between CN patients, they may have similar ocular oscillations. A careful clinical examination and electrophysiological test will be helpful in making a differential diagnosis. Our novel identified variants will further expand the spectrum of the GPR143 and FRMD7 variants.
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  • 文章类型: Journal Article
    假性剥脱综合征(PEX)的特征是纤维性假性剥脱物质(PEXM)在眼睛中沉积,与该综合征相关的继发性青光眼具有更快和更严重的临床病程。PEX和假性剥脱性青光眼(PEXG)的发病率表现出种族聚集;然而,在亚洲人群中很少进行与PEX和PEXG相关的蛋白质组学研究。因此,我们旨在对维吾尔族白内障患者的房水(AH)进行蛋白质组学分析,患有PEX和白内障的人,以及患有PEXG和白内障的患者,以更好地了解疾病的分子机制并确定其潜在的生物标志物。为此,AH从白内障患者(n=10,对照组)收集,PEX伴白内障(n=10,PEX组),和PEXG白内障(n=10,PEXG组)在白内障超声乳化术中。使用无标记定量蛋白质组学技术结合生物信息学来鉴定和分析PEX和PEXG组的AH中的差异表达蛋白(DEP)。然后,收集独立的AH样本(每组12份),通过酶联免疫吸附试验(ELISA)验证DEP.PEX组展示了25个DEP,而PEXG组显示了44个DEP,与对照组相比。随后,我们在PEX和PEXG组中发现了三种新鉴定的蛋白质,其中FRAS1相关的细胞外基质蛋白2(FREM2)和破骨细胞相关受体(OSCAR)表现出下调,而凝血因子IX(F9)显示上调。生物信息学分析表明,细胞外基质相互作用,异常的血液衍生蛋白质,溶酶体主要参与PEX和PEXG的过程,PPI网络进一步显示F9可能是PEX和PEXG的潜在生物标志物。总之,本研究为理解PEX和PEXG中AH的蛋白质组学提供了新的信息。
    Pseudoexfoliation syndrome (PEX) is characterized by the deposition of fibrous pseudoexfoliation material (PEXM) in the eye, and secondary glaucoma associated with this syndrome has a faster and more severe clinical course. The incidence of PEX and pseudoexfoliative glaucoma (PEXG) exhibits ethnic clustering; however, few proteomic studies related to PEX and PEXG have been conducted in Asian populations. Therefore, we aimed to conduct proteomic analysis on the aqueous humor (AH) obtained from Uyghur patients with cataracts, those with PEX and cataracts, and those with PEXG and cataracts to better understand the molecular mechanisms of the disease and identify its potential biomarkers. To this end, AH was collected from patients with cataracts (n = 10, control group), PEX with cataracts (n = 10, PEX group), and PEXG with cataracts (n = 10, PEXG group) during phacoemulsification. Label-free quantitative proteomic techniques combined with bioinformatics were used to identify and analyze differentially expressed proteins (DEPs) in the AH of PEX and PEXG groups. Then, independent AH samples (n = 12, each group) were collected to validate DEPs by enzyme-linked immunosorbent assay (ELISA). The PEX group exhibited 25 DEPs, while the PEXG group showed 44 DEPs, both compared to the control group. Subsequently, we found three newly identified proteins in both PEX and PEXG groups, wherein FRAS1-related extracellular matrix protein 2 (FREM2) and osteoclast-associated receptor (OSCAR) exhibited downregulation, whereas coagulation Factor IX (F9) displayed upregulation. Bioinformatics analysis suggested that extracellular matrix interactions, abnormal blood-derived proteins, and lysosomes were mainly involved in the process of PEX and PEXG, and the PPI network further revealed F9 may serve as a potential biomarker for both PEX and PEXG. In conclusion, this study provides new information for understanding the proteomics of AH in PEX and PEXG.
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  • 文章类型: Journal Article
    背景:全球肝癌发病率排名第六,死亡率排名第三,肝细胞癌(HCC)占其90%。缺氧,糖酵解,和乳酸代谢已被发现分别调节肝癌的进展。然而,缺乏将上述三者联系起来预测HCC预后的研究。本研究旨在确定缺氧-糖酵解-乳酸相关的基因特征,以评估HCC的预后。
    方法:本研究从分子特征数据库(MSigDB)收集了510个缺氧-糖酵解-乳酸基因,然后通过分析缺氧-糖酵解-乳酸基因表达对TCGA-LIHC的HCC患者进行分类。通过LASSO-Cox分析筛选出差异表达基因(DEGs)以构建基因标签。使用单变量和多变量回归分析来评估基因标签的独立预后价值。免疫浸润分析,体细胞突变,和相关热图由“GSVA”R包进行。由“SingleR”进行的单细胞分析,\"celldex\",\"Seurat\",和“CellCha”R包揭示了签名基因如何参与缺氧/糖酵解/乳酸代谢和PPI网络识别的枢纽基因。
    结果:我们将来自TCGA-LIHC的HCC患者分为两组,并筛选出DEGs。18个基因的预后特征,包括CDCA8,CBX2,PDE6A,MED8,DYNC1LI1,PSMD1,EIF5B,GNL2,SEPHS1,CCNJL,SOCS2,LDHA,G6PD,YBX1,RTN3,ADAMTS5,CLEC3B,建立UCK2以分层HCC的风险。缺氧-糖酵解-乳酸基因标记的风险评分被进一步确定为评估HCC预后的有价值的独立因素。然后我们发现临床特征,免疫浸润,体细胞突变,相关分析在高危组和低危组之间存在差异。此外,单细胞分析表明,标记基因可以与肝细胞/成纤维细胞/浆细胞的配体受体相互作用,参与缺氧/糖酵解/乳酸代谢,PPI网络确定了该过程中的潜在枢纽基因:CDCA8,LDHA,YBX1。
    结论:我们构建的缺氧-糖酵解-乳酸相关基因标签可以为HCC提供预后价值,并为未来的HCC研究提供几个中心基因。
    BACKGROUND: Liver cancer ranks sixth in incidence and third in mortality globally and hepatocellular carcinoma (HCC) accounts for 90% of it. Hypoxia, glycolysis, and lactate metabolism have been found to regulate the progression of HCC separately. However, there is a lack of studies linking the above three to predict the prognosis of HCC. The present study aimed to identify a hypoxia-glycolysis-lactate-related gene signature for assessing the prognosis of HCC.
    METHODS: This study collected 510 hypoxia-glycolysis-lactate genes from Molecular Signatures Database (MSigDB) and then classified HCC patients from TCGA-LIHC by analyzing their hypoxia-glycolysis-lactate genes expression. Differentially expressed genes (DEGs) were screened out to construct a gene signature by LASSO-Cox analysis. Univariate and multivariate regression analyses were used to evaluate the independent prognostic value of the gene signature. Analyses of immune infiltration, somatic cell mutations, and correlation heatmap were conducted by \"GSVA\" R package. Single-cell analysis conducted by \"SingleR\", \"celldex\", \"Seurat\", and \"CellCha\" R packages revealed how signature genes participated in hypoxia/glycolysis/lactate metabolism and PPI network identified hub genes.
    RESULTS: We classified HCC patients from TCGA-LIHC into two clusters and screened out DEGs. An 18-genes prognostic signature including CDCA8, CBX2, PDE6A, MED8, DYNC1LI1, PSMD1, EIF5B, GNL2, SEPHS1, CCNJL, SOCS2, LDHA, G6PD, YBX1, RTN3, ADAMTS5, CLEC3B, and UCK2 was built to stratify the risk of HCC. The risk score of the hypoxia-glycolysis-lactate gene signature was further identified as a valuable independent factor for estimating the prognosis of HCC. Then we found that the features of clinical characteristics, immune infiltration, somatic cell mutations, and correlation analysis differed between the high-risk and low-risk groups. Furthermore, single-cell analysis indicated that the signature genes could interact with the ligand-receptors of hepatocytes/fibroblasts/plasma cells to participate in hypoxia/glycolysis/lactate metabolism and PPI network identified potential hub genes in this process: CDCA8, LDHA, YBX1.
    CONCLUSIONS: The hypoxia-glycolysis-lactate-related gene signature we built could provide prognostic value for HCC and suggest several hub genes for future HCC studies.
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  • 文章类型: Journal Article
    慢性阻塞性肺疾病(COPD)是一种慢性气道炎症性疾病,其特征在于由香烟烟雾(CS)引起的肺功能受损。DACH1表达降低在许多疾病中具有有害作用。然而,其在COPD中的作用仍未得到充分研究。本研究旨在阐明DACH1在COPD气道炎症中的作用及其机制。在COPD患者的肺组织中测量DACH1的表达。使用气道上皮特异性DACH1敲低小鼠和AAV转染的DACH1过表达小鼠来研究其在CS引起的实验性COPD中的作用和治疗靶向潜力。此外,我们发现了DACH1在香烟烟雾提取物模拟(CSE)诱导的炎症中的潜在机制。与非吸烟者和无COPD吸烟者相比,COPD患者DACH1表达降低,尤其是在气道上皮中。气道上皮特异性DACH1敲除加重CS引起的小鼠气道炎症和肺功能下降,而DACH1过表达保护小鼠免受气道炎症和肺功能下降。DACH1敲低和过表达促进和抑制CSE模拟后16HBE细胞分泌IL-6和IL-8,分别。发现核因子红系2相关因子2(NRF2)是DACH1的新型下游靶标,直接与其启动子结合。通过激活NRF2信令,DACH1诱导减少炎症。与不吸烟者相比,吸烟者和不吸烟COPD患者的DACH1水平较低。DACH1通过激活NRF2信号通路对CS诱导的炎症具有保护作用。靶向DACH1是COPD治疗的潜在可行治疗方法。
    Chronic obstructive pulmonary disease (COPD) is a chronic inflammatory disease of the airways characterized by impaired lung function induced by cigarette smoke (CS). Reduced DACH1 (dachshund homolog 1) expression has a detrimental role in numerous disorders, but its role in COPD remains understudied. This study aimed to elucidate the role and underlying mechanism of DACH1 in airway inflammation in COPD by measuring DACH1 expression in lung tissues of patients with COPD. Airway epithelium-specific DACH1-knockdown mice and adenoassociated virus-transfected DACH1-overexpressing mice were used to investigate the role of DACH1 and the potential for therapeutic targeting in experimental COPD caused by CS. Furthermore, we discovered a potential mechanism of DACH1 in inflammation induced by CS extract stimulation in vitro. Compared with nonsmokers and smokers without COPD, patients with COPD had reduced DACH1 expression, especially in the airway epithelium. Airway epithelium-specific DACH1 knockdown aggravated airway inflammation and lung function decline caused by CS in mice, whereas DACH1 overexpression protected mice from airway inflammation and lung function decline. DACH1 knockdown and overexpression promoted and inhibited IL-6 and IL-8 secretion, respectively, in 16HBE human bronchial epidermal cells after CS extract stimulation. NRF2 (nuclear factor erythroid 2-related factor 2) was discovered to be a novel downstream target of DACH1, which binds directly to its promoter. By activating NRF2 signaling, DACH1 induction reduced inflammation. DACH1 levels are lower in smokers and nonsmoking patients with COPD than in nonsmokers. DACH1 has protective effects against inflammation induced by CS by activating the NRF2 signaling pathway. Targeting DACH1 is a potentially viable therapeutic approach for COPD treatment.
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