DNA methylation biomarker

  • 文章类型: Journal Article
    开发一种非侵入性和可靠的子宫内膜恶性病变分诊试验是一个重要的目标,因为它可以帮助减少所需的侵入性诊断程序的数量并提高患者的生存率。我们旨在评估子宫内膜癌(EC)和子宫内膜非典型增生(AH)的宫颈细胞学样本中DNA甲基化水平的诊断价值。
    本研究纳入了2022年10月至2023年4月沧州市中心医院妇产科有子宫内膜活检指征的607例妇女。子宫内膜活检前收集宫颈脱落细胞进行基因甲基化。临床信息,肿瘤生物标志物,并收集经阴道超声(TVS)的子宫内膜厚度(ET)。以子宫内膜组织病理学为金标准,采用多因素非条件logistic回归分析子宫内膜恶性病变的危险因素。特别探讨了半胱氨酸双加氧酶1型(CDO1)和CUGBPElav样家族成员4(CELF4)基因甲基化作为子宫内膜恶性病变的分类策略生物标志物的作用。
    多因素logistic回归分析显示,绝经前ET≥11mm或绝经后ET≥5mm,CDO1ΔCt≤8.4或CELF4ΔCt≤8.8是AH和EC的危险因素,赔率比(ORs)(95CI)为5.03(1.83-13.82)和6.92(1.10-43.44),分别(p值<0.05)。CDO1/CELF4双基因甲基化检测对AH和EC的敏感性和特异性分别达到84.9%(95CI:75.3%-94.5%)和86.6%(95CI:83.8%-89.5%),分别。ET结合DNA甲基化检测进一步提高了特异性(94.9%,95CI:93.1%-96.8%)。
    在子宫内膜恶性病变的非侵入性检查中,宫颈细胞学DNA甲基化的准确性优于其他临床指标。DNA甲基化联合TVS可以进一步提高特异性,是疑似子宫内膜病变女性的一种有前途的生物标志物分诊策略。
    UNASSIGNED: Developing a non-invasive and reliable triage test for endometrial malignant lesions is an important goal, as it could help to reduce the number of invasive diagnostic procedures required and improve patient survival. We aimed to estimate the diagnostic value of DNA methylation levels in cervical cytological samples of endometrial cancer (EC) and endometrial atypical hyperplasia (AH).
    UNASSIGNED: A total of 607 women who had indications for endometrial biopsy in the Department of Obstetrics and Gynecology of Cangzhou Central Hospital from October 2022 to April 2023 were enrolled in this study. The cervical exfoliated cells were collected for gene methylation before endometrial biopsy. Clinical information, tumor biomarkers, and endometrial thickness (ET) of transvaginal ultrasonography (TVS) were also collected. With endometrial histopathology as the gold standard, multivariate unconditional logistic regression was applied to analyze the risk factors of endometrial malignant lesions. The role of cysteine dioxygenase type 1 (CDO1) and CUGBP Elav-like family member 4 (CELF4) gene methylation as a triage strategy biomarker in endometrial malignant lesions was specifically explored.
    UNASSIGNED: Multivariate logistic regression analysis showed that premenopausal ET ≥ 11 mm or postmenopausal ET ≥ 5 mm, CDO1 ΔCt ≤ 8.4, or CELF4 ΔCt ≤ 8.8 were the risk factors for AH and EC, with odds ratios (ORs) (95%CI) of 5.03 (1.83-13.82) and 6.92 (1.10-43.44), respectively (p-values < 0.05). The sensitivity and specificity of CDO1/CELF4 dual-gene methylation assay for AH and EC reached 84.9% (95%CI: 75.3%-94.5%) and 86.6% (95%CI: 83.8%-89.5%), respectively. ET combined with DNA methylation detection further improved the specificity to (94.9%, 95%CI: 93.1%-96.8%).
    UNASSIGNED: The accuracy of cervical cytology DNA methylation is superior to that of other clinical indicators in the non-invasive examination of endometrial malignant lesions. DNA methylation combined with TVS can further improve the specificity and is a promising biomarker triage strategy in women with suspected endometrial lesions.
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  • 文章类型: Journal Article
    目前,DNA甲基化(DNAm)生物标志物在环境健康风险评估(EHRA)中的应用由于它们之间不明确的定量关系而更具挑战性。我们旨在探讨FAM50B和PTCHD3在信号通路水平上的作用,并建立它们与儿童智商之间的定量关系。在多个细胞模型中测量目标区域的DNAm并与人群数据进行比较。然后通过基准剂量(BMD)模型建立铅暴露与神经毒性和DNAm的剂量-反应关系,其次是潜在的信号通路筛选。结果表明,儿童智商与FAM50B/PTCHD3DNAm之间存在定量线性关系(FAM50B和PTCHD3的DNAm分别在51.40%-78.78%和31.41%-74.19%之间),当儿童智商>90时,这种关系更显著。受试者工作特性(ROC)和校准曲线表明FAM50B/PTCHD3DNAm在预测儿童智商方面具有令人满意的准确性和一致性,性别和CpG位点分组数据的敏感性分析证实了这一点。在细胞实验中,FAM50BDNAm与活性氧(ROS)产生之间也存在定量线性关系,由PI3K-AKT信号通路介导。此外,ROS的铅BMD接近FAM50BDNAm,提示FAM50BDNAm是对铅引起的不良结局进行风险评估的合适生物标志物.集体采取,这些结果表明FAM50B/PTCHD3可应用于EHRA和预防/干预铅对儿童智商的不利影响。
    At present, the application of DNA methylation (DNAm) biomarkers in environmental health risk assessment (EHRA) is more challenging due to the unclearly quantitative relationship between them. We aimed to explore the role of FAM50B and PTCHD3 at the level of signaling pathways, and establish the quantitative relationship between them and children\'s intelligence quotients (IQs). DNAm of target regions was measured in multiple cell models and was compared with the human population data. Then the dose-response relationships of lead exposure with neurotoxicity and DNAm were established by benchmark dose (BMD) model, followed by potential signaling pathway screening. Results showed that there was a quantitative linear relationship between children\'s IQs and FAM50B/PTCHD3 DNAm (DNAm between 51.40 % - 78.78 % and 31.41 % - 74.19 % for FAM50B and PTCHD3, respectively), and this relationship was more significant when children\'s IQs > 90. The receiver operating characteristic (ROC) and calibration curves showed that FAM50B/PTCHD3 DNAm had a satisfying accuracy and consistency in predicting children\'s IQs, which was confirmed by sensitivity analysis of gender and CpG site grouping data. In cell experiments, there was also a quantitative linear relationship between FAM50B DNAm and reactive oxygen species (ROS) production, which was mediated by PI3K-AKT signaling pathway. In addition, the lead BMD of ROS was close to that of FAM50B DNAm, suggesting that FAM50B DNAm was a suitable biomarker for the risk assessments of adverse outcomes induced by lead. Taken collectively, these results suggest that FAM50B/PTCHD3 can be applied to EHRA and the prevention/intervention of adverse effects of lead on children\'s IQs.
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  • 文章类型: Journal Article
    背景:我们描述了一种DNA甲基化测定,名为MPAP测试,使用宫颈刮擦作为子宫内膜癌检测的替代技术。
    方法:多中心医院,我们进行了两阶段验证研究,以验证MPap测试的癌症检测性能.从两个基因(BHLHE22,CDO1)的DNA甲基化状态确定MPap值,并结合其他两个临床变量(年龄,BMI)。在阶段1中建立MPap值的截止阈值并在阶段2中验证。共有592名异常子宫出血的妇女从台湾的五个医疗中心进行登记。
    结果:在第一阶段,灵敏度,特异性,MPap检测子宫内膜癌的阳性预测值和阴性预测值分别为92.9%,71.5%,39.8%,和98.0%,分别。这些值在第二阶段进行了验证,为92.5%,73.8%,40.2%,98.1%。此外,MPap在检测子宫内膜癌的敏感性和阴性预测值方面优于经阴道超声。当我们在台湾国民健康保险数据集中应用MPap对子宫内膜癌检测进行分诊的算法时,我们发现它可以减少69~73%的侵入性手术。
    结论:MPap可能为子宫内膜癌的检测提供了可行的替代方法,并且可以被视为一种分类测试,以减少不必要的侵入性程序。
    BACKGROUND: We describe a DNA methylation assay, named MPap test, using cervical scraping as an alternative technique for endometrial cancer detection.
    METHODS: A multicenter hospital-based, two-stage validation study was conducted to validate the cancer detection performance of the MPap test. The MPap value was determined from the DNA methylation status of two genes (BHLHE22, CDO1) and combined with two other clinical variables (age, BMI). The cutoff threshold of the MPap value was established in stage 1 and validated in stage 2. A total of 592 women with abnormal uterine bleeding were enrolled from five medical centers throughout Taiwan.
    RESULTS: In stage 1, the sensitivity, specificity, and positive and negative predictive values of the MPap test for detecting endometrial cancer were 92.9%, 71.5%, 39.8%, and 98.0%, respectively. These values were validated in stage 2, being 92.5%, 73.8%, 40.2%, and 98.1%. Moreover, MPap outperformed transvaginal ultrasound in sensitivity and negative predictive values for detecting endometrial cancer. When we applied the algorithm for triage of endometrial cancer detection by MPap in the Taiwan National Health Insurance dataset, we found that it may reduce invasive procedures by 69~73%.
    CONCLUSIONS: MPap may provide a feasible alternative for endometrial cancer detection and can be considered as a triage test to reduce unnecessary invasive procedures.
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  • 文章类型: Journal Article
    子宫内膜癌是发达国家最常见的妇科恶性肿瘤之一。目前,必须开发一种可靠的,非侵入性,或EC的微创检测方法。我们探索了使用子宫内膜刷样品(带有“Tao刷”)和宫颈刮片(带有“Pap刷”)中的DNA甲基化标记物用于早期检测EC的可能性。我们分析了来自癌症基因组图谱(TCGA)和基因表达综合(GEO)数据集的EC和正常子宫内膜组织的甲基化数据。优化的甲基化敏感限制性内切酶结合实时荧光定量PCR(MSRE-qPCR)用于甲基化检测。训练集中包括143个子宫内膜组织,103陶,和109个巴氏刷样本。验证集包括110个Tao和112个Pap刷样本。在TCGA和GEO数据集中,与正常子宫内膜组织相比,PCDHGB7在EC中显著高甲基化(AUC>0.95),这在临床样本中得到了证实。在巴氏画笔样本中,AUC为0.86,灵敏度为80.65%,特异性为82.81%,而陶刷样品表现出更高的特异性(95.31%)。Tao和Pap刷样品的组合将灵敏度显著提高到90.32%。在验证集中,最终模型的灵敏度为98.61%,特异性为60.53%,阳性预测值为82.56%,阴性预测值为95.83%。这些结果证明了新的甲基化标记的潜在应用,宫颈刮片和子宫内膜刷中的高甲基化PCDHGB7,这提供了一个可行的,非侵入性,或微创方法用于不同临床特征和组织学的早期子宫内膜癌检测,以补充目前的宫腔镜诊断。
    Endometrial cancer (EC) is one of the most common gynecologic cancers in developed countries. Presently, it is imperative to develop a reliable, noninvasive, or minimally invasive detection method for EC. We explored the possibility of using DNA methylation marker from endometrial brush samples (with a \"Tao brush\") and cervical scrapes (with a \"Pap brush\") for early detection of EC. We analyzed the methylation data of EC and normal endometrial tissues from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data sets. An optimized methylation-sensitive restriction enzyme combined with real-time fluorescent quantitative PCR (MSRE-qPCR) was used for methylation detection. Included in the training set were 143 endometrial tissues, 103 Tao, and 109 Pap brush samples. The validation set included 110 Tao and 112 Pap brush samples. PCDHGB7 was significantly hypermethylated in EC compared with normal endometrial tissues in the TCGA and GEO data sets (AUC >0.95), which was verified in clinical samples. In the Pap brush samples, the AUC was 0.86 with 80.65% sensitivity and 82.81% specificity, whereas the Tao brush samples exhibited higher specificity (95.31%). The combination of Tao and Pap brush samples significantly increased the sensitivity to 90.32%. In the validation set, the final model yielded a sensitivity of 98.61%, specificity of 60.53%, positive predictive value of 82.56%, and negative predictive value of 95.83%. These results demonstrate the potential application of the novel methylation marker, hypermethylated PCDHGB7, in cervical scrapings and endometrial brush, which provides a viable, noninvasive, or minimally invasive method for early endometrial cancer detection across different clinical features and histologies to supplement current hysteroscopy diagnosis.
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