Consensus method

共识方法
  • 文章类型: Journal Article
    模型精度的估计在蛋白质结构预测中起着至关重要的作用,目的是准确客观地评价预测蛋白质结构模型的质量。这个过程不仅是筛选接近真实结构的候选模型的关键,同时也为进一步优化蛋白质结构提供了指导。随着AlphaFold2在单体结构方面的重大进步,单结构域蛋白质结构预测问题已得到广泛解决。相应地,评估单结构域蛋白质模型质量的重要性下降,研究重点已经转移到蛋白质复合物模型精度的估计上。在这次审查中,我们的目标是提供参考和统计指标的全面概述,以及代表性的方法,以及当前四个不同方面的挑战(拓扑全局评分,接口总分,界面残差-明智评分,和三级残差-明智评分)在复杂EMA领域。
    Estimation of model accuracy plays a crucial role in protein structure prediction, aiming to evaluate the quality of predicted protein structure models accurately and objectively. This process is not only key to screening candidate models that are close to the real structure, but also provides guidance for further optimization of protein structures. With the significant advancements made by AlphaFold2 in monomer structure, the problem of single-domain protein structure prediction has been widely solved. Correspondingly, the importance of assessing the quality of single-domain protein models decreased, and the research focus has shifted to estimation of model accuracy of protein complexes. In this review, our goal is to provide a comprehensive overview of the reference and statistical metrics, as well as representative methods, and the current challenges within four distinct facets (Topology Global Score, Interface Total Score, Interface Residue-Wise Score, and Tertiary Residue-Wise Score) in the field of complex EMA.
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  • 文章类型: Journal Article
    目的:共识方法对于制定临床指南至关重要。不同的方法,如德尔菲和名义分组技术,是常用的,但是缺乏有关如何有效实施它们的详细说明。调查旨在探讨主席的意见和态度,关于指南制定过程中共识方法的关键要素的小组和工作组。
    方法:我们使用横断面设计进行了这项研究,并向利益相关者发送了结构化问卷,包括椅子,小组成员,和工作组的参与者,通过流行的手机应用微信。我们使用目的性抽样和雪球抽样的组合选择了参与者。问卷收集了人口统计信息,经验,意见,以及对共识方法和指导方针制定的担忧。
    结果:样本包括代表31个省或市的290名参与者。其中,大多数受访者(n=107,36.9%)来自北京。大多数参与者,具体为211(72.76%),拥有高级职称,186人(64.14%)遵守现行准则。德尔菲法是最常用的共识法(n=132,42.31%),但受访者对它只有初步了解(n=147,47.12%)。共识过程还揭示了药物经济学家参与的不足,病人,和护士。
    结论:共识方法必须在指南制定过程中标准化和一致使用。这项研究的结果提供了对不同角色的见解,以及在指南制定过程中应用共识过程的更有效方法。
    Consensus methods are crucial in developing clinical guidelines. Different methods, such as the Delphi and nominal group techniques, are commonly used, but there is a lack of detailed instructions on how to implement them effectively. The survey aims to explore the opinions and attitudes of the chair, panel and working group on the critical elements of the consensus methods during guideline development.
    We used a cross-sectional design to conduct this study and sent a structured questionnaire to stakeholders, including the chair, panel members, and working group participants, through the popular mobile phone application WeChat.We selected participants using a combination of purposive and snowball sampling. The questionnaire gathered information on demographics, experiences, opinions, and concerns regarding consensus methods and guideline development.
    The sample comprised 290 participants representing 31 provinces or municipalities. Among them, the most significant number of respondents (n = 107, 36.9%) were from Beijing. Most participants, specifically 211 (72.76%), held senior professional titles, while 186 (64.14%) adhered to ongoing guidelines. The Delphi method was the most commonly used consensus method (n = 132, 42.31%), but the respondents had only a preliminary understanding of it (n = 147, 47.12%). The consensus process also revealed the insufficiency of involving pharmacoeconomists, patients, and nurses.
    Consensus methods have to be standardised and used consistently in the guideline development process. The findings of this study offer insights into diverse roles and more effective ways to apply the consensus process during guideline development.
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  • 文章类型: Journal Article
    Pullulanase (EC 3.2.1.41) is a well-known starch-debranching enzyme. Enhancing the thermostability of Pullulanase is required for industrial application. In this study, we used two methods to improve the thermostability of the pullulanase from Anoxybacillus sp. LM18-11; these methods were the modified amino acid consensus method combined with the analyses of the residue water-exposed surface (ACC) and the deletion of flexible domains. Four mutants (Y477A, Y175C, L215C and R473E) were obtained via the modified consensus method exhibited varying degrees of improvements in terms of thermostability. One deletion mutant termed D3 (residues(686-688)) was obtained and exhibited enhanced thermostability due to deletion of the flexible region at the C-terminus. The combination of the two strategies yielded the mutant M18 (Y477A/D3/Y175C/L215P/R473E). It retained 66% of its initial activity after incubation at 60 °C for 72 hrs, whereas that of the wild-type enzyme was only 35%. After incubation at 65 °C for 4 h, M18 retained 50.6% of its initial activity, whereas that of the wild-type was only 16.8%, respectively. Additionally, kinetic studies revealed that the Km of M17 (Y477A/D3/Y175C/L215P) was decreased by 33.9% and that the Kcat/Km value of M17 increased by 50%, while M18 exhibited Km and Kcat/Km values that were similar to those of the wild-type enzyme. The attractive improved thermostability and the high catalytic efficiency made M17 and M18 more suitable for industrial application.
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