Circulating biomarkers

循环生物标志物
  • 文章类型: Journal Article
    一种使用血浆microRNA的非侵入性方法为甲状腺癌诊断提供了新的见解。这项研究的目的是通过使用下一代测序(NGS)分析血浆miRNA来发现甲状腺乳头状癌(PTC)的潜在循环生物标志物。
    从健康个体的外周血样本中分离血浆miRNAs,诊断为PTC的患者,还有甲状腺良性结节.使用IlluminaNovaSeq6000平台来建立miRNA表达谱。利用随机森林(RF)算法鉴定用于诊断目的的候选miRNA。随后使用RT-qPCR在独立的验证集中验证所选择的miRNA。
    NGS结果显示,发现组中健康个体和甲状腺良性结节患者之间的血浆miRNA表达模式一致(6例健康病例,17例良性病例),而与PTC组(17例PTC病例)有显著差异。鉴定了7种表现出显著表达差异的miRNA并将其用于构建RF分类器。用于PTC诊断的接收器工作特性(ROC)分析,曲线下面积(AUC)为0.978。随后对与这7种miRNA相关的靶基因的KEGG和GO分析突出了与肿瘤和细胞周期相关的途径。在单独的队列中通过RT-qPCR进行独立验证(15对照,15个PTC组)强调hsa-miR-301a-3p和hsa-miR-195-5p是PTC诊断的有希望的候选者。
    总而言之,我们的研究通过随机森林算法在血浆中建立了一个7-miRNA小组,在区分健康或良性PTC方面具有显着的性能。hsa-miR-301a-3p,血浆中的hsa-miR-195-5p在亚洲种族PTC诊断中具有进一步研讨的潜力。
    UNASSIGNED: A non-invasive method using plasma microRNAs provides new insights into thyroid cancer diagnosis. The objective of this study was to discover potential circulating biomarkers of papillary thyroid carcinoma (PTC) through the analysis of plasma miRNAs using next-generation sequencing (NGS).
    UNASSIGNED: Plasma miRNAs were isolated from peripheral blood samples collected from healthy individuals, patients diagnosed with PTC, and those with benign thyroid nodules. The Illumina NovaSeq 6000 platform was employed to establish the miRNA expression profiles. Candidate miRNAs for diagnostic purposes were identified utilizing the Random Forest (RF) algorithm. The selected miRNAs were subsequently validated in an independent validation set using RT-qPCR.
    UNASSIGNED: NGS results revealed consistent plasma miRNA expression patterns among healthy individuals and patients with benign thyroid nodules in the discovery set (6 healthy cases, 17 benign cases), while differing significantly from those observed in the PTC group (17 PTC cases). Seven miRNAs exhibiting significant expression differences were identified and utilized to construct an RF classifier. Receiver operating characteristic (ROC) analysis for PTC diagnosis, and the area under the curve (AUC) was 0.978. Subsequent KEGG and GO analyses of the target genes associated with these 7 miRNAs highlighted pathways relevant to tumors and the cell cycle. Independent validation through RT-qPCR in a separate cohort (15 CONTROL, 15 PTC groups) underscored hsa-miR-301a-3p and hsa-miR-195-5p as promising candidates for PTC diagnosis.
    UNASSIGNED: In conclusion, our study established a seven-miRNA panel in plasma by Random Forest algorithm with significant performance in discriminating PTC from healthy or benign group. hsa-miR-301a-3p, hsa-miR-195-5p in plasma have potential for further study in the diagnosis of PTC in Asian ethnic.
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  • 文章类型: Review
    患有代谢功能障碍相关的脂肪肝疾病(MAFLD)的人群在全球范围内越来越普遍。识别有进展到晚期风险的人对于及时提供干预措施和适当的护理是必要的。肝活检目前被认为是诊断和分期MAFLD的金标准。但它有相关的风险和局限性。这刺激了对MAFLD的非侵入性诊断的探索,尤其是脂肪性肝炎和纤维化。这些非侵入性方法主要包括生物标志物和来自人体测量的算法,血清试验,成像或粪便宏基因组分析。然而,他们仍然需要严格和广泛的临床验证来进行诊断性能.
    The population with metabolic dysfunction-associated fatty liver disease (MAFLD) is increasingly common worldwide. Identification of people at risk of progression to advanced stages is necessary to timely offer interventions and appropriate care. Liver biopsy is currently considered the gold standard for the diagnosis and staging of MAFLD, but it has associated risks and limitations. This has spurred the exploration of non-invasive diagnostics for MAFLD, especially for steatohepatitis and fibrosis. These non-invasive approaches mostly include biomarkers and algorithms derived from anthropometric measurements, serum tests, imaging or stool metagenome profiling. However, they still need rigorous and widespread clinical validation for the diagnostic performance.
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  • 文章类型: Journal Article
    早期诊断对于改善圆锥角膜(KC)的预后很重要。环状RNA(circularRNAs)的稳定表达和闭环结构使其成为疾病诊断和治疗的理想选择。然而,目前还没有研究circRNAs在KC中的表达模式和潜在功能。因此,本研究通过转录组测序和circRNA表达谱分析探索了KC角膜的circRNA表达谱。通过分析来自KC患者和正常对照的50个配对血液样本的circRNAs表达水平,探索了血液circRNAs对KC的诊断潜力。结果表明,在KC组织中鉴定出107个显着上调和145个显着下调的circRNAs(|倍数变化|≥2.0,p值<0.05)。在更多的角膜样品中进一步验证了八个顶部不同表达的circRNAs。其中,5个在外周血中表达的circRNAs,和四个circRNAs(circ_0006156,circ_0006117,circ_0000284和circ_0001801)在KC患者外周血中也显示出显着的下调。血液中circ_0000284表达水平的早期,中度,和晚期KC患者均显著低于对照组。血circ_0006117表达水平与矫正视力值正相关,与KC眼的背抬高值呈负相关。值得注意的是,这些circRNAs的表达水平将KC患者与健康患者区分开来,circ_0000284、circ_0001801和circ_0006117的曲线下面积(AUC)分别为0.7306、0.6871和0.6701。Further,在逻辑回归模型下,5个circRNAs的AUC值为0.8203,表明它们可以作为KC诊断的有效生物标志物发挥作用.总之,circRNAs的表达与KC有关,四个显著差异表达的circRNAs证明了作为疾病生物标志物的潜力。
    Early diagnosis is important for improving the outcomes of keratoconus (KC). Stable expression and a closed-loop structure of circular RNAs (circRNAs) make them ideal for the diagnosis and treatment of diseases. However, the expression pattern and potential function of circRNAs in KC is not studied yet. Hence, this study explored the circRNA expression profile of KC corneas through transcriptome sequencing and circRNA expression profile analysis. The diagnostic potential of blood circRNAs for KC was explored by analysing the circRNAs\' expression levels of fifty paired blood samples from patients with KC and normal controls. The results showed that 107 significantly upregulated and 145 significantly downregulated circRNAs (|fold change| ≥ 2.0, p-value <0.05) were identified in KC tissues. Eight top differently expressed circRNAs were further validated in more cornea samples. Among them, five circRNAs expressed in peripheral blood, and four circRNAs (circ_0006156, circ_0006117, circ_0000284 and circ_0001801) showed significant downregulation in KC patients\' peripheral blood too. The blood circ_0000284 expression levels of early, moderate, and advanced KC patients both were significantly lower than the controls. The blood circ_0006117 expression levels present a positive correlation with corrected distance visual acuity values, and a negative correlation with back elevation values of KC eyes. Notably, the expression levels of these circRNAs distinguished KC patients from their healthy counterparts, with the area under the curve (AUC) of circ_0000284, circ_0001801, and circ_0006117 being 0.7306, 0.6871 and 0.6701, respectively. Further, the AUC value for five circRNAs under the logistic regression model was 0.8203, indicating that they can function as effective biomarkers for the KC diagnostics. In conclusion, the expression of circRNAs showed a relationship with KC, with four significantly differentially expressed circRNAs demonstrating potential as biomarkers for the disease.
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  • 文章类型: Journal Article
    我们提出了一种无标记的微流控芯片,用于从血液样本中分离循环白血病细胞(CLCs),重点关注其在急性髓系白血病(AML)中的临床应用。微流体芯片实现了大约92%的捕获效率。该研究分析了一组来自不同疾病阶段的AML患者的66份血液标本,包括新诊断和复发病例,完全缓解的患者,以及部分缓解的人。结果显示,疾病活动期和缓解期之间的CLC计数存在显着差异(p<0.0001),建议阈值为5个CLC,以区分两者。微流控芯片在预测疾病复发方面表现出95.4%的灵敏度和100%的特异性。此外,使用液滴数字PCR对捕获的CLC进行下游分子分析,允许鉴定与AML相关的基因突变。通过FACS与骨髓抽吸物处理的比较分析证明了微流控芯片在追踪疾病负担方面的可靠性和准确性。这两种方法获得了高度一致的结果。微流控芯片的非侵入性及其提供对疾病进展的实时见解的能力使其成为用于AML的主动监测和个性化患者护理的有前途的工具。
    We present a label-free microfluidic chip for the segregation of circulating leukemia cells (CLCs) from blood samples, with a focus on its clinical applications in Acute Myeloid Leukemia (AML). The microfluidic chip achieved an approximate capture efficiency of 92%. The study analyzed a comprehensive set of 66 blood specimens from AML patients in different disease stages, including newly diagnosed and relapsing cases, patients in complete remission, and those in partial remission. The results showed a significant difference in CLC counts between active disease stages and remission stages (p < 0.0001), with a proposed threshold of 5 CLCs to differentiate between the two. The microfluidic chip exhibited a sensitivity of 95.4% and specificity of 100% in predicting disease recurrence. Additionally, the captured CLCs were subjected to downstream molecular analysis using droplet digital PCR, allowing for the identification of genetic mutations associated with AML. Comparative analysis with bone marrow aspirate processing by FACS demonstrated the reliability and accuracy of the microfluidic chip in tracking disease burden, with highly agreement results obtained between the two methods. The non-invasive nature of the microfluidic chip and its ability to provide real-time insights into disease progression make it a promising tool for the proactive monitoring and personalized patient care of AML.
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  • 文章类型: Journal Article
    Chronic Myelogenous Leukemia (CML) is a prevalent hematologic malignancy characterized by the malignant transformation of myeloid cells and their proliferation in the peripheral blood. The management of CML poses significant challenges, particularly in detecting and eradicating minimal residual disease, which is crucial for preventing relapse and improving survival outcomes. Traditional minimal residual disease detection methods, such as bone marrow aspiration, are invasive and have limitations which include the potential for sampling errors and false negatives. This study introduces a novel label-free microfluidic chip designed for the segregation and recovery of circulating leukemia cells, offering a non-invasive liquid biopsy approach with potential applications in precision medicine. Over July 2021 to October 2023, we recruited 56 CML patients across various disease stages and collected blood samples for analysis using our microfluidic device. The device demonstrated high efficacy in isolating circulating leukemia cells, with an optimal capture efficiency of 78% at a sample flow rate of 3 mL/h. Our results indicate that the microfluidic device can efficiently segregate and quantify circulating leukemia cells, providing a detailed understanding of CML progression and treatment response. The significant reduction in circulating leukemia cell counts in patients in complete remission highlights the device\'s potential in monitoring treatment efficacy. Furthermore, the device\'s sensitivity in detecting minimal residual disease could offer a more reliable prognostic tool for therapeutic decision-making in CML management.
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  • 文章类型: Journal Article
    目的:循环生物标志物提供关于疾病表现的潜在诊断或预后信息,进展或两者兼而有之。早期发现循环风险生物标志物对于预防非酒精性脂肪性肝病(NAFLD)至关重要。我们旨在使用双样本孟德尔随机化(MR)设计系统地评估遗传预测的60种循环生物标志物与NAFLD的潜在因果关系。
    结果:我们提取了60种循环生物标志物的工具变量,并从3个来源获得了NAFLD的全基因组关联数据[(包括Anstee,FinnGen和UKBiobank(N范围:19264-377988)]在欧洲血统的个人中。我们的主要方法是逆方差加权(IVW)MR,并进行了一系列额外的敏感性分析,以检验MR的假设。MR结果显示,遗传预测的高密度脂蛋白胆固醇(比值比(OR)=0.86,95%置信区间(CI):0.77-0.96)和维生素D(OR=0.39,95%CI:0.19-0.78)水平降低NAFLD的风险,而遗传预测较高的丙氨酸(OR=1.68,95%CI:1.21-2.33),组氨酸(OR=1.21,95%CI:1.00-1.46),乳酸(OR=2.64,95%CI:1.09-6.39),甘油三酯(OR=1.16,95%CI:1.05-1.13),铁蛋白(OR=1.17,95%CI:1.01-1.37),血清铁(OR=1.23,95%CI:1.07-1.41)和转铁蛋白饱和度(OR=1.16,95%CI:1.05-1.29),成分4(OR=1.10,95%CI:1.01-1.20),白细胞介素-1受体拮抗剂(OR=1.12,95%CI:1.04-1.21)和白细胞介素-6(OR=1.62,95%CI:1.14-2.30)水平增加NAFLD的风险。
    结论:这些发现可能有助于阐明这些因果关系的潜在过程,并为关注高危人群和特定生物标志物的治疗管理提供强有力的证据。
    OBJECTIVE: Circulating biomarkers provide potential diagnostic or prognostic information on disease presentation, progression or both. Early detection of circulating risk biomarkers is critical for non-alcoholic fatty liver disease (NAFLD) prevention. We aimed to systematically assess the potential causal relationship of genetically predicted 60 circulatory biomarkers with NAFLD using a two-sample Mendelian randomization (MR) design.
    RESULTS: We extracted instrumental variables for 60 circulating biomarkers, and obtained genome-wide association data for NAFLD from 3 sources [(including Anstee, FinnGen and UK Biobank (N ranges: 19264-377988)] among individuals of European ancestry. Our primary method was inverse-variance weighted (IVW) MR, with a series of additional and sensitivity analyses to test the hypothesis of MR. MR results showed that genetically predicted higher density lipoprotein-cholesterol (odds ratio (OR) = 0.86, 95% confidence interval (CI): 0.77-0.96) and vitamin D (OR = 0.39, 95% CI: 0.19-0.78) levels decreased the risk of NAFLD, whereas genetically predicted higher alanine (OR = 1.68, 95% CI: 1.21-2.33), histidine (OR = 1.21, 95% CI: 1.00-1.46), lactate (OR = 2.64, 95% CI: 1.09-6.39), triglycerides (OR = 1.16, 95% CI: 1.05-1.13), ferritin (OR = 1.17, 95% CI: 1.01-1.37), serum iron (OR = 1.23, 95% CI: 1.07-1.41) and transferrin saturation (OR = 1.16, 95% CI: 1.05-1.29), component 4 (OR = 1.10, 95% CI: 1.01-1.20), interleukin-1 receptor antagonist (OR = 1.12, 95% CI: 1.04-1.21) and interleukin-6 (OR = 1.62, 95% CI: 1.14-2.30) levels increased the risk of NAFLD.
    CONCLUSIONS: The findings might aid in elucidating the underlying processes of these causal relationships and provide strong evidence for focusing on high-risk populations and the therapeutic management of specific biomarkers.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    作为世界上第二常见的恶性肿瘤,肺癌是对人类健康的巨大威胁。在过去的几十年里,ncRNAs作为一类调节性RNA在肺癌中的作用和机制已经被深入研究。特别是,由于体液中的ncRNAs具有低侵袭性和可及性,因此作为肺癌诊断和预后以及肺癌治疗评估的生物标志物越来越受到关注。作为肺癌中新兴的肿瘤生物标志物,循环ncRNAs很容易获得,独立于组织标本,与肿瘤中的一些生物学过程相关,能很好地反映肿瘤的发生和进展。循环ncRNA具有非常高的潜力作为生物标志物,并有望开发基于ncRNA的疗法。在目前的研究中,已有大量证据表明循环ncRNA作为生物标志物具有临床意义和价值.在这次审查中,我们总结了ncRNAs是如何产生和进入循环的,为后续检测保持稳定。总结了循环ncRNAs作为生物标志物在非小细胞肺癌诊断和预后判断中的可行性。在目前非小细胞肺癌的系统治疗中,循环ncRNAs也可以预测耐药性,不良反应,以及靶向治疗中的其他事件,化疗,免疫疗法,和放疗,对指导非小细胞肺癌的系统治疗具有良好的潜力。
    As the second most common malignant tumor in the world, lung cancer is a great threat to human health. In the past several decades, the role and mechanism of ncRNAs in lung cancer as a class of regulatory RNAs have been studied intensively. In particular, ncRNAs in body fluids have attracted increasing attention as biomarkers for lung cancer diagnosis and prognosis and for the evaluation of lung cancer treatment due to their low invasiveness and accessibility. As emerging tumor biomarkers in lung cancer, circulating ncRNAs are easy to obtain, independent of tissue specimens, and can well reflect the occurrence and progression of tumors due to their correlation with some biological processes in tumors. Circulating ncRNAs have a very high potential to serve as biomarkers and hold promise for the development of ncRNA-based therapeutics. In the current study, there has been extensive evidence that circulating ncRNA has clinical significance and value as a biomarker. In this review, we summarize how ncRNAs are generated and enter the circulation, remaining stable for subsequent detection. The feasibility of circulating ncRNAs as biomarkers in the diagnosis and prognosis of non-small cell lung cancer is also summarized. In the current systematic treatment of non-small cell lung cancer, circulating ncRNAs can also predict drug resistance, adverse reactions, and other events in targeted therapy, chemotherapy, immunotherapy, and radiotherapy and have promising potential to guide the systematic treatment of non-small cell lung cancer.
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  • 文章类型: Meta-Analysis
    背景:胃癌(GC)通常诊断为晚期,因此患者预后不良。这意味着这种癌症的早期检测将改善患者的预后和生存率。本系统综述探讨了循环蛋白和代谢物生物标志物与GC发展的关系。
    方法:在Medline上进行了文献检索,直到2021年11月,Embase,科克伦图书馆,和WebofScience数据库。如果他们评估血液中的循环蛋白质和代谢物,尿液,或唾液,并确定它们与GC风险的关系。使用纽卡斯尔-渥太华量表进行队列研究,确定已确定研究的质量。进行随机和固定效应荟萃分析以计算合并比值比。
    结果:共纳入53项研究。高水平的抗幽门螺杆菌IgG水平,胃蛋白酶原I(PGI)<30µg/L和血清胃蛋白酶原I/胃蛋白酶原II(PGI/II)比值<3与发生GC的风险呈正相关(合并比值比(OR):2.70;95%CI:1.44-5.04,5.96,95%CI:2.65-13.42和4.43;95%CI:3.04-6.47).此外,发现铁蛋白之间存在反比关系,铁和转铁蛋白水平和发生GC的风险(OR:0.62;95%CI:0.38-1,0.97;95%CI:0.94-1和0.85;95%CI:0.76-0.94)。然而,葡萄糖水平之间没有关联,胆固醇,维生素C,维生素B12,维生素A,α-胡萝卜素,β-胡萝卜素,α-生育酚,γ-生育酚,和GC风险。
    结论:汇总分析表明,高水平的抗幽门螺杆菌IgG,PGI<30µg/L,血清PGI/II比值<3,铁蛋白水平低,铁和转铁蛋白与GC风险相关。
    Gastric cancer (GC) is often diagnosed at an advanced stage and thus patients have a poor prognosis. This implies that early detection of this cancer will improve patient prognosis and survival. This systematic review explored the association of circulating protein and metabolite biomarkers with GC development.
    A literature search was conducted until November 2021 on Medline, Embase, Cochrane library, and Web of Science databases. Studies were included if they assessed circulating proteins and metabolites in blood, urine, or saliva and determined their association with GC risk. Quality of identified studies was determined using the Newcastle-Ottawa scale for cohort studies. Random and fixed effects meta-analyses were performed to calculate pooled odds ratio.
    A total of 53 studies were included. High levels of anti-Helicobacter pylORi IgG levels, pepsinogen I (PGI) <30 µg/L and serum pepsinogen I/ pepsinogen II (PGI/II) ratio<3 were positively associated with risk of developing GC (pooled odds ratio (OR): 2.70; 95% CI: 1.44-5.04, 5.96, 95% CI: 2.65-13.42 and 4.43; 95% CI: 3.04-6.47). In addition, an inverse relationship was found between ferritin, iron and transferrin levels and risk of developing GC (OR: 0.62; 95% CI: 0.38-1,0.97; 95% CI: 0.94-1 and 0.85; 95% CI: 0.76-0.94). However, there was no association between levels of glucose, cholesterol, vitamin C, vitamin B12, vitamin A, α-Carotene, β-Carotene, α-Tocopherol, γ-Tocopherol, and GC risk.
    The pooled analysis demonstrated that high levels of anti-Helicobacter pylORi IgG, PGI<30µg/L and serum PGI/II ratio <3 and low levels of ferritin, iron and transferrin were associated with risk of GC.
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  • 文章类型: Review
    肺炎旁胸腔积液(PPE)是肺炎患者的常见并发症。及时准确地诊断PPE对其管理具有重要价值。循环和胸腔积液中生物标志物的测量具有容易获得的优点,周转时间短,客观性和低成本,因此对PPE诊断和分层具有实用性。迄今为止,据报道,许多生物标志物对PPE的管理具有价值.这里,我们回顾了胸腔积液和循环生物标志物对PPE诊断和分层的价值.讨论的生物标志物是C反应蛋白,降钙素原,presepsin,在骨髓细胞上表达的可溶性触发受体1,脂多糖结合蛋白,炎症标志物,血清淀粉样蛋白A,可溶性尿激酶纤溶酶原激活物受体,基质金属蛋白酶,pentraxin-3和无细胞DNA。我们发现没有可用的生物标志物具有诊断和分层PPE的足够性能。因此,需要进一步的工作来识别和验证新的生物标志物,以及它们的组合,用于PPE的管理。
    Parapneumonic pleural effusion (PPE) is a common complication in patients with pneumonia. Timely and accurate diagnosis of PPE is of great value for its management. Measurement of biomarkers in circulating and pleural fluid have the advantages of easy accessibility, short turn-around time, objectiveness and low cost and thus have utility for PPE diagnosis and stratification. To date, many biomarkers have been reported to be of value for the management of PPE. Here, we review the values of pleural fluid and circulating biomarkers for the diagnosis and stratification PPE. The biomarkers discussed are C-reactive protein, procalcitonin, presepsin, soluble triggering receptor expressed on myeloid cells 1, lipopolysaccharide-binding protein, inflammatory markers, serum amyloid A, soluble urokinase plasminogen activator receptor, matrix metalloproteinases, pentraxin-3 and cell-free DNA. We found that none of the available biomarkers has adequate performance for diagnosing and stratifying PPE. Therefore, further work is needed to identify and validate novel biomarkers, and their combinations, for the management of PPE.
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