Carboxylase

羧化酶
  • 文章类型: Journal Article
    二氧化碳(CO2)排放是全球气候变化的主要原因。合成CO2固定代表了一种非常有吸引力和可持续的碳中和方法。与化学催化的局限性不同,生物CO2固定显示出高选择性和在温和条件下操作的能力。酰胺水解酶的超家族已经证明了合成一系列芳香族单羧酸的能力。然而,报道的能够合成芳族二羧酸的羧化酶是稀缺的。其中,4-羟基间苯二甲酸在各个领域的应用中具有巨大的潜力,然而,还没有关于其合成的酶的报道。在这项研究中,我们首次开发了具有固定CO2合成4-羟基间苯二甲酸的起始活性。此外,我们设计了一种计算策略,可以有效地增强这种酶的催化活性。产生仅包含13个变体的聚焦文库。实验验证证实了最佳变体(L47M)的羧化活性的三倍改善。本文提出的计算酶设计策略在开发用于合成其他芳族二羧酸的羧化酶方面具有广泛的适用性。这为在工业合成中利用生物催化来固定CO2奠定了基础。
    Carbon dioxide (CO2) emissions constitute the primary contribution to global climate change. Synthetic CO2 fixation represents an exceptionally appealing and sustainable method for carbon neutralization. Unlike the limitations of chemical catalysis, biological CO2 fixation displays high selectivity and the ability to operate under mild conditions. The superfamily of amidohydrolases has demonstrated the ability to synthesize a range of aromatic monocarboxylic acids. However, there is a scarcity of reported carboxylases capable of synthesizing aromatic dicarboxylic acids. Among these, 4-hydroxyisophthalic acid holds significant potential for applications across various fields, yet no enzyme has been reported for its synthesis. In this study, we developed for the first time that exhibits starting activity in fixing CO2 to synthesize 4-hydroxyisophthalic acid. Furthermore, we have devised a computational strategy that effectively enhances the catalytic activity of this enzyme. A focused library comprising only 13 variants was generated. Experimental validation confirmed a threefold improvement in the carboxylation activity of the optimal variant (L47M). The computational enzyme design strategy proposed in this paper demonstrates broad applicability in developing carboxylases for synthesizing other aromatic dicarboxylic acids. This lays the groundwork for leveraging biocatalysis in industrial synthesis for CO2 fixation.
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  • 文章类型: Journal Article
    叶子的碳同位素组成(δ13C)通常用作植物性能的代表。然而,NO3的影响-vs.叶片代谢物和呼吸的CO2的δ13C上的NH4供应在很大程度上是未知的。我们为烟草植物提供了NO3-与NH4浓度比的梯度,并确定了气体交换变量,三羧酸(TCA)循环中间体的浓度和δ13C,暗呼吸CO2的δ13C和关键酶硝酸还原酶的活性,苹果酸酶和磷酸烯醇丙酮酸羧化酶。净同化率,干生物量以及有机酸和淀粉的浓度沿梯度下降。相比之下,呼吸率,细胞间CO2,可溶性糖和氨基酸的浓度增加。随着NO3-减少,所有测得的酶的活性均降低。CO2和有机酸的δ13C紧密共变,在NO3-供应下更正,表明有机酸是呼吸的潜在底物。连同分子内13C富集苹果酸的估计值,我们得出的结论是,在NO3供应下,TCA循环的回补反应的变化可能有助于有机酸中的13C富集和呼吸的CO2。因此,NO3的影响-vs.δ13C上的NH4+高度相关,特别是如果将叶片代谢物或呼吸作用的δ13C用作植物性能的代表。
    The carbon isotopic composition (δ13C) of foliage is often used as proxy for plant performance. However, the effect of N O 3 - vs. N H 4 + supply on δ13C of leaf metabolites and respired CO2 is largely unknown. We supplied tobacco plants with a gradient of N O 3 - to N H 4 + concentration ratios and determined gas exchange variables, concentrations and δ13C of tricarboxylic acid (TCA) cycle intermediates, δ13C of dark-respired CO2, and activities of key enzymes nitrate reductase, malic enzyme and phosphoenolpyruvate carboxylase. Net assimilation rate, dry biomass and concentrations of organic acids and starch decreased along the gradient. In contrast, respiration rates, concentrations of intercellular CO2, soluble sugars and amino acids increased. As N O 3 - decreased, activities of all measured enzymes decreased. δ13C of CO2 and organic acids closely co-varied and were more positive under N O 3 - supply, suggesting organic acids as potential substrates for respiration. Together with estimates of intra-molecular 13C enrichment in malate, we conclude that a change in the anaplerotic reaction of the TCA cycle possibly contributes to 13C enrichment in organic acids and respired CO2 under N O 3 - supply. Thus, the effect of N O 3 - vs. N H 4 + on δ13C is highly relevant, particularly if δ13C of leaf metabolites or respiration is used as proxy for plant performance.
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