single cell sequencing

单细胞测序
  • 文章类型: Journal Article
    UNASSIGNED:胃癌仍然是世界上最致命的肿瘤疾病之一。尽管有一些改进,胃癌患者的预后仍无法准确预测。
    UNASSIGNED:基于单细胞测序数据,我们对胃癌患者和正常组织进行了详细分析,以确定单核细胞在胃癌进展中的作用。WCGA促进了我们在TCGA中搜索等级相关基因。然后,根据单核细胞的标记基因和细胞分化基因,我们确定了单核细胞的促癌基因。基于LASSO回归,我们使用TCGA数据库建立了预后模型。通过PCA验证了模型的准确性,ROC曲线,生存分析和预后分析。最后,我们通过观察药物敏感性评估模型在临床诊断和治疗中的意义,不同风险组患者的免疫微环境和免疫检查点表达。
    未经证实:单核细胞在肿瘤微环境中分化较差。它主要在两个方面起到促进癌症的作用。一种是通过与其他肿瘤基质细胞相互作用间接促进肿瘤进展。另一种是通过MIF和TNF通路直接连接肿瘤细胞发挥促瘤作用。前者在这两个方面更为重要。共获得292个单核细胞促瘤基因,最终将12个基因纳入预后模型的构建。多种验证方法表明,我们的模型具有准确的预测能力。药敏分析可为临床患者用药提供指导。免疫微环境和免疫检查点的结果也表明了高危患者预后不良的原因。
    未经批准:总而言之,我们为胃癌患者提供了12个基因的风险评分公式和列线图,以帮助临床药物治疗和预后预测。该模型具有较好的准确性和临床意义。
    UNASSIGNED: Gastric cancer is still one of the most lethal tumor diseases in the world. Despite some improvements, the prognosis of patients with gastric cancer is still not accurately predicted.
    UNASSIGNED: Based on single cell sequencing data, we conducted a detailed analysis of gastric cancer patients and normal tissues to determine the role of monocytes in the progression of gastric cancer. WCGA facilitated our search for Grade-related genes in TCGA. Then, according to the marker genes and cell differentiation genes of monocytes, we determined the cancer-promoting genes of monocytes. Based on LASSO regression, we established a prognostic model using TCGA database. The accuracy of the model was verified by PCA, ROC curve, survival analysis and prognostic analysis. Finally, we evaluated the significance of the model in clinical diagnosis and treatment by observing drug sensitivity, immune microenvironment and immune checkpoint expression in patients with different risk groups.
    UNASSIGNED: Monocytes were poorly differentiated in tumor microenvironment. It mainly played a role in promoting cancer in two ways. One was to promote tumor progression indirectly by interacting with other tumor stromal cells. The other was to directly connect with tumor cells through the MIF and TNF pathway to play a tumor-promoting role. The former was more important in these two ways. A total of 292 monocyte tumor-promoting genes were obtained, and 12 genes were finally included in the construction of the prognosis model. A variety of validation methods showed that our model had an accurate prediction ability. Drug sensitivity analysis could provide guidance for clinical medication of patients. The results of immune microenvironment and immune checkpoint also indicated the reasons for poor prognosis of high-risk patients.
    UNASSIGNED: In conclusion, we provided a 12-gene risk score formula and nomogram for gastric cancer patients to assist clinical drug therapy and prognosis prediction. This model had good accuracy and clinical significance.
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  • 文章类型: Published Erratum
    [这更正了文章DOI:10.3389/fragi.2021.714926。].
    [This corrects the article DOI: 10.3389/fragi.2021.714926.].
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  • 文章类型: Journal Article
    生物老化,和衰老的疾病,发生在复杂的体内环境中,由多个交互过程驱动。最近开发的技术的融合使体内集中筛选成为可能:将不同扰动的文库直接施用给活体动物,随后的读数可区分每种扰动的身份及其对动物体内单个细胞的影响。这样的筛选有望在体内设置的全部丰富度中将功能基因组学有效地应用于衰老过程。在这次审查中,我们描述了体内集中筛查背后的技术,包括一系列交付选项,摄动和读出方法,并概述了它们在衰老和年龄相关疾病中的潜在应用。然后,我们建议如何在体内集中筛选,连同其每个技术基础的新兴创新,可以扩展到揭示衰老生物学中的关键悬而未决的问题,包括表观遗传重编程的机制和限制,以及识别衰老中系统信号的细胞介质。
    Biological aging, and the diseases of aging, occur in a complex in vivo environment, driven by multiple interacting processes. A convergence of recently developed technologies has enabled in vivo pooled screening: direct administration of a library of different perturbations to a living animal, with a subsequent readout that distinguishes the identity of each perturbation and its effect on individual cells within the animal. Such screens hold promise for efficiently applying functional genomics to aging processes in the full richness of the in vivo setting. In this review, we describe the technologies behind in vivo pooled screening, including a range of options for delivery, perturbation and readout methods, and outline their potential application to aging and age-related disease. We then suggest how in vivo pooled screening, together with emerging innovations in each of its technological underpinnings, could be extended to shed light on key open questions in aging biology, including the mechanisms and limits of epigenetic reprogramming and identifying cellular mediators of systemic signals in aging.
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  • 文章类型: Clinical Trial, Phase I
    MicroRNA(miRNA)抑制是几种疾病适应症中一种有前途的治疗策略。MRG-110是靶向miR-92a-3p的基于锁定核酸的反义寡核苷酸,并且实验显示对心血管疾病和伤口愈合具有已证明的治疗效果。为了首次了解抗miR-92a在人类中的活性,我们研究了miR-92a-3p在几个血液区室中的表达,并评估了MRG-110对靶抑制的影响.健康的成年人被随机分配(5:2)在七个连续递增的静脉内剂量队列之一中接受单次静脉内剂量的MRG-110或安慰剂,剂量范围为0.01至1.5mg/kg体重。MiR-92a-3p全血水平在给药后24小时和72小时以0.27和0.31mg/kg的半最大抑制时间和剂量依赖性降低,分别。在高剂量组中,在输注后24-72小时检测到>95%的抑制,并且观察到显著的抑制持续2周。在分离的CD31+细胞中检测到类似的抑制作用,高剂量组细胞外囊泡中miR-92a-3p的表达也受到抑制。在全血中测量目标去抑制,并且显示ITGA5和CD93在1.5mg/kg的剂量下增加。外周血细胞的单细胞RNA测序揭示了miR-92a靶标的细胞类型特异性去抑制。总之,这项研究表明,抗miR-92a的全身输注有效抑制外周血区室中的miR-92a,并抑制人的miR-92a靶标。
    MicroRNA (miRNA) inhibition is a promising therapeutic strategy in several disease indications. MRG-110 is a locked nucleic acid-based antisense oligonucleotide that targets miR-92a-3p and experimentally was shown to have documented therapeutic effects on cardiovascular disease and wound healing. To gain first insights into the activity of anti-miR-92a in humans, we investigated miR-92a-3p expression in several blood compartments and assessed the effect of MRG-110 on target derepression. Healthy adults were randomly assigned (5:2) to receive a single intravenous dose of MRG-110 or placebo in one of seven sequential ascending intravenous dose cohorts ranging from 0.01 to 1.5 mg/kg body weight. MiR-92a-3p whole blood levels were time and dose dependently decreased with half-maximal inhibition of 0.27 and 0.31 mg/kg at 24 and 72 h after dosing, respectively. In the high-dose groups, >95% inhibition was detected at 24-72 h postinfusion and significant inhibition was observed for 2 weeks. Similar inhibitory effects were detected in isolated CD31+ cells, and miR-92a-3p expression was also inhibited in extracellular vesicles in the high-dose group. Target derepression was measured in whole blood and showed that ITGA5 and CD93 were increased at a dose of 1.5 mg/kg. Single-cell RNA sequencing of peripheral blood cells revealed a cell type-specific derepression of miR-92a targets. Together this study demonstrates that systemic infusion of anti-miR-92a efficiently inhibits miR-92a in the peripheral blood compartment and derepresses miR-92a targets in humans.
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  • 文章类型: Congress
    The EMBO/EMBL Symposium on \'The Identity and Evolution of Cell Types\' took place in Heidelberg, Germany, on 15-19 May 2019. The symposium, which brought together a diverse group of speakers addressing a wide range of questions in multiple model systems, provided a platform to discuss how the concept of a cell type should be considered in the era of single cell omics techniques and how cell type evolution can be studied.
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