population differentiation

人口分化
  • 文章类型: Journal Article
    对城市居民暴露于空气污染的风险进行了深入研究,但其中大多数是基于住宅单位人口的静态研究。忽略居民个人日常活动和流动过程中的真实环境动态,很难准确估计居民的空气污染暴露水平,并确定暴露风险较高的人群。本文以武汉都市圈为例,高精度空气污染,和人口时空动态分布数据,并应用地理加权回归模型,双变量LISA分析,和基尼系数。老年人接触空气污染的风险,低年龄,测量了武汉市的劳动年龄社区,并研究了老年人和儿童等弱势群体的健康公平性。我们发现忽略居民的时空行为活动低估了PM2.5对居民的实际暴露危害。老年人暴露于空气污染的风险高于其他年龄组。在老龄化群体中,少数老年人接触污染的风险较高。老年人的高暴露风险社区主要分布在城市的中心和副中心区域,具有连续分布特征。与其他人群相比,儿童的暴露风险没有显着差异,但是有几个孩子特别容易受到污染。儿童的高暴露社区主要位于郊区,具有离散分布。与传统的PM2.5静态暴露评估相比,本文提出的动态评估方法考虑了城市人口的高流动性和空气污染。因此,它可以准确揭示空气污染的实际风险,并确定空气污染高风险的地区和人群,为提出降低城市PM2.5、提高城市空间公平性的规划政策提供了科学依据。
    In-depth studies have been conducted on the risk of exposure to air pollution in urban residents, but most of them are static studies based on the population of residential units. Ignoring the real environmental dynamics during daily activity and mobility of individual residents makes it difficult to accurately estimate the level of air pollution exposure among residents and determine populations at higher risk of exposure. This paper uses the example of the Wuhan metropolitan area, high-precision air pollution, and population spatio-temporal dynamic distribution data, and applies geographically weighted regression models, bivariate LISA analysis, and Gini coefficients. The risk of air pollution exposure in elderly, low-age, and working-age communities in Wuhan was measured and the health equity within vulnerable groups such as the elderly and children was studied. We found that ignoring the spatio-temporal behavioral activities of residents underestimated the actual exposure hazard of PM2.5 to residents. The risk of air pollution exposure was higher for the elderly than for other age groups. Within the aging group, a few elderly people had a higher risk of pollution exposure. The high exposure risk communities of the elderly were mainly located in the central and sub-center areas of the city, with a continuous distribution characteristic. No significant difference was found in the exposure risk of children compared to the other populations, but a few children were particularly exposed to pollution. Children\'s high-exposure communities were mainly located in suburban areas, with a discrete distribution. Compared with the traditional static PM2.5 exposure assessment, the dynamic assessment method proposed in this paper considers the high mobility of the urban population and air pollution. Thus, it can accurately reveal the actual risk of air pollution and identify areas and populations at high risk of air pollution, which in turn provides a scientific basis for proposing planning policies to reduce urban PM2.5 and improve urban spatial equity.
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  • 文章类型: Journal Article
    平衡选择被定义为一类选择性机制,其将多态性保持在中性下的预期之上。理论预测,平衡选择会减少人口分化,以FST衡量。然而,在不同种群中维持不同等位基因集的平衡选择机制可能会增加种群分化。为了解决平衡选择和人口分化之间的联系,我们调查了HLA基因的群体分化,这构成了人类平衡选择的最显著的例子。我们发现,HLA基因的单核苷酸多态性(SNP)的群体分化平均低于其他基因组区域的SNP。我们表明,这些结果需要使用计算来解释FST对等位基因频率的依赖性。然而,在一对密切相关的人群中,全基因组分化低的地方,HLA的分化高于其他基因组区域。在超显性选择的模拟中再现了HLA基因对最近不同的种群对的这种增加的种群分化,只要不同种群之间的纯合子的适应度不同。结果深入了解了在整个人群中平衡HLA基因选择的本质的可能的“分歧过度优势”机制。
    Balancing selection is defined as a class of selective regimes that maintain polymorphism above what is expected under neutrality. Theory predicts that balancing selection reduces population differentiation, as measured by FST. However, balancing selection regimes in which different sets of alleles are maintained in different populations could increase population differentiation. To tackle the connection between balancing selection and population differentiation, we investigated population differentiation at the HLA genes, which constitute the most striking example of balancing selection in humans. We found that population differentiation of single nucleotide polymorphisms (SNPs) at the HLA genes is on average lower than that of SNPs in other genomic regions. We show that these results require using a computation that accounts for the dependence of FST on allele frequencies. However, in pairs of closely related populations, where genome-wide differentiation is low, differentiation at HLA is higher than in other genomic regions. Such increased population differentiation at HLA genes for recently diverged population pairs was reproduced in simulations of overdominant selection, as long as the fitness of the homozygotes differs between the diverging populations. The results give insight into a possible \"divergent overdominance\" mechanism for the nature of balancing selection on HLA genes across human populations.
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  • 文章类型: Journal Article
    OBJECTIVE: Project Baseline is a seed bank that offers an unprecedented opportunity to examine spatial and temporal dimensions of microevolution during an era of rapid environmental change. Over the upcoming 50 years, biologists will withdraw genetically representative samples of past populations from this time capsule of seeds and grow them contemporaneously with modern samples to detect any phenotypic and molecular evolution that has occurred during the intervening time.
    METHODS: We carefully developed this living genome bank using protocols to enhance its experimental value by collecting from multiple populations and species across a broad geographical range in sites that are likely to be preserved into the future. Seeds are accessioned with site and population data and are stored by maternal line under conditions that maximize seed longevity. This open-access resource will be available to researchers at regular intervals to evaluate contemporary evolution.
    RESULTS: To date, the Project Baseline collection includes 100-200 maternal lines of each of 61 species collected from over 831 populations on sites that are likely to be preserved into the future across the United States (∼78,000 maternal lines). Our strategically designed collection circumvents some problems that can cloud the results of \"resurrection\" studies involving naturally preserved or existing seed collections that are available fortuitously.
    CONCLUSIONS: The resurrection approach can be coupled with long-established and newer techniques over the next five decades to elucidate genetic change and thereby vastly improve our understanding of temporal and spatial changes in phenotype and the evolutionary processes underlying it.
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  • 文章类型: Journal Article
    Landscape features notoriously affect spatial patterns of biodiversity. For instance, in dendritic ecological networks (such as river basins), dendritic connectivity has been proposed to create unique spatial patterns of biodiversity. Here, we compared genetic datasets simulated under a lattice-like, a dendritic and a circular landscape to test the influence of dendritic connectivity on neutral genetic diversity. The circular landscape had a level of connectivity similar to that of the dendritic landscape, so as to isolate the influence of dendricity on genetic diversity. We found that genetic diversity and differentiation varied strikingly among the three landscapes. For instance, the dendritic landscape generated higher total number of alleles and higher global Fst than the lattice-like landscape, and these indices also varied between the dendritic and the circular landscapes, suggesting an effect of dendricity. Furthermore, in the dendritic landscape, allelic richness was higher in highly connected demes (e.g. confluences in rivers) than in low-connected demes (e.g. upstream and downstream populations), which was not the case in the circular landscape, hence confirming the major role of dendricity. This led to bell-shaped distributions of allelic richness along an upstream-downstream gradient. Conversely, genetic differentiation (Fst ) was lower in highly than in low-connected demes (which was not observed in circular landscape), and significant patterns of isolation by distance (IBD) were also observed in the dendritic landscape. We conclude that in dendritic networks, the combined influence of dendricity and connectivity generates unique spatial patterns of neutral genetic diversity, which has implications for population geneticists and conservationists.
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  • 文章类型: Journal Article
    Detection of footprints of historical natural selection on quantitative traits in cross-sectional data sets is challenging, especially when the number of populations to be compared is small and the populations are subject to strong random genetic drift. We extend a recent Bayesian multivariate approach to differentiate between selective and neutral causes of population differentiation by the inclusion of habitat information. The extended framework allows one to test for signals of selection in two ways: by comparing the patterns of population differentiation in quantitative traits and in neutral loci, and by comparing the similarity of habitats and phenotypes. We illustrate the framework using data on variation of eight morphological and behavioral traits among four populations of nine-spined sticklebacks (Pungitius pungitius). In spite of the strong signal of genetic drift in the study system (average FST = 0.35 in neutral markers), strong footprints of adaptive population differentiation were uncovered both in morphological and behavioral traits. The results give quantitative support for earlier qualitative assessments, which have attributed the observed differentiation to adaptive divergence in response to differing ecological conditions in pond and marine habitats.
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