phenazines

吩嗪
  • 文章类型: Journal Article
    已知天然农药吩嗪-1-羧酸(PCA)缺乏韧皮部流动性,而甲霜灵是代表性的韧皮部系统性杀菌剂。为了赋予PCA韧皮部移动性并增强其抗真菌活性,通过将PCA与甲霜灵的活性结构N-酰基丙氨酸甲酯缀合,设计并合成了32种吩嗪-1-羧酸-N-苯丙氨酸酯缀合物。所有目标化合物通过1HNMR表征,13CNMR和HRMS。抗真菌评估结果表明,几种目标化合物对菌核病具有中等至有效的抗真菌活性。双极星索罗基尼亚,寄生疫霉,城疫霉菌。特别是,化合物F7对硬核链球菌表现出优异的抗真菌活性,EC50值为6.57µg/mL,优于甲霜灵。蓖麻系统中的韧皮部迁移率研究表明,目标化合物F1-F16具有良好的韧皮部迁移率。特别是,化合物F2表现出优异的韧皮部迁移率;蓖麻韧皮部汁液中化合物F2的含量为19.12μmol/L,是甲霜灵(3.56μmol/L)的6倍。不同pH培养溶液下的韧皮部迁移率测试验证了与“离子阱”效应相关的化合物的韧皮部易位。化合物F2在烟草植物中的分布进一步表明其在韧皮部中的兼性,向根尖生长点和根部表现出定向积累。这些结果为开发由外源化合物介导的韧皮部移动性杀真菌剂提供了有价值的见解。
    The natural pesticide phenazine-1-carboxylic acid (PCA) is known to lack phloem mobility, whereas Metalaxyl is a representative phloem systemic fungicide. In order to endow PCA with phloem mobility and also enhance its antifungal activity, thirty-two phenazine-1-carboxylic acid-N-phenylalanine esters conjugates were designed and synthesized by conjugating PCA with the active structure N-acylalanine methyl ester of Metalaxyl. All target compounds were characterized by 1H NMR, 13C NMR and HRMS. The antifungal evaluation results revealed that several target compounds exhibited moderate to potent antifungal activities against Sclerotinia sclerotiorum, Bipolaris sorokiniana, Phytophthora parasitica, Phytophthora citrophthora. In particular, compound F7 displayed excellent antifungal activity against S. sclerotiorum with an EC50 value of 6.57 µg/mL, which was superior to that of Metalaxyl. Phloem mobility study in castor bean system indicated good phloem mobility for the target compounds F1-F16. Particularly, compound F2 exhibited excellent phloem mobility; the content of compound F2 in the phloem sap of castor bean was 19.12 μmol/L, which was six times higher than Metalaxyl (3.56 μmol/L). The phloem mobility tests under different pH culture solutions verified the phloem translocation of compounds related to the \"ion trap\" effect. The distribution of the compound F2 in tobacco plants further suggested its ambimobility in the phloem, exhibiting directional accumulation towards the apical growth point and the root. These results provide valuable insights for developing phloem mobility fungicides mediated by exogenous compounds.
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  • 文章类型: Journal Article
    背景:使用Sternheimer染色法进行定性尿液分析是日本鉴定细菌尿的常用方法,但是缺乏研究其测试特征。在这项研究中,我们旨在研究Sternheimer染色对尿培养结果的敏感性和特异性,并将其与革兰氏染色的敏感性和特异性进行比较。我们的目标是确定Sternheimer染色在鉴定细菌尿中的有用性。
    方法:在2019年1月至2019年12月在Tenri医院急诊室获得尿液分析和尿液培养样本的986名年龄在16岁以上的患者中,有342名患者出现脓尿,定义为尿液样本中每立方毫米存在10个或更多的白细胞,纳入了之前未接受过抗菌治疗的患者.尿液培养物用于比较,以确定该患者组中Sternheimer和革兰氏染色的敏感性和特异性。阳性Sternheimer染色结果定义为细菌尿症≥(1+),将革兰氏染色定义为大功率(×1000)浸油≥1/1场。
    结果:使用尿液培养结果进行比较,Sternheimer染色的灵敏度为92.2%,特异性为48.5%,阳性似然比为1.79,阴性似然比为0.16.
    结论:Sternheimer染色是一种快速有效的方法,可以排除急诊科一组脓尿患者的菌尿。
    BACKGROUND: Qualitative urinalysis using the Sternheimer stain is a common method in Japan for identifying bacteriuria, but there is a lack of studies examining its test characteristics. In this study, we aimed to investigate the sensitivity and specificity of the Sternheimer stain for urine culture results and compare it with the sensitivity and specificity of the Gram stain. Our goal was to determine the usefulness of the Sternheimer stain in identifying bacteriuria.
    METHODS: Among 986 patients aged 16 years or older from whom samples for both urinalysis and urine culture were obtained at the emergency room of Tenri Hospital from January 2019 to December 2019, 342 patients with pyuria, defined as the presence of 10 or more white cells per cubic millimeter in a urine specimen, who had not received prior antimicrobial therapy were included. Urine cultures were used for comparison to determine the sensitivity and specificity of Sternheimer and Gram stain in this patient group. A positive Sternheimer stain result was defined as bacteriuria ≥ (1+), and that of Gram stain was defined as ≥ 1/1 field of high-power ( × 1000) oil immersion.
    RESULTS: Using urine culture results for comparison, the sensitivity of Sternheimer stain was 92.2%, the specificity was 48.5%, the positive likelihood ratio was 1.79, and the negative likelihood ratio was 0.16.
    CONCLUSIONS: Sternheimer stain is a rapid and useful method to exclude bacteriuria in a group of patients with pyuria in the emergency department.
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  • 文章类型: Journal Article
    癌症作为获得性遗传疾病是基于基因组本身和转录过程的变化。因此,在DNA水平上,寻找和设计能够有效和选择性抗癌作用的药物是有意义的。在这项研究中,我们使用基于分子动力学模拟的迭代方法来设计一种称为HASDI的高选择性DNA嵌入剂。为了证实其对DNA的选择性亲和力,我们进行了两个模拟实验:HASDI与EBNA1基因的DNA片段(靶向该基因的16个核苷酸对)的复合物和HASDI与KCNH2基因的随机DNA片段的复合物。分子动力学模拟在GROMACS2019软件包中进行。通过gmx_MMPBSA1.5.2计算结合能。进一步的分析是使用GROMACS的内置实用程序进行的,gmx_MMPBSA以及XMGRACE和Pymol1.8。因此,我们确定EBNA1-50nt/HASDI复合物在整个模拟轨迹中是稳定的。HASDI,由于存在根据特定的含氮碱基对修饰的接头,平均形成32个氢键和16个核苷酸对的序列。吩嗪环每2个碱基对稳定插层。在这样的复合物中,HASDI的均方根偏差在6.5µ的值附近波动,并且没有增加的趋势。结合自由能的计算值为-235.3±7.77kcal/mol。KCNH2-50nt/HASDI复合物,作为将设计结构嵌入人类基因组随机部分的一个例子,将其位置的稳定性维持在与EBNA1-50nt/HASDI复合物相当的水平。吩嗪环不断插入其原始位置,均方根偏差在一个值附近波动,尽管它有混乱变化的趋势。同时,这个复合物的特征是17-19个氢键,平均而言,结合自由能为-193.47±14.09kcal/mol。此外,DNA双链体在第4个接头区域有局部单核苷酸解链.根据氢键数量的显著减少,能量增益的减少,与目标EBNA1-50nt/HASDI复合物相比,KCNH2-50nt/HASDI复合物的DNA双链体特征的稳定性降低,我们设计的分子可以被认为是能够相对准确识别16个碱基对的潜在选择性DNA聚嵌入剂。
    Cancer as an acquired genetic disease is based on changes both in the genome itself and in transcription processes. Accordingly, it is at the DNA level that it makes sense to search for and design agents capable of effective and selective anticancer action. In this study, we used an iterative approach based on a molecular dynamics simulation to design a highly selective DNA-intercalating agent called HASDI. To confirm its selective affinity to DNA, we conducted two simulation experiments: HASDI in a complex with a DNA fragment of the EBNA1 gene (it targets 16 nucleotide pairs of this gene) and HASDI in a complex with a random DNA fragment of the KCNH2 gene. The molecular dynamics simulation was carried out in the GROMACS 2019 package. The binding energy was calculated by gmx_MMPBSA 1.5.2. The further analysis was performed using the built-in utilities of GROMACS, gmx_MMPBSA and also XMGRACE and Pymol 1.8. As a result, we determined that the EBNA1-50nt/HASDI complex was stable throughout the whole simulation trajectory. HASDI, due to the presence of a linker modified depending on a specific pair of nitrogenous bases, formed an average of 32 hydrogen bonds with a sequence of 16 nucleotide pairs. Phenazine rings were stably intercalated every 2 base pairs. The root-mean-square deviation of HASDI in such a complex fluctuated around the value of 6.5 Å and had no tendency to increase. The calculated value of the binding free energy was - 235.3 ± 7.77 kcal/mol. The KCNH2-50nt/HASDI complex, as an example of the intercalation of the designed structure into a random part of the human genome, maintained the stability of its position at a level comparable to the EBNA1-50nt/HASDI complex. The phenazine rings were constantly intercalated in their original positions, and the root-mean-square deviation fluctuated around one value, although it had a tendency to chaotic changes. At the same time, this complex was characterized by 17-19 hydrogen bonds, on average, and the binding free energy was - 193.47 ± 14.09 kcal/mol. Moreover, the DNA duplex had local single-nucleotide melting in the region of the 4th linker. According to a significant decrease in the number of hydrogen bonds, a decrease in energy gain, as well as a decrease in the stability of the DNA duplex characteristic of the KCNH2-50nt/HASDI complex compared to the target EBNA1-50nt/HASDI complex, the molecule we designed can be considered a potentially selective DNA polyintercalating agent capable of relatively accurate recognition of 16 base pairs.
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  • 文章类型: Journal Article
    吩嗪是最近在水性氧化还原液流电池中使用的一类新兴的有机化合物。一种有前途的大规模储能技术。通过基于密度泛函理论计算进行虚拟筛选,我们研究了在不同位置含有各种供电子或吸电子基团的水介质中〜100吩嗪衍生物的氧化还原电位。计算确定了应当用多个羟基官能化以便设计新的阳极电解液的关键位置。此处报道的联合实验计算方法指导我们开发一种具有较低氧化还原电位的新分子,作为水性氧化还原液流电池的稳定阳极电解液。
    Phenazines are an emerging class of organic compounds that have been recently utilized in aqueous redox flow batteries, a promising technology for large-scale energy storage. A virtual screening based on density functional theory calculations is used to investigate the redox potentials of around 100 phenazine derivatives in aqueous media containing various electron-donating or electron-withdrawing groups at different positions. The calculations identify the crucial positions that should be functionalized with multiple hydroxy groups to design new anolytes. The combined experimental-computational methodology reported herein guides the development of a new molecule with a record low reversible redox potential as a potential anolyte for aqueous redox flow batteries.
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  • 文章类型: Journal Article
    硫氰酸,铜绿假单胞菌产生的氧化还原活性吩嗪色素,抑制5-脂氧合酶(5-LOX)活性。然而,由于其产生超氧自由基和H2O2的能力,绿脓苷是否可以通过在活性位点结合来直接阻断酶活性仍然是一个问题。为了表征这种机制,我们进行了分子对接和分子动力学模拟,并进行了分子力学泊松-玻尔兹曼表面积(MMPBSA)结合能研究。研究结果表明,绿脓苷在5-LOX的活性位点是动态稳定的,其MMPBSA结合能(-84.720kJ/mol)与5-LOX标准抑制剂zileuton(-72.729kJ/mol)相当。使用其他三种吩嗪衍生物-1-羟基吩嗪的类似研究,吩嗪-1-羧酸和吩嗪-1-甲酰胺-也显示出令人鼓舞的结果。根据这些证据,我们假设作为概念的证明,通过直接结合在活性位点并阻断底物的酶催化,绿脓苷和这些吩嗪衍生物具有抑制5-LOX活性的潜力。考虑到5-LOX抑制剂在炎症性疾病如哮喘和类风湿性关节炎中的潜力,本研究的发现为吩嗪衍生物在针对5-LOX的基于结构的药物设计中的探索开辟了道路。由RamaswamyH.Sarma沟通。
    Pyocyanin, a redox-active phenazine pigment produced by Pseudomonas aeruginosa, inhibits 5-lipoxygenase (5-LOX) activity. However, whether pyocyanin can directly block the enzymatic activity by binding at the active site still remains a question because of its ability to produce superoxide radicals and H2O2. With the objective of characterizing this mechanism, we carried out molecular docking and molecular dynamics simulations and performed Molecular Mechanics Poisson-Boltzmann surface area (MMPBSA) binding energy studies. The results of the study revealed that pyocyanin is dynamically stable at the active site of 5-LOX and its MMPBSA binding energy (-84.720 kJ/mol) is comparable to that of the 5-LOX standard inhibitor zileuton (-72.729 kJ/mol). Similar studies using three other phenazine derivatives - 1-hydroxyphenazine, phenazine-1-carboxylic acid and phenazine-1-carboxamide - also showed encouraging results. In light of this evidence, we postulate as a proof of concept that pyocyanin and these phenazine derivatives have the potential to inhibit 5-LOX activity by directly binding at the active site and blocking enzymatic catalysis of the substrate. Considering the potential of 5-LOX inhibitors in inflammatory diseases such as asthma and rheumatoid arthritis, the findings of this study open up the exploration of phenazine derivatives in structure-based drug design against 5-LOX. Communicated by Ramaswamy H. Sarma.
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  • 文章类型: Journal Article
    蛋白激酶是具有许多生物学作用的一大类酶,并且许多与大量疾病有关。包括癌症和新型冠状病毒感染COVID-19。因此,开发选择性靶向每个激酶的化学探针是非常感兴趣的。用ATP竞争性抑制剂抑制蛋白激酶历来是最广泛使用的方法。然而,由于ATP位点的高度保守结构,真正的选择性化学探针的鉴定是具有挑战性的。在这次审查中,我们以Ser/Thr激酶CK2为例,强调了有效和选择性化学探针开发的历史挑战,以及该领域的最新进展和旨在克服这些问题的替代策略。用于CK2的方法可以应用于一系列蛋白激酶,以帮助发现化学探针,以进一步了解每种激酶的生物学。对药物开发具有广泛的影响。
    Protein kinases are a large class of enzymes with numerous biological roles and many have been implicated in a vast array of diseases, including cancer and the novel coronavirus infection COVID-19. Thus, the development of chemical probes to selectively target each kinase is of great interest. Inhibition of protein kinases with ATP-competitive inhibitors has historically been the most widely used method. However, due to the highly conserved structures of ATP-sites, the identification of truly selective chemical probes is challenging. In this review, we use the Ser/Thr kinase CK2 as an example to highlight the historical challenges in effective and selective chemical probe development, alongside recent advances in the field and alternative strategies aiming to overcome these problems. The methods utilised for CK2 can be applied to an array of protein kinases to aid in the discovery of chemical probes to further understand each kinase\'s biology, with wide-reaching implications for drug development.
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  • 文章类型: Journal Article
    5-Methyl-2-phenyl-2-hexenal (MPH) has been used as a flavoring agent. In the present study, we performed a subchronic toxicity study in male and female F344 rats with oral administration of MPH by gavage at 0, 8, 24 and 70 mg/kg body weight (BW)/day for 90 days. No mortality or clinical signs were observed during the experimental period. Body weight and food consumption for all treated groups of both sexes were essentially the same as for the respective control groups. Hematologic examination demonstrated significant decreases in monocyte counts for females given 24 and 70 mg/kg BW/day. However, these changes were not substantial and no related histopathological changes were observed, suggesting that these changes were not toxicologically significant. Among organ weights, the absolute and/or relative weights of testes and liver were significantly increased in the 70 mg/kg BW/day groups of males and females, respectively, but no related histopathological changes were observed, suggesting that these changes did not reflect adverse effects. In addition, no treatment-related histopathological changes were observed for any of the tissues examined. Based on the overall data, the no-observed-adverse-effect level (NOAEL) for MPH was determined to be 70 mg/kg BW/day, the highest dose tested, in both male and female rats.
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  • 文章类型: Journal Article
    BACKGROUND: Gram stain of cerebrospinal fluid (CSF) is widely used in the diagnosis of acute meningitis, however, it is often conducted in the laboratory, as only some hospitals have access to point-of-care Gram stain (PCGS). The purpose of this study was to demonstrate the clinical impact and utility of PCGS in diagnosing and treating both bacterial and aseptic meningitis in adults.
    METHODS: This was a hospital-based, retrospective observational study at a referral center in Okinawa, Japan. We reviewed the records of all patients aged 15 years or older who were admitted to the Division of Infectious Diseases between 1995 and 2015 and finally diagnosed with bacterial (n = 34) or aseptic meningitis (n = 97). For bacterial meningitis, we compared the treatments that were actually selected based on PCGS with simulated treatments that would have been based on the Japanese guidelines. For aseptic meningitis, we compared the rates of antibiotic use between real cases where PCGS was available and real cases where it was not.
    RESULTS: PCGS was the most precise predictor for differentiating between bacterial and aseptic meningitis (sensitivity 91.2%, specificity 98.9%), being superior in this regard to medical histories, vital signs and physical examinations, and laboratory data available in the emergency room (ER). In bacterial meningitis, PCGS reduced the frequency of meropenem use (1/34 = 3.0%) compared with simulated cases in which PCGS was not available (19/34 = 55.9%) (p< 0.001). In aseptic meningitis cases, the rate of antibiotic administration was lower when PCGS was used (38/97 = 39.2%) than when it was not (45/74 = 60.8%) (p = 0.006).
    CONCLUSIONS: PCGS of CSF distinguishes between bacterial and aseptic meningitis more accurately than other predictors available in the ER. Patients with bacterial meningitis are more likely to receive narrower-spectrum antimicrobials when PCGS is used than when it is not. PCGS of CSF thus can potentially suppress the empiric use of antimicrobials for aseptic meningitis.
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  • 文章类型: Journal Article
    BACKGROUND: Although Moraxella catarrhalis (M. catarrhalis) is a common cause of community-acquired pneumonia (CAP), studies investigating clinical manifestations of CAP due to M. catarrhalis (MC-CAP) in adults are limited. Since S. pneumoniae is the leading cause of CAP globally, it is important to distinguish between MC-CAP and CAP due to S. pneumoniae (SP-CAP) in clinical practice. However, no past study compared clinical characteristics of MC-CAP and SP-CAP by statistical analysis. We aimed to clarify the clinical characteristics of MC-CAP by comparing those of SP-CAP, as well as the utility of sputum Gram staining.
    METHODS: This retrospective study screened CAP patients aged over 20 years visiting or admitted to Okinawa Miyako Hospital between May 2013 and April 2018. Among these, we included patients whom either M. catarrhalis alone or S. pneumoniae alone was isolated from their sputum by bacterial cultures.
    RESULTS: We identified 134 MC-CAP and 130 SP-CAP patients. Although seasonality was not observed in SP-CAP, almost half of MC-CAP patients were admitted in the winter. Compared to those with SP-CAP, MC-CAP patients were older (p < 0.01) and more likely to have underlying pulmonary diseases such as asthma and bronchiectasis (p < 0.01). Approximately half of asthmatic MC-CAP and SP-CAP patients had asthma attacks. Although winter is an influenza season in Japan, co-infection with influenza virus was less common in MC-CAP compared to SP-CAP patients (3% vs. 15%, p < 0.01). Bronchopneumonia patterns on X-ray, as well as bronchial wall thickening, bilateral distribution, and segmental pattern on CT were more common in MC-CAP patients than in SP-CAP patients (p < 0.01). Sputum Gram stain was highly useful method for the diagnosis in both MC-CAP and SP-CAP (78.4% vs. 89.2%), and penicillins were most frequently chosen as an initial treatment for both pneumonias.
    CONCLUSIONS: This is the first study to show that MC-CAP occurred in older people compared to SP-CAP, influenza virus co-infection was less common in MC-CAP than SP-CAP, and that MC-CAP frequently caused asthma attacks. Gram stain contributed for the appropriate treatment, resulting in conserving broad-spectrum antibiotics such as cephalosporins and fluoroquinolones in both MC-CAP and SP-CAP patients.
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  • 文章类型: Journal Article
    OBJECTIVE: The aim of this study was to evaluate the diagnostic value of renal pelvis urine Gram staining (RPUGS) in predicting postoperative fever and renal stone culture (RSC) positivity in percutaneous nephrolithotomy (PCNL).
    METHODS: Totally 141 consecutive patients undergoing PCNL for renal stone were included between January 2018 and December 2019. The RPUGS and renal pelvis urine culture (RPUC) were performed using urine sample from renal collecting system, while RSC was performed using stone fragments. Patients were divided into two groups as Group 1 (n = 119) without postoperative fever (< 38 °C) and Group 2 (n = 22) with postoperative fever (≥ 38 °C). Stone culture and Gram staining models were created for predicting postoperative fever using constant covariates of the presence of residual stone, hydronephrosis, and stone burden.
    RESULTS: A significantly higher number of patients in Group 2 had RPUGS, RSC, and RPUC positivity (p < 0.001, for each). The sensitivity, specificity, positive predictive value, and negative predictive value of RPUGS in predicting postoperative fever were 72.7%, 89.9%, 57.1%, and 94.7%, respectively. It was observed that both models had similar predictive values and diagnostic performances. Although RSC and RPUGS had a similar diagnostic value in predicting postoperative fever in univariable analysis, both were found to be independent predictors in multivariable analysis (OR: 10.6, 95% CI 4.07-27.9, p < 0.001 and OR: 15.0, 95% CI 5.4-41.2, p < 0.001, respectively).
    CONCLUSIONS: In conclusion, RPUGS is as effective as RSC in predicting fever after PCNL. We recommend RPUGS during PCNL to manage post-PCNL infectious complications.
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