nonsense-mediated mRNA decay

无义介导的 mRNA 衰变
  • 文章类型: Case Reports
    背景:ADP-核糖丝氨酸水解酶的基因变异,也称为ADP-核糖水解酶样2(ADPRS或ADPRLH2;OMIM:610624),可导致应激诱导的儿童期发作的神经变性,伴有不同的共济失调和癫痫发作(CONDSIAS,OMIM:618170),一种超罕见的神经退行性常染色体隐性疾病。ADPRS编码ADP-核糖水解酶3,可去除聚(ADP-核糖)聚合物,其翻译后添加发生在压力条件下。病例介绍:呼吸道感染后,一名30个月大的男性患者,步态不稳定,没有外部帮助就无法行走。神经系统检查显示急性小脑共济失调,脑电图结果异常,脑磁共振成像显示小脑沟轻度增宽。实验室检查显示促甲状腺激素水平下降,血浆乳酸和血清心肌酶水平升高。脑脊液葡萄糖试验阳性。发病四个月后,病人死于突然抽搐。使用全外显子组测序,我们鉴定了两个新的复合杂合ADPRS变体:NM_017825.3:c.580C>T(p。Gln194Ter)和NM_017825.3:c.803-1G>A.RNA测序表明前一种突变可能导致无义介导的mRNA衰减。发现c.803-1G>A变体是导致内含子5转录保留的剪接位点突变。根据美国医学遗传学和基因组学学院的指导方针,这两种变异被归类为致病性。结论:我们首次报道了ADPRS的两个复合杂合变体的存在,这导致了CONDSIAS。
    Background: Gene variants of ADP-ribosylserine hydrosylase, also known as ADP-ribosylhydrolase-like 2 (ADPRS or ADPRLH2; OMIM: 610624), can cause stress-induced childhood-onset neurodegeneration with variable ataxia and seizures (CONDSIAS, OMIM: 618170), an ultra-rare neurodegenerative autosomal recessive disorder. ADPRS encodes ADP-ribosylhydrolase 3, which removes poly(ADP-ribose) polymers, whose posttranslational addition occurs under stressful conditions. Case Presentation: After a respiratory tract infection, a 30-month-old male patient presented with unsteady gait that rendered walking impossible without external help. Neurological examination revealed acute cerebellar ataxia, electroencephalogram results were abnormal, and brain magnetic resonance imaging revealed slightly widened cerebellar sulci. Laboratory tests showed decreased levels of thyroid-stimulating hormone, and increased levels of plasma lactic acid and serum cardiac enzymes. The cerebrospinal fluid glucose test was positive. Four months after onset, the patient died of sudden convulsions. Using whole exome sequencing, we identified two novel compound heterozygous ADPRS variants: NM_017825.3:c.580C>T (p.Gln194Ter) and NM_017825.3:c.803-1G>A. RNA sequencing indicated that the former mutation might cause nonsense-mediated mRNA decay. The c.803-1G>A variant was found to be a splice-site mutation that leads to the transcriptional retention of intron 5. According to the guidelines of the American College of Medical Genetics and Genomics, the two variants were classified as pathogenic. Conclusion: We present the first report of the existence of two compound heterozygous variants of ADPRS, which leads to CONDSIAS.
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  • 文章类型: Case Reports
    据报道,含有8(TRIM8)基因的三方基序中的杂合截短变体会导致癫痫性脑病,有和没有蛋白尿。最近的一项研究表明缺乏TRIM8蛋白表达,细胞因子信号转导抑制因子1(SOCS1)过表达,在患有TRIM8变体的患者的足细胞和小管中,患者患有癫痫性脑病和局灶节段肾小球硬化(FSGS)。迄今为止,没有描述出现肾病综合征但无神经系统表现的TRIM8变异患者.
    一名8岁女孩出现肾病综合征,没有癫痫或发育迟缓。她的肾活检标本显示FSGS和远端小管的囊性扩张。全外显子组测序在TRIM8的C端编码部分中发现了一种新的从头杂合变体(c.1461C>A),导致提前终止密码子(p.Tyr487*).逆转录聚合酶链反应使用外周血单核细胞鉴定突变等位基因的mRNA序列,这证实了从无义介导的mRNA衰变中逃脱。免疫荧光研究显示,肾小球和肾小管细胞中缺乏TRIM8表达,远端小管囊性扩张。免疫组织化学研究显示SOCS1在肾小球和肾小管细胞中过表达。
    我们报道了一名FSGS患者,与从头杂合TRIM8变体相关,没有任何神经表现.我们的结果扩展了TRIM8变体的临床表型谱。
    Heterozygous truncating variants in the Tripartite motif containing 8 (TRIM8) gene have been reported to cause epileptic encephalopathy, both with and without proteinuria. A recent study showed a lack of TRIM8 protein expression, with suppressor of cytokine signaling 1 (SOCS1) overexpression, in podocytes and tubules from a patient with a TRIM8 variant, who presented with epileptic encephalopathy and focal segmental glomerulosclerosis (FSGS). To date, no patients with TRIM8 variants who presented with nephrotic syndrome but without neurological manifestations have been described.
    An 8-year-old girl presented with nephrotic syndrome, without epilepsy or developmental delay. Her kidney biopsy specimens showed FSGS and cystic dilatations of the distal tubules. Whole-exome sequencing identified a novel de novo heterozygous variant in the C-terminal encoding portion of TRIM8 (c.1461C > A), resulting in a premature stop codon (p.Tyr487*). Reverse transcription-polymerase chain reaction using peripheral blood mononuclear cells identified the mRNA sequence of the mutant allele, which confirmed an escape from nonsense-mediated mRNA decay. Immunofluorescence studies showed a lack of TRIM8 expression in glomerular and tubular cells and cystic dilatation of distal tubules. Immunohistochemical studies showed overexpression of SOCS1 in glomerular and tubular cells.
    We reported a patient with FSGS, associated with a de novo heterozygous TRIM8 variant, without any neurological manifestations. Our results expanded the clinical phenotypic spectrum of TRIM8 variants.
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  • 文章类型: Case Reports
    Marfan syndrome (MFS) is a common autosomal dominant inherited disease, and the occurrence rate is around 0.1-0.2‰. The causative variant of FNB1 gene accounts for approximately 70-80% of all MFS cases. In this study, we found a heterozygous c.3217G > T (p.Glu1073*) nonsense variant in the FBN1 gene. This finding extended the variant spectrum of the FBN1 gene and will provide a solution for patients to bear healthy offspring by preimplantation genetic testing or prenatal diagnosis.
    The patient was treated due to tachycardia during excitement in a hospital. Echocardiography showed dilatation of the ascending aorta and main pulmonary artery, mitral regurgitation (mild), tricuspid regurgitation (mild), and abnormal left ventricular filling. Electrocardiograph showed sinus rhythm. In addition, flutters of shadows in front of his eyes and vitreous opacity were present in the patient. Genomic DNA was extracted from peripheral blood samples from members of the family and 100 unrelated controls. Potential variants were screened out by next-generation sequencing and confirmed by MLPA & Sanger sequencing. Real-time fluorescence quantitative PCR (RT-qPCR) was performed to detect the relative mRNA quantitation in the patient. A heterozygous nonsense variant c.3217G > T of the FBN1 gene, which resulted in p. Glu1073Term, was identified in both patients. Only wild type bases were found in the cDNA sequence of the patient. Real-time fluorogenic quantitative PCR results showed that the relative expression level of FBN1 cDNA in the patient was only about 21% compared to that of normal individuals. This variant c.3217G > T of the FBN1 gene introduces a Stop codon in the cb-EGF12 domain. We speculated that a premature translational-termination codon (PTC) was located in the mRNA and the target mRNA was disintegrated through a process known as nonsense-mediated mRNA decay (NMD), which led to a significant decrease of the fibrillin-1 protein, eventually causing clinical symptoms in the patient.
    In this study, we found a heterozygous c.3217G > T (p.Glu1073*) nonsense variant in the FBN1 gene, which eventually led to Marfan syndrome in a Chinese family.
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