methylation profiling

甲基化谱
  • 文章类型: Letter
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  • 文章类型: Journal Article
    背景:原发性脊髓肿瘤,尤其是原发性多形性脊髓胶质母细胞瘤(PSC-GBM),非常罕见,占所有脊柱肿瘤的不到1.5%。他们的不频繁和积极但不典型的表现使诊断具有挑战性。在不确定的情况下,组织诊断的手术方法通常是最佳的。
    方法:一名76岁男性,临床病史进展迅速,肢体无力恶化,尿潴留,和周期性大便失禁以及神经轴成像的弥漫性变化。病人,最初诊断为亚急性多发性神经病,接受了多轮类固醇和静脉注射免疫球蛋白治疗,但临床无改善。活检组织的组织病理学检查得出了梭形细胞肿瘤的初步诊断。在作者机构对所有神经病理学标本常规进行下一代测序(NGS),在困难的情况下进行甲基化分析。最终,NGS和甲基化分析结果对于GBM的综合最终诊断至关重要。
    结论:PSC-GBM是一种罕见但高度侵袭性的肿瘤。长时间的背痛,神经快速衰退,影像学改变需要考虑病灶活检以进行精确的疾病表征。在不确定的情况下,NGS已被证明对临床澄清和诊断非常有价值,强调其对于指导适当治疗策略的综合诊断的重要性。
    BACKGROUND: Primary spinal cord tumors, especially primary spinal cord glioblastoma multiforme (PSC-GBM), are exceptionally rare, accounting for less than 1.5% of all spinal tumors. Their infrequency and aggressive yet atypical presentation make diagnosis challenging. In uncertain cases, a surgical approach for tissue diagnosis is often optimal.
    METHODS: A 76-year-old male presented with a rapidly progressing clinical history marked by worsening extremity weakness, urinary retention, and periodic fecal incontinence alongside diffuse changes on neuraxis imaging. The patient, in whom subacute polyneuropathy was initially diagnosed, received multiple rounds of steroids and intravenous immunoglobulin without clinical improvement. Histopathological review of the biopsy tissue yielded an initial diagnosis of spindle cell neoplasm. Next-generation sequencing (NGS) is done routinely on all neuropathology specimens at the authors\' institution, and methylation profiling is pursued in difficult cases. Ultimately, NGS and methylation profiling results were essential to an integrated final diagnosis of GBM.
    CONCLUSIONS: PSC-GBM is a rare but highly aggressive occurrence of this tumor. Prolonged back pain, rapid neurological decline, and imaging changes warrant the consideration of lesional biopsy for precise disease characterization. In inconclusive cases, NGS has proved invaluable for clinical clarification and diagnosis, underscoring its importance for integrated diagnoses in guiding appropriate treatment strategies.
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  • 文章类型: Journal Article
    结节性筋膜炎通常是一种良性病变,其遗传特征是泛素特异性蛋白酶6(USP6)重排。我们介绍了一个10岁的男孩,在右胸壁上有1.5周的无痛性肿块,被切除了。一种具有明显多态性的组织形态学恶性肿瘤,非典型有丝分裂图,并观察到肌样免疫表型。甲基化谱与结节性筋膜炎一致,荧光原位杂交证实了USP6重排。使用ArcherFusionPlex(肉瘤面板)和RNA测序,胶原蛋白,VI型,随后鉴定了α2(COL6A2)-USP6基因融合体。此外,DNA聚类分析也显示与结节性筋膜炎相匹配。在22个月的随访中,无复发或转移。总之,我们描述了一种临床上良性的,具有肌样免疫表型的组织形态学恶性间充质肿瘤,以及与结节性筋膜炎一致的遗传和表观遗传特征。在这种情况下,分子分析是一个有用的辅助手段,以避免不必要的过度治疗。
    Nodular fasciitis is usually a benign lesion genetically characterized by ubiquitin-specific protease 6 (USP6) rearrangements. We present a case of a 10-year-old boy with a 1.5-week history of a painless mass on the right chest wall, which was excised. A histomorphologically malignant tumor with pronounced pleomorphism, atypical mitotic figures, and a myoid immunophenotype was observed. The methylation profile was consistent with nodular fasciitis and fluorescence in situ hybridization confirmed USP6 rearrangement. Using Archer Fusion Plex (Sarcoma Panel) and RNA sequencing, a collagen, type VI, alpha 2 (COL6A2)-USP6 gene fusion was subsequently identified. Furthermore, DNA clustering analysis also showed a match with nodular fasciitis. During the follow-up of 22 months, no recurrence or metastasis occurred. In conclusion, we describe a clinically benign, histomorphologically malignant mesenchymal neoplasm with a myoid immunophenotype, and a genetic and epigenetic profile consistent with nodular fasciitis. In such cases, molecular analysis is a useful adjunct to avoid unnecessary overtreatment.
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  • 文章类型: Case Reports
    High-grade neuroepithelial tumor with BCOR alteration (HGNET BCOR) has been recently classified as a new category of tumors among those previously known as PNET. They are molecularly characterized by the mutation of the BCOR gene, a corepressor of BCL6 a gene (which has an important role in immune responses). Only case reports and very small series have been published so far; therefore, their behavior and management are still under investigation. The goal of the present case-based review is to provide a summary about the state of the art on these tumors.
    The pertinent review has been reviewed, and an exemplary case has been reported (15-month-old boy with large HGNET BCOR of the left cerebellopontine angle). So far, 24 cases have been described, with a 5.5 mean age at diagnosis and a 1.4 male/female ratio. The cerebellar hemisphere is the more frequently involved region. No metastases are usually detected at diagnosis, though they are common in case of tumor recurrence. There are no specific radiological or pathological features to differentiate HGNET BCOR from other brain malignant neuroepithelial tumors so that the differential diagnosis is obtained by DNA methylation profiling. The management possibly relies on surgery and (high dose) chemotherapy and radiotherapy but without a dedicated protocol yet. The overall survival after 48-month follow-up is 50%. A gross total resection, which is mandatory for a better outcome, is achievable in the majority of cases.
    The clinical research on HGNET BCOR is just at the beginning. New targets and wide-ranging clinical trials are needed to get an optimal management.
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