high-throughput

高通量
  • 文章类型: Journal Article
    21世纪的许多技术进步依赖于具有增强性能的新型材料的创造;人们越来越依赖可以优化以满足多种功能的材料。为了有效节省时间并满足各种应用的要求,高通量和组合方法越来越多地用于探索和设计优质材料。其中,梯度薄膜沉积技术是目前最成熟、应用最广泛的高通量材料库制备技术之一。本文综述了磁控溅射制备梯度薄膜沉积的最新进展,多弧离子镀,电子束蒸发,增材制造,和化学浴沉积,为读者提供对这一研究领域的基本理解。首先,重点介绍了梯度薄膜的高通量合成方法。随后,我们介绍了组合膜的特点,包括微观结构,氧化,腐蚀试验,和机械性能。接下来,讨论了用于评估这些性能的筛选方法。此外,我们深入研究了组合膜高通量制备和表征技术的局限性。最后,我们提供总结并提供我们的观点。
    Numerous technological advancements in the 21st century depend on the creation of novel materials possessing enhanced properties; there is a growing reliance on materials that can be optimized to serve multiple functions. To efficiently save time and meet the requirements of diverse applications, high-throughput and combinatorial approaches are increasingly employed to explore and design superior materials. Among them, gradient thin-film deposition is one of the most mature and widely used technologies for high-throughput preparation of material libraries. This review summarizes recent progress in gradient thin-film deposition fabricated by magnetron sputtering, multi-arc ion plating, e-beam evaporation, additive manufacturing, and chemical bath deposition, providing readers with a fundamental understanding of this research field. First, high-throughput synthesis methods for gradient thin films are emphasized. Subsequently, we present the characteristics of combinatorial films, including microstructure, oxidation, corrosion tests, and mechanical properties. Next, the screening methods employed for evaluating these properties are discussed. Furthermore, we delve into the limitations of high-throughput preparation and characterization techniques for combinatorial films. Finally, we provide a summary and offer our perspectives.
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  • 文章类型: Comparative Study
    背景:微生物疾病,特别源自病毒是全世界人类死亡的主要原因。当前的COVID-19大流行就是一个很好的例子,病毒与人类相互作用的动力学仍未完全理解,使其治疗成为反复试验的案例。科学家们正在努力制定一项战略来控制这场大流行一年多,这揭示了人们对病毒如何在人体中生长和繁殖的缺乏了解。
    方法:本文介绍了作者对计算工具用于深度学习和理解宿主-微生物交互的适用性的观点。疾病进展和管理,耐药性和免疫调节通过计算机方法,可以帮助有效和选择性的药物开发。本文总结了近五年来的进展。在主要数据库中发表和索引的研究被纳入审查。
    结果:计算系统生物学在生物学和数学的界面上起作用,并打算使用计算工具解开生物系统与物种间和物种内动力学之间的复杂机制,以及在算法上开发的高通量技术,网络和复杂的连接来模拟细胞生物过程。
    结论:计算策略和建模整合并优先考虑微生物-宿主相互作用,并可以预测微调减弱的条件。从有效的药物设计和微调治疗干预措施的角度来看,这些微生物-宿主相互作用和工作机制很重要。
    BACKGROUND: Microbial diseases, specifically originating from viruses are the major cause of human mortality all over the world. The current COVID-19 pandemic is a case in point, where the dynamics of the viral-human interactions are still not completely understood, making its treatment a case of trial and error. Scientists are struggling to devise a strategy to contain the pandemic for over a year and this brings to light the lack of understanding of how the virus grows and multiplies in the human body.
    METHODS: This paper presents the perspective of the authors on the applicability of computational tools for deep learning and understanding of host-microbe interaction, disease progression and management, drug resistance and immune modulation through in silico methodologies which can aid in effective and selective drug development. The paper has summarized advances in the last five years. The studies published and indexed in leading databases have been included in the review.
    RESULTS: Computational systems biology works on an interface of biology and mathematics and intends to unravel the complex mechanisms between the biological systems and the inter and intra species dynamics using computational tools, and high-throughput technologies developed on algorithms, networks and complex connections to simulate cellular biological processes.
    CONCLUSIONS: Computational strategies and modelling integrate and prioritize microbial-host interactions and may predict the conditions in which the fine-tuning attenuates. These microbial-host interactions and working mechanisms are important from the aspect of effective drug designing and fine- tuning the therapeutic interventions.
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  • 文章类型: Case Reports
    这项研究的目的是分析由流感嗜血杆菌引起的急性脓胸儿童的临床资料,并通过文献复习探讨本病的诊断和治疗方法,以提高临床对本病的认识。
    杭州师范大学附属医院儿科收治一名6岁女性急性流感嗜血杆菌脓胸,杭州,中国。胸膜穿刺液原来是黄色浑浊脓液,根据胸腔积液的分类诊断为脓胸。高通量测序显示流感嗜血杆菌的存在。经过综合治疗,包括抗生素,闭式胸腔引流,胸膜内注射尿激酶,胸腔积液被吸收和排出。Pubmed中的系统文献检索,Embase,Scopus,CNKI,万方,和VIP中文数据库显示,没有一例由H型流感引起并接受尿激酶治疗的儿童急性脓胸。
    治疗期间无支气管胸膜瘘和张力性气胸。出院后一个月,胸部计算机断层扫描(CT)显示胸膜无增厚,肺功能正常。
    儿童肺炎在症状初步改善后恶化,这是一个需要进一步医疗护理的问题。胸腔积液病原体高通量测序可提高检出率。本研究表明,胸腔闭式引流联合胸膜腔内注射尿激酶是治疗儿童流感嗜血杆菌脓胸的有效方法。
    UNASSIGNED: The purpose of this study is to analyze the clinical data of a child with acute empyema caused by Haemophilus influenzae, and to investigate the diagnosis and treatment of this disease through literature review to improve the clinical understanding of this kind of disease.
    UNASSIGNED: A 6-year-old female with acute H. influenzae empyema was treated at the Department of Pediatrics of The Affiliated Hospital of Hangzhou Normal University, Hangzhou, China. The pleural puncture fluid turned out to be yellow turbid pus, and the pleural effusion was diagnosed as empyema according to the classification of pleural effusions. High-throughput sequencing revealed the presence of H. influenzae. After comprehensive treatment, including antibiotics, closed pleural drainage, and intrapleural injection of urokinase, the pleural effusion was absorbed and discharged. A systematic literature search in Pubmed, Embase, Scopus, CNKI, Wanfang, and VIP Chinese databases revealed no cases of acute empyema in children caused by H. influenza and treated with urokinase.
    UNASSIGNED: There was no bronchopleural fistula and tension pneumothorax during the treatment. One month after discharge, chest computed tomography (CT) revealed no pleural thickening and normal pulmonary function.
    UNASSIGNED: Pneumonia in the child worsened after an initial improvement of symptoms, which is an issue that requires further medical attention. High-throughput sequencing of pathogens in pleural effusion can improve the detection rate. This study indicated that closed pleural drainage combined with intrapleural injection of urokinase is an effective treatment for H. influenzae empyema in children.
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  • 文章类型: Journal Article
    OBJECTIVE: To systematically review the literature regarding the microbiota composition in various peri-implant conditions as analyzed by 16S rRNA gene sequencing methods.
    METHODS: Electronic searches were conducted at MEDLINE/PubMed, Scopus, Embase, ScienceDirect and Web of Science databases looking for articles published up to April 2020. Observational prospective investigations were considered with systemically healthy patients and that had presented the description of the microbiota composition of peri-implantitis (PI), peri-implant mucositis (PM) and/or health implants (HI) by using 16S rRNA gene sequencing analysis were considered eligible.
    RESULTS: From 1,380 titles found, 8 studies were considered for qualitative analysis. One article was excluded due to high risk of bias, remaining 7 studies for descriptive analysis. In 6 out of 7 studies the PI microbiota was reported as being in relative abundance and variety though with a different composition from those with HI. There was no consensus regarding which condition had more diversity. The main observed phyla among PI were Firmicutes, Bacteroidetes, Actinobacteria, Fusobacteria and Spirochaetes, while the genera were mainly Actinomyces, Eubacterium, Fusobacterium, Mogibacterium, Moraxella, Treponema and Porphyromonas. Comparisons between PI and PM microbiota showed conflicting results: one study suggested that PI has greater bacterial diversity; another study reported the opposite result, while another investigation found similar variety for both conditions.
    CONCLUSIONS: The microbiota of peri-implant conditions have been reported as distinct, although the available literature presents discrepancies. Nonetheless, considering the findings in most studies, it can be suggested that the relative abundance of microbiota and bacterial diversity increased with the progress of peri-implant disease.
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  • 文章类型: Systematic Review
    Background: The current prognostication of patient survival after surgery for colorectal liver metastases is based on clinical characteristics, but low accuracy makes it difficult to guide treatment for the individual patient. Rapidly evolving technologies have led to the expectation that biomarkers will be able to outperform the current clinical scoring systems and provide more effective personalised treatment. Two main topics prevail in cancer treatment, namely the role of the immune system and the prediction and prognostication by application of high-throughput methodology. The aim of this review is to examine the evidence for prognostic immunological and molecular markers studied in tumour tissue obtained at surgical resection for colorectal liver metastases. Methods: First we analysed immunophenotypical protein markers, that are mainly studied by immunohistochemistry. Second, we review molecular markers by analysing high-throughput studies on tumour mRNA and microRNA expression. Results: CD3, CD4, and CD8 are the most frequently studied protein markers. High intra-tumoural CD3+ T cell infiltration and low CXCR4 expression have the best association with favourable patient survival. Studies that analysed microRNA or mRNA expression data showed very little overlap in prognostic genes. Conclusions: Patient prognostication after surgery for colorectal liver metastases by analysing the immune system remains difficult. Current data are based on diverse and heterogeneous patient populations which prohibits drawing firm conclusions.
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  • 文章类型: Journal Article
    Lower alkyl acrylate monomers include methyl-, ethyl-, n-butyl-, and 2-ethylhexyl acrylate. These acrylates are used in the manufacture of acrylic polymers and copolymers for plastics, food packaging, adhesives, and cosmetic formulations. Although there is limited potential for human environmental exposure, occupational exposure can occur via inhalation and dermal contact. Recently, new genotoxicity data have been generated, along with in silico and in vitro read-cross analyses, for these acrylates. The availability of high-throughput screening (HTS) data through the ToxCast™/Tox21 databases allows for consideration of computational toxicology and organization of these data according to the ten key characteristics of carcinogens. Therefore, we conducted a comprehensive review to evaluate the mechanistic, toxicokinetic, animal, and human data, including HTS data, for characterizing the potential carcinogenicity, mutagenicity, and genotoxicity of these acrylates. Toxicokinetic data demonstrate that these acrylates are metabolized rapidly by carboxylesterase hydrolysis and conjugation with glutathione. HTS data demonstrated an overall lack of bioactivity in cancer-related pathways. Overall, the genotoxicity and mutagenicity data support a cytotoxic, non-genotoxic mechanism for these acrylates. Cancer bioassay studies conducted by the oral, dermal, and inhalation routes in animal models with these acrylates did not show any increase in tumor incidence, with two exceptions. At high doses, and secondary to chronic site-of-contact irritation and corrosion, rodent forestomach tumors were induced by oral gavage dosing with ethyl acrylate, and skin tumors were observed following chronic dermal dosing with 2-ethylhexyl acrylate in C3H/HeJ inbred mice (a strain with deficiencies in wound healing), but not in the outbred NMRI strain. For both dermal and forestomach cancers, tumorigenesis is secondary to high doses and long-term tissue damage, shown to be reversible. With evidence that these chemicals are not genotoxic, and that they cause forestomach and dermal tumors through chronic irritation and regenerative proliferation mechanisms, these acrylates are unlikely to pose a human cancer hazard.
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  • 文章类型: Journal Article
    遗传编码的荧光报道分子的使用允许加速微生物生物过程的初始优化步骤。这些报道分子可用于确定特定启动子的表达水平,不仅是特定蛋白质的合成,还包括细胞内代谢物的含量。因此,蛋白质/代谢物的水平与荧光信号成比例。通过这种方式,蛋白质/代谢物的平均表达谱可以以高通量非侵入性的方式确定,允许快速识别最佳生产者。事实上,不同类型的记者系统可用,以及允许在线记录荧光信号的特定培养装置。细胞间变异性是另一个重要的现象,可以整合到筛选程序中,以选择更有效的微生物细胞工厂。
    The use of genetically encoded fluorescent reporters allows speeding up the initial optimization steps of microbial bioprocesses. These reporters can be used for determining the expression level of a particular promoter, not only the synthesis of a specific protein but also the content of intracellular metabolites. The level of protein/metabolite is thus proportional to a fluorescence signal. By this way, mean expression profiles of protein/metabolites can be determined non-invasively at a high-throughput rate, allowing the rapid identification of the best producers. Actually, different kinds of reporter systems are available, as well as specific cultivation devices allowing the on-line recording of the fluorescent signal. Cell-to-cell variability is another important phenomenon that can be integrated into the screening procedures for the selection of more efficient microbial cell factories.
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