glycosyltransferase

糖基转移酶
  • 文章类型: Journal Article
    背景:尽管免疫疗法在治疗膀胱癌(BLCA)方面显示出巨大的潜力,BLCA的总体预后和免疫治疗应答率仍不理想.
    方法:我们通过分析210种糖基转移酶相关基因,对BLCA患者的糖基转移酶表达模式进行了广泛的评估。随后,我们建立了这些糖基转移酶模式之间的相关性,预后,和肿瘤微环境(TME)表型。为了提供个性化的患者评估,我们开发了一个准确预测预后的糖基转移酶风险评分,TME表型,和分子亚型。重要的是,我们开发了一个RNA-seq队列,命名为湘雅队列,来验证我们的结果。
    结果:确定了两种不同的糖基转移酶表达模式,对应于发炎和非发炎的TME表型,并证明了预测预后的潜力。我们开发并验证了在TCGA-BLCA队列中准确预测个体患者预后的综合风险评分。此外,我们构建了一个列线图,将风险评分与几个关键临床因素相结合.重要的是,此风险评分已在外部队列中成功验证,包括湘雅队列和GSE48075。此外,在TCGA-BLCA和湘雅队列中,我们发现该风险评分与肿瘤浸润淋巴细胞呈正相关,提示风险评分较高的患者表现出发炎的TME表型,并且对免疫治疗的反应更敏感.最后,我们观察到高和低风险评分组与BLCA的腔和基底亚型一致,分别,根据分子亚型,进一步验证风险评分在TME中的作用。
    结论:糖基转移酶模式在BLCA中表现出不同的TME表型。我们的综合风险评分为预后预测和评估免疫治疗疗效提供了一种有希望的方法。为精准医学提供有价值的指导。
    BACKGROUND: Although immunotherapy shows tremendous potential in the treatment of bladder cancer (BLCA), the overall prognosis and response rates to immunotherapy in BLCA remain suboptimal.
    METHODS: We performed an extensive evaluation of glycosyltransferase expression patterns in BLCA patients by analyzing 210 glycosyltransferase-related genes. Subsequently, we established correlations between these glycosyltransferase patterns, prognosis, and tumor microenvironment (TME) phenotypes. To offer personalized patient assessments, we developed a glycosyltransferase risk score that accurately predicts prognosis, TME phenotypes, and molecular subtypes. Importantly, we developed a RNA-seq cohort, named Xiangya cohort, to validate our results.
    RESULTS: Two distinct patterns of glycosyltransferase expression were identified, corresponding to inflamed and noninflamed TME phenotypes, and demonstrated the potential to predict prognosis. We developed and validated a comprehensive risk score that accurately predicted individual patient prognosis in the TCGA-BLCA cohort. Additionally, we constructed a nomogram that integrated the risk score with several key clinical factors. Importantly, this risk score was successfully validated in external cohorts, including the Xiangya cohort and GSE48075. Furthermore, we discovered a positive correlation between this risk score and tumor-infiltrating lymphocytes in both the TCGA-BLCA and Xiangya cohorts, suggesting that patients with a higher risk score exhibited an inflamed TME phenotype and were more responsive to immunotherapy. Finally, we observed that the high and low risk score groups were consistent with the luminal and basal subtypes of BLCA, respectively, providing further validation of the risk score\'s role in the TME in terms of molecular subtypes.
    CONCLUSIONS: Glycosyltransferase patterns exhibit distinct TME phenotypes in BLCA. Our comprehensive risk score provides a promising approach for prognostic prediction and assessment of immunotherapy efficacy, offering valuable guidance for precision medicine.
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  • 文章类型: Journal Article
    蒽环类药物是一类重要的天然抗肿瘤药物。它们具有保守的芳族四环素骨架,其被不同的脱氧葡萄糖取代。在糖基转移酶(GT)的适当修饰后,脱氧葡萄糖对许多细菌天然产物的生物活性至关重要。获得高度纯化的活性GTs的困难阻碍了对天然产物GTs的生化研究。在本文中,一种新的大肠杆菌融合质粒pGro7,其中引入了天黑链霉菌的伴侣基因groEL1、groES和groEL2。来自链霉菌ATCC27952的糖基转移酶DnmS与质粒pGro7'共表达,并实现了DnmS在大肠杆菌表达系统中前所未有的高效可溶性表达。随后,验证了DnmS和DnmQ的反糖基化反应特性。我们发现DnmS和DnmQ在同时参与反应时具有最高的酶活性。这些研究为GTs在链霉菌中的可溶性表达提供了策略,并证实了GTs催化反应的可逆性。这为生产活性蒽环类抗生素和增强天然产物的多样性提供了强有力的方法。
    Anthracyclines are an important class of natural antitumor drugs. They have a conservative aromatic tetracycline backbone that is substituted with different deoxyglucoses. The deoxyglucoses are crucial for the biological activity of many bacterial natural products after the proper modification from glycosyltransferases (GTs). The difficulty in obtaining highly purified active GTs has prevented biochemical studies on natural product GTs. In this paper, a new Escherichia coli fusion plasmid pGro7\', which introduces the Streptomyces coelicolor chaperone genes groEL1, groES and groEL2, was constructed. The glycosyltransferase DnmS from Streptomyces peucetius ATCC 27952 was co-expressed with the plasmid pGro7\', and unprecedented high-efficiency and soluble expression of DnmS in the E. coli expression system was realized. Subsequently, the reverse glycosylation reaction characteristics of DnmS and DnmQ were verified. We found that DnmS and DnmQ had the highest enzyme activity when they participated in the reaction at the same time. These studies provide a strategy for the soluble expression of GTs in Streptomyces and confirm the reversibility of the catalytic reaction of GTs. This provides a powerful method for the production of active anthracyclines and to enhance the diversity of natural products.
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  • 文章类型: Journal Article
    Objective: To investigate the protective effect of Colgalt2 gene deletion on acute liver injury induced by acetaminophen (APAP) in mice. Methods: Colgalt2(+/+) wild-type control mice and Colgalt2(-/-) mice (all C57BL/6J strains) were selected as the research subject. APAP solution was injected intraperitoneally to establish a mouse model of acute liver injury. The mouse were divided into four groups: Colgalt2(+/+) wild-type control group, Colgalt2(+/+) wild-type drug group (APAP 500 mg/kg), Colgalt2(-/-) control group, and Colgalt2(-/-) drug group (APAP 500 mg/kg). The survival rate was measured to plot survival curve. Liver function was evaluated by detecting serum ALT and AST levels. Liver histopathological changes were observed by HE staining to evaluate the condition of liver injury. Western blot was used to detect protein c-Jun N-terminal kinase (JNK)-related liver injury. Results: Compared with Colgalt2(+/+) mice, the survival rate was significantly increased after giving APAP to Colgalt2(-/-) mice (86.7% vs. 40%), and liver cell necrosis and inflammatory cell infiltrates of Colgalt2(+/+) mice were milder. Serum ALT, and AST level was significantly decreased [ALT: (5 291.9 ± 1 016.34) U/L vs. (1 616.9 ± 330.65) U/L, P = 0.000; AST: (4 978.0 ± 1 028.43) U/L vs. (1 851.0 ± 437.55) U/L, P = 0.000]. The expression level of JNK was significantly decreased in liver tissue. Conclusion: Colgalt2 gene deletion has a protective effect on acute liver injury induced by acetaminophen (APAP) in mice. Therefore, Colgalt2 may be a potential therapeutic option for acetaminophen-induced hepatotoxicity.
    目的: 探讨糖基转移酶Colgalt2基因缺失对于对乙酰氨基酚(APAP)导致的小鼠急性肝损伤的保护作用。 方法: 选择Colgalt2(+/+)野生型小鼠20只和Colgalt2(-/-)小鼠20只(均为C57BL/6J品系)为研究对象,腹腔注射APAP溶液建立小鼠急性肝损伤模型,将小鼠分为4组,Colgalt2(+/+)野生型对照组、Colgalt2(+/+)野生型给药组(APAP 500 mg/kg)、Colgalt2(-/-)小鼠对照组、Colgalt2(-/-)小鼠给药组(APAP 500 mg/kg),测定生存率,绘制生存曲线,通过检测血清丙氨酸转氨酶、天冬氨酸转氨酶水平评价肝脏功能,HE染色观察肝脏组织病理变化评价肝脏损伤情况,采用Western blot对肝损伤相关蛋白c-JNK氨基末端激酶(JNK)进行检测。多组样本均数的比较用方差分析,进一步两两比较方差齐者用LSD-t检验,方差不齐者用Games-Howel法。 结果: 与Colgalt2(+/+)小鼠相比,Colgalt2(-/-)小鼠给予APAP后,小鼠生存率明显升高(86.7%比40.0%),小鼠肝细胞死亡及炎性细胞浸润轻于Colgalt2(+/+)小鼠,血清丙氨酸转氨酶、天冬氨酸转氨酶水平明显降低[丙氨酸转氨酶:(5 291.90± 1 016.34)U/L比(1 616.90±330.65)U/L,P = 0.000;天冬氨酸转氨酶:(4 978.00±1 028.43)U/L比(1 851.00±437.55)U/L,P = 0.000],肝组织中JNK表达水平降低。 结论: 在APAP诱导的小鼠肝损伤中,Colgalt2基因缺失对于APAP诱导的急性肝损伤发挥保护作用,Colgalt2可能成为APAP诱导的肝毒性的潜在治疗选择。.
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  • 文章类型: Journal Article
    Glycosyltransferases (GTs) are widely present in several organisms. These enzymes specifically transfer sugar moieties to a range of substrates. The processes of bacterial glycosylation of the cell wall and their relations with host-pathogen interactions have been studied extensively, yet the majority of mycobacterial GTs involved in the cell wall synthesis remain poorly characterized. Glycopeptidolipids (GPLs) are major class of glycolipids present on the cell wall of various mycobacterial species. They play an important role in drug resistance and host-pathogen interaction virulence. Gtf3 enzyme performs a key step in the biosynthesis of triglycosylated GPLs. Here, we describe a general procedure to achieve expression, purification, and crystallization of recombinant protein Gtf3 from Mycobacterium smegmatis using an E. coli expression system. We reported also a combined bioinformatics and biochemical methods to predict aggregation propensity and improve protein solubilization of recombinant Gtf3. NVoy, a carbohydrate-based polymer reagent, was added to prevent protein aggregation by binding to hydrophobic protein surfaces of Gtf3. Using intrinsic tryptophan fluorescence quenching experiments, we also demonstrated that Gtf3-NVoy enzyme interacted with TDP and UDP nucleotide ligands. This case report proposes useful tools for the study of other glycosyltransferases which are rather difficult to characterize and crystallize.
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  • 文章类型: Journal Article
    金黄色葡萄球菌(S。金黄色葡萄球菌)在宿主和环境压力下不断进化。监测网络对于评估金黄色葡萄球菌感染的流行病学至关重要。收集来自中国三个不同地理区域的五家医院的555株金黄色葡萄球菌,进行分子特征调查。抗生素耐药性,毒力基因,和壁磷壁酸(WTA)糖基转移酶基因谱。233株(42.0%)被鉴定为MRSA,323例(58.2%)被定义为多重耐药(MDR)分离株。MRSA患病率在三个地区之间没有显着差异。相比之下,中国中部的MDR患病率明显高于中国北部(63.5%vs.50.8%,P<0.05)。鉴定出属于17个克隆复合物(CC)的38种序列类型(ST)和126种不同的spa类型。最普遍的克隆是ST59-t437(9.7%,54/555),其次是ST22-t309(7.6%,42/555)和ST5-t2460(7.2%,40/555)。大多数ST59-t437和ST5-t2460是MRSA分离株,而大多数ST22-t309是MSSA分离株。主要克隆在不同的地理区域有所不同。pvl的分布,ETB,tsst,clfb,SDRC,sdrD,hlg,fnba,hla基因在不同地区间表现出显著差异。我们发现了5个WTA糖基转移酶基因谱,tarp-/tars+/tarm-/标签-是最常见的组合。值得注意的是,在更多的CCs中鉴定出tarP基因,而不仅仅是CC5和CC398。所有16种tarP阳性分离株也含有tarS。此外,除10个ST630分离株外,几乎所有金黄色葡萄球菌分离株中都存在tarS。仅在没有tarS的12个ST630金黄色葡萄球菌分离株中的10个中检测到tagN基因。tarM基因在CC5和CC398中缺失。简而言之,分子特征之间存在区域差异,抗生素耐药性,和毒力基因谱。tarS阴性ST630谱系携带tagN,以前从未发现过,表明它可能能够表达GroP-α-GalNAcWTA并与凝固酶阴性葡萄球菌(CoNS)交换可移动遗传元件。
    Staphylococcus aureus (S. aureus) constantly evolves under host and environment pressures. The monitoring network is essential in assessing the epidemiology of S. aureus infections. A total of 555 S. aureus isolates were collected from five hospitals in three different geographical regions of China for the investigation of molecular characteristics, antibiotic resistance, virulence gene, and wall teichoic acid (WTA) glycosyltransferase gene profiles. 233 (42.0%) isolates were identified as MRSA, and 323 (58.2%) were defined as multidrug-resistant (MDR) isolates. MRSA prevalence showed no significant difference among the three regions. In contrast, the MDR prevalence was significantly higher in central China than that in northern China (63.5% vs. 50.8%, P < 0.05). Thirty-eight sequence types (STs) belonging to 17 clone complexes (CCs) and 126 distinct spa-types were identified. The most prevalent clone was ST59-t437 (9.7%, 54/555), followed by ST22-t309 (7.6%, 42/555) and ST5-t2460 (7.2%, 40/555). Most ST59-t437 and ST5-t2460 were MRSA isolates, whereas most ST22-t309 was MSSA isolates. The predominant clones varied in different geographical areas. The distribution of the pvl, etb, tsst, clfb, sdrC, sdrD, hlg, fnbA, and hla genes showed significant differences among different regions. We found five WTA glycosyltransferase gene profiles, with tarP-/tarS+/tarM-/tagN- being the most common combination. Remarkably, the tarP gene was identified in more CCs than just CC5 and CC398. All of 16 tarP-positive isolates also contained the tarS. Moreover, tarS was present in almost all S. aureus isolates except 10 ST630 isolates. The tagN gene was only detected in 10 of 12 ST630 S. aureus isolates without tarS. The tarM gene was absent in CC5 and CC398. In brief, there were regional differences among molecular characteristics, antibiotic resistance, and virulence gene profiles. The tarS-negative ST630 lineage carried the tagN, which was never found before, indicating that it may be capable of expressing GroP-α-GalNAc WTA and exchanging mobile genetic elements with coagulase-negative staphylococci (CoNS).
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  • 文章类型: Journal Article
    In the present work, the stability of crude dextransucrase from Leuconostoc citreum B-742 was evaluated in synthetic and in cashew apple juice culture broth. Optimum stability conditions for dextransucrase from L. citreum B-742 were different from the reported for its parental industrial strain enzyme (L. mesenteroides B-512F). Crude dextransucrase, from L. citreum B-742, produced using cashew apple juice as substrate, presented higher stability than the crude enzyme produced using synthetic culture medium, showing the same behavior previously reported for dextransucrase from L. mesenteroides B-512F. The crude enzyme presented good stability in cashew apple juice for 48 h at 25°C and pH 6.5.
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