diagnostic microbiology

诊断微生物学
  • 文章类型: Journal Article
    背景:作为下腰痛(LBP)原因的细菌感染和Modic变化(MC)存在争议。两项随机对照试验的结果不同,该试验研究了含和不含克拉维酸的阿莫西林与安慰剂对慢性LBP(cLBP)和MC患者的影响。以前的活检研究在方法上受到批评,很少有病人和对照组,和措施不足以减少围手术期污染。在这项研究中,我们将污染风险降至最低,包括一个控制组,并优化统计能力。主要目的是比较有和没有MC的患者之间的细菌生长。
    方法:这个多中心,病例对照研究检查cLBP患者的椎间盘和椎体活检。病例有组织取样水平的MC,控件没有。以前手术的患者作为一个亚组。在抗生素预防之前用单独的仪器对组织取样。我们将在活检中应用微生物学方法和组织学,并为显著的细菌生长预定标准,可能的污染和没有增长。微生物学家,外科医生和病理学家对病例或对照的分配视而不见。初级分析分别评估MC1相对于对照和MC2相对于对照的显著生长。先前手术患者的细菌椎间盘生长,融合组中患有大MC和椎体生长的患者都被认为是探索性分析.
    背景:挪威医疗和健康研究伦理区域委员会(REC东南部,参考编号2015/697)已批准该研究。参与研究需要书面知情同意书。该研究在ClinicalTrials.gov(NCT03406624)注册。结果将在同行评审的期刊上传播,科学会议和耐心论坛。
    背景:NCT03406624。
    BACKGROUND: Bacterial infection and Modic changes (MCs) as causes of low back pain (LBP) are debated. Results diverged between two randomised controlled trials examining the effect of amoxicillin with and without clavulanic acid versus placebo on patients with chronic LBP (cLBP) and MCs. Previous biopsy studies have been criticised with regard to methods, few patients and controls, and insufficient measures to minimise perioperative contamination. In this study, we minimise contamination risk, include a control group and optimise statistical power. The main aim is to compare bacterial growth between patients with and without MCs.
    METHODS: This multicentre, case-control study examines disc and vertebral body biopsies of patients with cLBP. Cases have MCs at the level of tissue sampling, controls do not. Previously operated patients are included as a subgroup. Tissue is sampled before antibiotic prophylaxis with separate instruments. We will apply microbiological methods and histology on biopsies, and predefine criteria for significant bacterial growth, possible contamination and no growth. Microbiologists, surgeons and pathologist are blinded to allocation of case or control. Primary analysis assesses significant growth in MC1 versus controls and MC2 versus controls separately. Bacterial disc growth in previously operated patients, patients with large MCs and growth from the vertebral body in the fusion group are all considered exploratory analyses.
    BACKGROUND: The Regional Committees for Medical and Health Research Ethics in Norway (REC South East, reference number 2015/697) has approved the study. Study participation requires written informed consent. The study is registered at ClinicalTrials.gov (NCT03406624). Results will be disseminated in peer-reviewed journals, scientific conferences and patient fora.
    BACKGROUND: NCT03406624.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景:纳米比亚是一个结核病(TB)负担很高的国家,每年估计发病率为460/10万(约12000例)。大约4.5%的新病例和7.9%以前治疗过的结核病病例是多重耐药(MDR)的,47%的耐多药结核病患者是艾滋病毒合并感染的。已发布的数据表明,特定地区的耐多药结核病传播呈集群状态。识别传播集群是实施高收益和具有成本效益的干预措施的关键。这包括了解在高传播区发现结核病例的产量(例如,社区热点,医院或家庭)提供基于社区的干预措施。我们的目标是确定这样的传播区域,以增强病例发现并评估这种方法的有效性。
    方法:H3TB是一项观察性横断面研究,评估MDR-TB主动病例发现策略。除常规痰液调查外,还将通过全基因组测序(WGS)评估纳米比亚三个地区耐多药结核病病例的痰液样本(XpertMTB/RIF,培养和药敏试验)。我们会收集家庭联系人的资料,参与者之间使用社区空间和地理地图交叉点,合成这些数据以识别传输热点。我们将看看可行性,可接受性,在这些热点中寻找案例的策略的收益和成本,以及耐多药结核病患者的家庭和住院耐多药结核病患者的访客。如果按比例缩放,将构建一个隔室传输动态模型来评估策略的影响和成本效益。
    背景:获得了伦理批准。参与者将给予知情同意。H3TB将利用与卫生和社会服务部的合作关系,对被诊断为耐多药结核病的个人进行随访,并将WGS数据与创新的联系网络映射相结合。以允许增强的病例查找。研究数据将有助于结核病控制的系统方法。同样重要的是,它将成为其他高发病率环境中类似研究的榜样.
    BACKGROUND: Namibia is a high tuberculosis (TB)-burden country with an estimated incidence of 460/100 000 (around 12 000 cases) per year. Approximately 4.5% of new cases and 7.9% of previously treated TB cases are multidrug resistant (MDR) and 47% of patients with MDR-TB are HIV coinfected. Published data suggest a clustering of MDR-TB transmission in specific areas. Identifying transmission clusters is key to implementing high-yield and cost-effective interventions. This includes knowing the yield of finding TB cases in high-transmission zones (eg, community hotspots, hospitals or households) to deliver community-based interventions. We aim to identify such transmission zones for enhanced case finding and evaluate the effectiveness of this approach.
    METHODS: H3TB is an observational cross-sectional study evaluating MDR-TB active case finding strategies. Sputum samples from MDR-TB cases in three regions of Namibia will be evaluated by whole genome sequencing (WGS) in addition to routine sputum investigations (Xpert MTB/RIF, culture and drug susceptibility testing). We will collect information on household contacts, use of community spaces and geographical map intersections between participants, synthesising these data to identify transmission hotspots. We will look at the feasibility, acceptability, yield and cost of case finding strategies in these hotspots, and in households of patients with MDR-TB and visitors of hospitalised patients with MDR-TB. A compartmental transmission dynamic model will be constructed to evaluate the impact and cost-effectiveness of the strategies if scaled.
    BACKGROUND: Ethics approval was obtained. Participants will give informed consent. H3TB will capitalise on a partnership with the Ministry of Health and Social Services to follow up individuals diagnosed with MDR-TB and integrate WGS data with innovative contact network mapping, to allow enhanced case finding. Study data will contribute towards a systems approach to TB control. Equally important, it will serve as a role model for similar studies in other high-incidence settings.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Clinical Trial Protocol
    疟疾是撒哈拉以南非洲的主要公共卫生问题之一。它对受影响国家的孕产妇和胎儿发病率和死亡率有很大影响。本研究旨在评估在前瞻性研究设计中,使用称为环介导等温扩增(LAMP)的分子检测增强病例检测对出生结局的影响。
    一项实用的随机诊断结果试验将在埃塞俄比亚不同地区的几个卫生机构进行。怀孕前三个月和第二个三个月的妇女(n=2583)将被纳入研究,并单独随机分配到护理标准或增强病例检测组,并跟随直到交货。入学人数将包括疟疾传播高峰季节。在护理臂的标准中,仅在有症状的患者中收集静脉血样本进行疟疾诊断。相比之下,在干预臂中,母亲将通过商业上可获得的ConformitéEuropéene(CE)批准的LAMP疟疾测试进行测试,显微镜和疟疾快速诊断测试,无论其症状在每次产前护理访问。这项研究的主要结果是测量出生体重。
    本研究得到以下伦理研究委员会的批准:ArmauerHansen研究所/ALERT伦理审查委员会(FORMAF-10-015.1,方案编号PO/05/20),埃塞俄比亚科学和高等教育部国家研究伦理审查委员会(批准SRA/11.7/7115/20),埃塞俄比亚食品和药物管理局(批准02/25/33/I),UCalgary联合健康研究伦理委员会(REB21-0234)。研究结果将与埃塞俄比亚卫生部等机构和利益攸关方分享,创新诊断基金会,世卫组织疟疾-热带病研究多边倡议(TDR-MIM),减少疟疾和妊娠疟疾联合会。研究结果也将发表在同行评审的期刊上,并在国际会议上发表。
    NCT03754322。
    Malaria is one of the major public health problems in sub-Saharan Africa. It contributes significantly to maternal and fetal morbidity and mortality in affected countries. This study aims to evaluate the impact of enhanced case detection using molecular testing called loop-mediated isothermal amplification (LAMP) on birth outcomes in a prospective study design.
    A pragmatic randomised diagnostic outcomes trial will be conducted in several health institutes in different Ethiopian regions. Women (n=2583) in their first and second trimesters of pregnancy will be included in the study and individually randomised to the standard of care or enhanced case detection arms, and followed until delivery. Enrolment will encompass the malaria peak transmission seasons. In the standard of care arm, a venous blood sample will be collected for malaria diagnosis only in symptomatic patients. In contrast, in the intervention arm, mothers will be tested by a commercially available Conformité Européene (CE)-approved LAMP malaria test, microscopy and rapid diagnostic test for malaria regardless of their symptoms at each antenatal care visit. The primary outcome of the study is to measure birth weight.
    The study was approved by the following ethical research boards: Armauer Hansen Research Institute/ALERT Ethics Review Committee (FORM AF-10-015.1, Protocol number PO/05/20), the Ethiopia Ministry of Science and Higher Education National Research Ethics Review Committee (approval SRA/11.7/7115/20), the Ethiopia Food and Drug Administration (approval 02/25/33/I), UCalgary Conjoint Health Research Ethics Board (REB21-0234). The study results will be shared with the institutions and stakeholders such as the Ethiopia Ministry of Health, the Foundation for Innovative Diagnostics, WHO\'s Multilateral initiative on Malaria - Tropical Diseases Research (TDR-MIM), Roll Back Malaria and the Malaria in Pregnancy Consortium. The study results will also be published in peer-reviewed journals and presented at international conferences.
    NCT03754322.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Case Reports
    球孢子菌病是居住在或最近前往流行地区的患者中怀疑的地方病。播散性疾病的频率较低,几乎总是在存在免疫抑制等风险因素的情况下出现。我们介绍了一例播散性球虫菌病,并在一名具有免疫能力的年轻男性中出现延迟。患者在从墨西哥流行地区迁移两年后出现症状。他发烧了,咳嗽,还有两个星期的呼吸急促.胸部成像显示左侧实变和胸腔积液。胸腔穿刺术排除脓胸。患者使用抗生素治疗社区获得性肺炎没有改善。细菌的全面微生物检查,病毒,分枝杆菌,和真菌病因,包括几个痰标本的培养物,胸腔积液,血,支气管肺泡灌洗,血清学测试(初始),经支气管肺活检,是非诊断性的。尽管抗生素覆盖增加到广谱,患者仍继续发烧和呼吸急促。病人接受了开放性手术肺活检,球虫病的诊断最终是通过对肺和胸膜标本进行组织病理学检查而确定的,这些标本显示球虫。病人头痛恶化,进行腰椎穿刺,脑脊液显示球虫抗体,证实脑膜播散。在患者中未发现人类免疫缺陷病毒/获得性免疫缺陷综合征或其他免疫抑制状态。值得注意的是,在最初的阴性滴度组返回强阳性后两周收集的第二组抗体滴度.患者开始服用氟康唑,但未显示临床改善,改用两性霉素B。患者病情好转,并在门诊密切临床和血清学监测下终身口服氟康唑出院。在过去的20个月中,他没有复发的迹象。
    Coccidioidomycosis is an endemic illness suspected in patients who live in or have recently traveled to an endemic area. Disseminated disease is less frequent and is almost always seen in the presence of risk factors such as immunosuppression. We present a case of disseminated coccidioidomycosis with a delayed presentation in a young immunocompetent male. The patient developed symptoms two years after migrating from the endemic region of Mexico. He presented with fever, cough, and shortness of breath for two weeks. Chest imaging revealed left-sided consolidation and pleural effusion. Empyema was ruled out by thoracentesis. The patient did not improve with antibiotics for community-acquired pneumonia. A comprehensive microbiological workup for bacterial, viral, mycobacterial, and fungal etiologies, including cultures of several specimens of sputum, pleural fluid, blood, bronchoalveolar lavage, serological tests (initial), and transbronchial lung biopsy, was nondiagnostic. The patient continued to have fever and shortness of breath despite the escalation of antibiotic coverage to broad-spectrum. The patient underwent an open surgical lung biopsy, and the diagnosis of coccidioidomycosis was ultimately established by histopathological examination of lung and pleural specimen which showed spherules of Coccidioides sp. The patient developed worsening headaches, a lumbar puncture was done and cerebrospinal fluid revealed coccidioidal antibody which confirmed meningeal dissemination. Human immunodeficiency virus/acquired immunodeficiency syndrome or other immunosuppressed state was not identified in the patient. Notably, the second set of antibody titers collected two weeks after the initial negative set of titers returned strongly positive. The patient was started on fluconazole but did not show clinical improvement and was switched to amphotericin B. Subsequently, the patient improved and was discharged on lifelong oral fluconazole with close outpatient clinical and serological monitoring. He has had no signs of relapse during the last 20 months.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

公众号