cross-correlation analysis

互相关分析
  • 文章类型: Journal Article
    Fascin是一种丝状肌动蛋白(F-actin)成束蛋白,它将F-肌动蛋白交联成束,并成为细胞表面丝状足的重要组成部分。Fascin在许多类型的癌症中过度表达。Fascin的突变影响其与F-肌动蛋白的结合能力和癌症的进展。在本文中,我们使用分子动力学(MD)模拟研究了K22,K41,K43,K241,K358,K399和K471残基的影响。对于强效应残留物,也就是说,K22,K41,K43,K358和K471,我们的结果表明,K到A的突变导致突变残基周围的均方根波动(RMSF)值很大,表明这些残留物对柔韧性和热稳定性很重要。另一方面,基于残差互相关分析,这些残基的丙氨酸突变增强了残基之间的相关性。连同RMSF数据,通过强烈的相关性将局部灵活性扩展到整个蛋白质,以影响fascin的动力学和功能。相比之下,对于K241A和K399A的突变体,它们不影响fascin的功能,与野生型fascin相比,RMSF数据没有显着差异。这些发现与实验研究非常吻合。
    Fascin is a filamentous actin (F-actin) bundling protein, which cross-links F-actin into bundles and becomes an important component of filopodia on the cell surface. Fascin is overexpressed in many types of cancers. The mutation of fascin affects its ability to bind to F-actin and the progress of cancer. In this paper, we have studied the effects of residues of K22, K41, K43, K241, K358, K399, and K471 using molecular dynamics (MD) simulation. For the strong-effect residues, that is, K22, K41, K43, K358, and K471, our results show that the mutation of K to A leads to large values of root mean square fluctuation (RMSF) around the mutated residues, indicating those residues are important for the flexibility and thermal stability. On the other hand, based on residue cross-correlation analysis, alanine mutations of these residues reinforce the correlation between residues. Together with the RMSF data, the local flexibility is extended to the entire protein by the strong correlations to influence the dynamics and function of fascin. By contrast, for the mutants of K241A and K399A those do not affect the function of fascin, the RMSF data do not show significant differences compared with wild-type fascin. These findings are in a good agreement with experimental studies.
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  • 文章类型: Journal Article
    COVID-19大流行通过其引起广泛感染的能力影响了世界。包括沙特阿拉伯王国(KSA)在内的中东也像世界其他地区一样受到了新冠肺炎疫情的打击。本研究旨在研究KSA三个城市的气象因素与COVID-19病例数之间的关系。观察了所有三个城市的COVID-19病例数的分布,然后进行了互相关分析,以估计气象因素对COVID-19病例数的滞后效应。此外,泊松模型和负二项式(NB)模型及其零膨胀版本(即,ZIP和ZINB)进行了拟合,以估计天气变量对确诊病例数的城市特定影响,并通过比较分析得出每个城市的最佳模型。我们在KSA的三个城市发现气象因素与COVID-19病例数之间存在显着关联。我们还认为ZINB模型最适合COVID-19病例数。在这个案例研究中,温度,湿度,湿度和风速是影响COVID-19病例数的因素。结果可用于制定政策以克服未来的这种大流行情况,例如通过在我们观察到风速或湿度明显较高的地区进行测试和跟踪来部署更多资源。此外,选定的模型可用于预测不同地区COVID-19的发病概率.
    The COVID-19 pandemic affected the world through its ability to cause widespread infection. The Middle East including the Kingdom of Saudi Arabia (KSA) has also been hit by the COVID-19 pandemic like the rest of the world. This study aims to examine the relationships between meteorological factors and COVID-19 case counts in three cities of the KSA. The distribution of the COVID-19 case counts was observed for all three cities followed by cross-correlation analysis which was carried out to estimate the lag effects of meteorological factors on COVID-19 case counts. Moreover, the Poisson model and negative binomial (NB) model with their zero-inflated versions (i.e., ZIP and ZINB) were fitted to estimate city-specific impacts of weather variables on confirmed case counts, and the best model is evaluated by comparative analysis for each city. We found significant associations between meteorological factors and COVID-19 case counts in three cities of KSA. We also perceived that the ZINB model was the best fitted for COVID-19 case counts. In this case study, temperature, humidity, and wind speed were the factors that affected COVID-19 case counts. The results can be used to make policies to overcome this pandemic situation in the future such as deploying more resources through testing and tracking in such areas where we observe significantly higher wind speed or higher humidity. Moreover, the selected models can be used for predicting the probability of COVID-19 incidence across various regions.
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  • 文章类型: Journal Article
    Lake Urmia (LU) is the second largest hypersaline lake in the world. Lake Urmia\'s water level has dropped drastically from 1277.85 m to 1270.08 m a.s.l (equal to 7.77 m) during the last 20 years, equivalent to a loss of 70% of the lake area. The likelihood of lake-groundwater connection on the basin-scale is uncertain and understudied because of lack of basic data and precise information required for physically-based modeling. In this study, cross-correlation analysis is applied on a various time-frames of water level of the lake and groundwater levels (2001-2018) recorded in 797 observation wells across 17 adjacent aquifers. This provides insightful information on the lake-groundwater interaction. The cross-correlation coefficient between the monthly water level of lake and observations wells (rGW-L) and the difference of these two variables (Hf) was calculated for different time-frames. The values of rGW-L (ranged -0.69 to 0.97) and Hf (ranged -53 m to 293 m) indicated the significant role of time-frames of observed dataset on dynamic behavior of lake-groundwater interaction, and exchange fluxes in the study setting. Results suggested two opposing behaviors in lake-groundwater interaction of the study system mainly arise from anthropogenic activity (overexploitation of groundwater for irrigation) and aquifer type (unconfined/pressurized): three out of 17 adjacent aquifers are feeding by the LU and act as \"gaining aquifers\" (located in northern half of LU) and others discharging into the LU and act as \"losing aquifers\". This study aimed to provide easy-to-obtain insights into LGWI in the complex setting of LU Basin. It can be considered a preliminary step towards a deeper understanding of the interaction through physically-based analysis and modeling.
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