copy number variation sequencing

拷贝数变异测序
  • 文章类型: Case Reports
    背景:三体7镶嵌的临床表现是多样和非特异性的,所以产前诊断是非常困难的。
    方法:纳入2例产前筛查结果异常的孕妇。一个是22岁的女性(G1P0)。妊娠31周,超声显示,左侧脑室后角为10毫米,右肾盂间隔为7毫米。另一名孕妇33岁(G2P1L1A0),她的胎儿在妊娠第24周被发现有心脏畸形。拷贝数变异测序,羊膜穿刺术后进行全外显子组测序和核型分析,两个胎儿都被诊断为三体7镶嵌。经过家长咨询,一名妇女继续怀孕,另一个女人终止了怀孕.
    结论:在三体7镶嵌中,三体比例低不会导致流产,但是会导致胎儿发育异常,可以通过超声波检测到。因此,临床医生需要更加关注胎儿生长发育的各个方面,结合成像,细胞,分子遗传学等方法对胎儿进行综合评价,为孕妇提供更可靠的遗传咨询。
    BACKGROUND: The clinical manifestations of trisomy 7 mosaicism are diverse and nonspecific, so prenatal diagnosis is very difficult.
    METHODS: Two pregnant women with abnormal prenatal screening results were included. One was a 22-year-old woman (G1P0). At 31st week of gestation, ultrasound revealed that the posterior horn of the left lateral ventricle was 10 mm and the right renal pelvis had a separation of 7 mm. The other pregnant woman was 33 years old (G2P1L1A0), and her fetus was found to have a cardiac malformation at the 24th week of gestation. Copy number variation sequencing, whole-exome sequencing and karyotype analysis were carried out after amniocentesis, and both fetuses were diagnosed with trisomy 7 mosaicism. After parental counseling, one woman continued the pregnancy, and the other woman terminated the pregnancy.
    CONCLUSIONS: In trisomy 7 mosaicism, the low proportion of trisomy does not lead to abortion, but can result in abnormal fetal development, which can be detected via ultrasound. Therefore, clinicians need to pay more attention to various aspects of fetal growth and development, combining with imaging, cellular, molecular genetics and other methods to perform comprehensive evaluations of fetuses to provide more reliable genetic counseling for pregnant women.
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  • 文章类型: Case Reports
    背景:定量荧光聚合酶链反应(QF-PCR)是一种快速产前诊断21、18和13号染色体异常和性染色体非整倍体的方法。然而,QF-PCR诊断染色体结构异常的价值有限.在这篇文章中,我们报告了1例接受羊膜穿刺术的孕妇的一个令人困惑的QF-PCR发现.
    方法:位于性染色体上的短串联重复序列标记AMXY(Xp22.2/Yp11.2)表现出三体双等位基因模式,表明胎儿的核型可能是47,XYY。对培养的羊膜细胞进行的染色体分析显示胎儿的正常男性核型。拷贝数变异测序证实了在Yp11.2-Yp11.2(chrY:6610001_7110000)处的500kb重复和在Yp11.2-Yp11.2(chrY:7110001_7360000)处的250kb重复。
    结论:结论:不同方法的综合应用,染色体检测对染色体异常的产前诊断具有较高的检出率和准确性。
    BACKGROUND: Quantitative fluorescent polymerase chain reaction (QF-PCR) is a rapid prenatal diagnostic method for abnormalities on chromosomes 21, 18, and 13 and sex chromosomal aneuploidy. However, the value of QF-PCR in diagnosing chromosomal structural abnormalities is limited. In this article, we report a confusing QF-PCR finding in a pregnant woman who underwent amniocentesis.
    METHODS: The short tandem repeat marker AMXY (Xp22.2/Yp11.2) located on the sex chromosome exhibited a trisomic biallelic pattern, indicating that the karyotype of the fetus might be 47,XYY. Chromosome analysis performed on cultured amniocytes showed a normal male karyotype of the fetus. Copy number variation sequencing confirmed a 500 kb duplication at Yp11.2-Yp11.2 (chrY:6610001_ 7110000) and a 250 kb duplication at Yp11.2-Yp11.2 (chrY:7110001_7360000).
    CONCLUSIONS: In conclusion, the comprehensive application of different methods could achieve a higher detection rate and accuracy for the prenatal diagnosis of chromosomal disorders through chromosomal testing.
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  • 文章类型: Case Reports
    染色体镶嵌仍然是一个永久的诊断和临床难题。在本研究中,我们使用多种基因检测方法检测了2例产前9三体马赛克综合征病例。非侵入性产前检测(NIPT)结果表明,两个胎儿中的三体9。羊膜细胞的核型分析显示高水平(42%-50%)的镶嵌性,未培养羊膜细胞的染色体微阵列分析(CMA)显示,除了杂合性的大片段丢失外,没有拷贝数变异(CNV)。超声检查结果是无法标记的,除了小于胎龄。在病例1中,进一步的脐血穿刺通过CMA和荧光原位杂交(FISH)分别证实了22.4%和34%的9三体镶嵌性。在综合考虑遗传和超声结果后,两名孕妇决定接受来自流产胎儿和胎盘的多个组织样本的选择性终止和分子检查。结果证实了真正的胎儿胎盘镶嵌的存在,在各种组织中,三体9镶嵌的水平从76%变为正常。这两个案例突显了对孕妇进行遗传咨询的必要性,其NIPT结果高度表明9号染色体的风险,以确定镶嵌性的发生。此外,建议在产前诊断中综合使用多种遗传技术和生物样本,以避免假阴性结果.还应该注意的是,具有真正的三体性9镶嵌性的器官的超声结果在怀孕期间可以没有结构异常。
    Chromosomal mosaicism remains a perpetual diagnostic and clinical dilemma. In the present study, we detected two prenatal trisomy 9 mosaic syndrome cases by using multiple genetic testing methods. The non-invasive prenatal testing (NIPT) results suggested trisomy 9 in two fetuses. Karyotype analysis of amniocytes showed a high level (42%-50%) of mosaicism, and chromosomal microarray analysis (CMA) of uncultured amniocytes showed no copy number variation (CNV) except for large fragment loss of heterozygosity. Ultrasound findings were unmarkable except for small for gestational age. In Case 1, further umbilical blood puncture confirmed 22.4% and 34% trisomy 9 mosaicism by CMA and fluorescent in situ hybridization (FISH) respectively. After comprehensive consideration of the genetic and ultrasound results, the two gravidas decided to receive elective termination and molecular investigations of multiple tissue samples from the aborted fetus and the placenta. The results confirmed the presence of true fetoplacental mosaicism with levels of trisomy 9 mosaicism from 76% to normal in various tissues. These two cases highlight the necessity of genetic counseling for gravidas whose NIPT results highly suggest the risk of chromosome 9 to ascertain the occurrence of mosaicism. In addition, the comprehensive use of multiple genetic techniques and biological samples is recommended for prenatal diagnosis to avoid false-negative results. It should also be noted that ultrasound results of organs with true trisomy 9 mosaicism can be free of structural abnormalities during pregnancy.
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  • 文章类型: Case Reports
    来自6号染色体短臂的小的多余标记染色体(sSMC)很少见,其临床意义尚不清楚。没有报道无着丝粒DNA的sSMC(6)的病例。远端6p部分三体和四体是一种罕见但临床上独特的综合征。我们报告了在男婴中引起6p23-p25.3部分四体的从头马赛克sSMC,其症状为小于胎龄,小头畸形,面部畸形,先天性眼部缺陷,和多系统畸形。常规细胞遗传学分析显示核型为47,XY,+mar[25]/46,XY[22]。阵列比较基因组杂交(aCGH)显示远端6p的镶嵌四体。这是由反向重复的新中心sSMC引起的马赛克四体性6p23-p25.3的第一例,具有三体性远端6p的特征。在6p23-p25.3的三体性和四体性病例中,表型的比较可以促进基因型-表型的相关性,并鉴定有助于其表达的候选基因。眼前段发育不全和肾脏系统异常的表现表明FOXC1基因的三倍体敏感性。在小头畸形生长迟缓的患者中,心脏和肾脏系统的畸形,前节发育不全的表现可能表明染色体6p重复,和aCGH评估应进行相关的综合征疾病。
    Small supernumerary marker chromosomes (sSMCs) derived from the chromosome 6 short arm are rare and their clinical significance remains unknown. No case with sSMC(6) without centromeric DNA has been reported. Partial trisomy and tetrasomy of distal 6p is a rare but clinically distinct syndrome. We report on a de novo mosaic sSMC causing partial tetrasomy for 6p23-p25.3 in a male infant with symptoms of being small for gestational age, microcephaly, facial dysmorphism, congenital eye defects, and multi-system malformation. Conventional cytogenetic analysis revealed a karyotype of 47,XY,+mar [25]/46,XY [22]. Array comparative genomic hybridization (aCGH) revealed mosaic tetrasomy of distal 6p. This is the first case of mosaic tetrasomy 6p23-p25.3 caused by an inverted duplicated neocentric sSMC with characteristic features of trisomy distal 6p. Comparison of phenotypes in cases with trisomy and tetrasomy of 6p23-p25.3 could facilitate a genotype-phenotype correlation and identification of candidate genes contributing to their presentation. The presentation of anterior segment dysgenesis and anomaly of the renal system suggest triplosensitivity of the FOXC1 gene. In patients with microcephaly growth retardation, and malformation of the cardiac and renal systems, presentation of anterior segment dysgenesis might be indicative of chromosome 6p duplication, and aCGH evaluation should be performed for associated syndromic disease.
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  • 文章类型: Case Reports
    背景:胎儿先天性心脏病(CHD)是最常见的先天性心脏病,发病率为0.6-0.8%,占婴儿先天性疾病死亡人数的30-50%。冠心病的发病机制尚不清楚,因此,积极有效的产前诊断对冠心病的预防和控制非常重要。在这里,据报道,中国CHD患者在DNAH9基因中具有罕见的复合杂合突变,预测了DNAH9蛋白的三维结构和功能变化。病例介绍:一名23岁的孕妇在妊娠27周时来我院进行产前诊断。她和她的伴侣都没有受到影响。通过超声筛查检测胎儿CHD。拷贝数变异测序(CNV-seq)揭示了在chr17p12(11,486,795-11,568,385)处的81kb缺失,包括DNAH9基因的外显子1-15,在心脏发育中起着关键作用。然后,使用全外显子组测序(WES),并在DNAH9中鉴定出无义突变(c.10975C>T),该突变导致从谷氨酰胺到终止的氨基酸3,659突变。使用SWISS-MODEL预测了3D突变蛋白结构,并显示了从功能性β-折叠和α-螺旋到终止的结构变化,分别。结论:我们描述了一例由DNAH9突变引起的胎儿CHD,并为识别基因内缺失提供了有效的诊断技术。该诊断过程可能涉及CHD的产前诊断。
    Background: Fetal congenital heart disease (CHD) is the most common congenital defect, with an incidence of 0.6-0.8%, accounting for 30-50% of infant congenital disease deaths. The pathogenesis of CHD is still unclear, so an active and effective prenatal diagnosis is very important for the prevention and control of CHD. Herein, a Chinese CHD patient with rare compound heterozygous mutations in the DNAH9 gene was reported, and the 3D structure and functional changes of DNAH9 protein were predicted. Case presentation: A 23-year-old pregnant woman came to our hospital for prenatal diagnosis at 27 weeks of gestation. Both she and her partner were unaffected. Fetal CHD was detected by ultrasound screening. Copy number variation sequencing (CNV-seq) revealed an 81 kb deletion at chr17p12 (11,486,795-11,568,385), including exons 1-15 of DNAH9 gene, which plays a key role in cardiac development. Then, whole exome sequencing (WES) was used and identified a nonsense mutation (c.10975C>T) in DNAH9, which resulted in the mutation of amino acid 3,659 from glutamine to termination. The 3D mutant protein structures were predicted using SWISS-MODEL and showed structural changes from functional β-sheet and α-helix to termination, respectively. Conclusion: We describe a case of fetal CHD caused by DNAH9 mutations and provide an effective diagnostic technique for identifying intragenic deletions. This diagnostic process can be implicated in prenatal diagnosis of CHD.
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