biosurveillance

生物监测
  • 文章类型: Journal Article
    迫切需要在目的地市场的边境入境点对不受管制的非洲肉类进口进行生物监测。最近与外来野生动物产品有关的大流行强调了这一点。我们的目标是对从非洲非正式运输到欧洲的肉类数量进行分类,而无需进行任何兽医或卫生检查。我们搜索并纳入了同行评审的研究,这些研究包含有关来自非洲大陆的不受管制的肉类的洲际运动的数据。随后是对这种肉的报告污染的调查。我们纳入了15项机场研究,但有关该主题的数据有限。这篇评论中包含的参考文献描述了在边境检查站发现的肉类数量和病原体的存在。发现存在致病病原体,结果被组织成细菌,病毒,和寄生虫类别。这篇评论中发现的动物肉物种与CITES保护物种有关,其中一些是已知的传染病宿主。这对供应链上的人群构成了潜在的、不可量化的人类健康风险。以及供应国生物多样性的丧失。这次审查中描述的肉类样本主要是由海关官员投机取巧地发现的,表明对通过边境检查站未被发现的总量的任何估计必须保持暂定,并且不能排除它确实高得多的可能性。我们为未来在边境入境点进口非洲肉类的研究提出了一个模板。这项审查的结果说明了关于全球不受管制的非洲肉类进口数量的知识和空白,它可能含有的病原体,以及这种肉的洲际运动导致的生物多样性丧失。
    There is an urgent need for biosurveillance of unregulated African meat imports at border points of entry in destination markets. This is underscored by recent pandemics linked to exotic wildlife products. Our objective was to catalog the quantity of meat that is informally transported from Africa into and through Europe often without any veterinary or sanitary checks. We searched and included peer-reviewed studies that contained data on the intercontinental movement of unregulated meat from the African continent. This was followed by an investigation of the reported contamination of such meat. We included fifteen airport studies with limited data on this topic. The references included in this review describe the quantity of meat found at border inspection posts and the presence of pathogens. Disease-causing pathogens were found to be present, and the results are organized into bacteria, virus, and parasite categories. The species of animal meat found in this review were linked to CITES-protected species some of which are known reservoir hosts for infectious diseases. This represents a potential and unquantified human health risk to populations along the supply chain, and a loss to biodiversity in supply countries. Meat samples described in this review were primarily found opportunistically by Customs officials, indicating that any estimate of the total quantities passing undetected through border checkpoints must remain tentative, and cannot rule out the possibility that it is indeed considerably higher. We propose a template for future studies regarding African meat imports at border points of entry. The result of this review illustrates a gap in knowledge and lacunae regarding the amount of unregulated African meat imports worldwide, the pathogens it may contain, and the resulting biodiversity loss that occurs from the intercontinental movement of this meat.
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  • 文章类型: Journal Article
    随着科学技术的进步,生物技术正变得越来越容易被所有人口统计数据的人所接受。这些进步不可避免地有望大大改善个人和人口的福祉和福利。矛盾的是,尽管在人口水平上更多地获得生物技术有许多优势,由于意外或恶意使用,它也可能增加生物灾难的可能性和频率。类似于“疾病X”(描述具有大流行潜力的未知自然出现的致病疾病),迄今为止,我们从生物技术中将这种未知的风险称为“生物灾难X”。没有研究研究研究信息技术在预防和减轻BiojasterX中的潜在作用。
    本研究旨在探索(1)BiojasterX可能需要什么,以及(2)使用人工智能(AI)和新兴的6G技术来帮助监测和管理BiojasterX威胁的解决方案。
    在PubMed上对应用AI和6G技术监测和管理生物灾害的文献进行了综述,使用从数据库开始到2020年11月16日发表的文章。
    我们的研究结果表明,生物灾难X有可能颠覆生命和生计,破坏经济。本质上对全世界的文明构成了迫在眉睫的风险。为了揭示生物灾难X的威胁,我们详细介绍了有效的人工智能和6G支持策略,从自然语言处理到基于深度学习的图像分析,以解决从早期BiocramicX检测到的问题(例如,可疑行为的识别),药品的远程设计和开发(例如,治疗发展),和公共卫生干预措施(例如,被动的家庭庇护所任务执行),以及灾难恢复(例如,对社交媒体帖子进行情绪分析,以揭示公众的感受和恢复建设的准备情况)。
    生物灾难X是一场迫在眉睫但可以避免的灾难。考虑到BiocramicX可能造成的潜在人类和经济后果,必须迅速、主动地采取能够有效监测和管理BiojasterX威胁的行动。而不是仅仅依靠健康专家和政府官员过度的专业关注,部署基于技术的解决方案来预防和控制BioquasterX威胁可能更具成本效益和实用性。本研究讨论了BiocramaX可能带来的问题,并强调了通过AI技术和6G技术监控和管理BiocramaX威胁的重要性。未来的研究可以探索AI和6G系统的融合如何进一步推进对高影响的准备。生物灾难X以外的可能性较小。
    With advances in science and technology, biotechnology is becoming more accessible to people of all demographics. These advances inevitably hold the promise to improve personal and population well-being and welfare substantially. It is paradoxical that while greater access to biotechnology on a population level has many advantages, it may also increase the likelihood and frequency of biodisasters due to accidental or malicious use. Similar to \"Disease X\" (describing unknown naturally emerging pathogenic diseases with a pandemic potential), we term this unknown risk from biotechnologies \"Biodisaster X.\" To date, no studies have examined the potential role of information technologies in preventing and mitigating Biodisaster X.
    This study aimed to explore (1) what Biodisaster X might entail and (2) solutions that use artificial intelligence (AI) and emerging 6G technologies to help monitor and manage Biodisaster X threats.
    A review of the literature on applying AI and 6G technologies for monitoring and managing biodisasters was conducted on PubMed, using articles published from database inception through to November 16, 2020.
    Our findings show that Biodisaster X has the potential to upend lives and livelihoods and destroy economies, essentially posing a looming risk for civilizations worldwide. To shed light on Biodisaster X threats, we detailed effective AI and 6G-enabled strategies, ranging from natural language processing to deep learning-based image analysis to address issues ranging from early Biodisaster X detection (eg, identification of suspicious behaviors), remote design and development of pharmaceuticals (eg, treatment development), and public health interventions (eg, reactive shelter-at-home mandate enforcement), as well as disaster recovery (eg, sentiment analysis of social media posts to shed light on the public\'s feelings and readiness for recovery building).
    Biodisaster X is a looming but avoidable catastrophe. Considering the potential human and economic consequences Biodisaster X could cause, actions that can effectively monitor and manage Biodisaster X threats must be taken promptly and proactively. Rather than solely depending on overstretched professional attention of health experts and government officials, it is perhaps more cost-effective and practical to deploy technology-based solutions to prevent and control Biodisaster X threats. This study discusses what Biodisaster X could entail and emphasizes the importance of monitoring and managing Biodisaster X threats by AI techniques and 6G technologies. Future studies could explore how the convergence of AI and 6G systems may further advance the preparedness for high-impact, less likely events beyond Biodisaster X.
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  • 文章类型: Journal Article
    这篇综述介绍了动物健康监测(AHSyS)领域的当前举措和发展潜力,从它的出现到兽医公共卫生领域的前沿已经过去了5年。使用了系统审查方法来记录正在进行的AHSyS倡议(活动系统和处于试点阶段的系统)和最近的方法发展。来自从业者的临床数据和实验室数据仍然是AHSyS的主要数据来源。然而,虽然目前尚未纳入前瞻性运行的举措,生产数据,死亡率数据,屠宰场数据,和新媒体来源(如互联网搜索)一直是越来越多的出版物寻求开发和验证新的AHSyS指标的目标。AHSyS固有的一些限制,例如报告可持续性和缺乏分类标准,继续阻碍了自动综合征分析和解释的发展。在动物健康数据电子采集无处不在的时代,监视专家对运行多变量系统(同时监视多个数据流)越来越感兴趣,因为它们比单变量系统推断更准确。因此,贝叶斯方法,更容易发现多个综合征数据源之间的相互作用,预计将在AHSyS的未来发挥重要作用。很明显,早期发现疫情可能不是AHSyS的主要预期好处。随着更多的系统将进入积极的预期阶段,在过去五年的密集发展阶段之后,这项研究设想AHSyS,特别是对牲畜来说,为未来的国际做出重大贡献-,national-,和地方动物健康情报,通过在食品生产链的各个阶段提供对动物福利和健康的扎实认识,超越了对疾病事件的检测和监测,以及对这一价值链中涉及参与者的风险管理的理解。
    This review presents the current initiatives and potential for development in the field of animal health surveillance (AHSyS), 5 years on from its advent to the front of the veterinary public health scene. A systematic review approach was used to document the ongoing AHSyS initiatives (active systems and those in pilot phase) and recent methodological developments. Clinical data from practitioners and laboratory data remain the main data sources for AHSyS. However, although not currently integrated into prospectively running initiatives, production data, mortality data, abattoir data, and new media sources (such as Internet searches) have been the objective of an increasing number of publications seeking to develop and validate new AHSyS indicators. Some limitations inherent to AHSyS such as reporting sustainability and the lack of classification standards continue to hinder the development of automated syndromic analysis and interpretation. In an era of ubiquitous electronic collection of animal health data, surveillance experts are increasingly interested in running multivariate systems (which concurrently monitor several data streams) as they are inferentially more accurate than univariate systems. Thus, Bayesian methodologies, which are much more apt to discover the interplay among multiple syndromic data sources, are foreseen to play a big part in the future of AHSyS. It has become clear that early detection of outbreaks may not be the principal expected benefit of AHSyS. As more systems will enter an active prospective phase, following the intensive development stage of the last 5 years, the study envisions AHSyS, in particular for livestock, to significantly contribute to future international-, national-, and local-level animal health intelligence, going beyond the detection and monitoring of disease events by contributing solid situation awareness of animal welfare and health at various stages along the food-producing chain, and an understanding of the risk management involving actors in this value chain.
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  • 文章类型: Journal Article
    Internet access and usage has changed how people seek and report health information. Meanwhile,infectious diseases continue to threaten humanity. The analysis of Big Data, or vast digital data, presents an opportunity to improve disease surveillance and epidemic intelligence. Epidemic intelligence contains two components: indicator based and event-based. A relatively new surveillance type has emerged called event-based Internet biosurveillance systems. These systems use information on events impacting health from Internet sources, such as social media or news aggregates. These systems circumvent the limitations of traditional reporting systems by being inexpensive, transparent, and flexible. Yet, innovations and the functionality of these systems can change rapidly.
    To update the current state of knowledge on event-based Internet biosurveillance systems by identifying all systems, including current functionality, with hopes to aid decision makers with whether to incorporate new methods into comprehensive programmes of surveillance.
    A systematic review was performed through PubMed, Scopus, and Google Scholar databases, while also including grey literature and other publication types.
    50 event-based Internet systems were identified, including an extraction of 15 attributes for each system, described in 99 articles. Each system uses different innovative technology and data sources to gather data, process, and disseminate data to detect infectious disease outbreaks.
    The review emphasises the importance of using both formal and informal sources for timely and accurate infectious disease outbreak surveillance, cataloguing all event-based Internet biosurveillance systems. By doing so, future researchers will be able to use this review as a library for referencing systems, with hopes of learning, building, and expanding Internet-based surveillance systems. Event-based Internet biosurveillance should act as an extension of traditional systems, to be utilised as an additional, supplemental data source to have a more comprehensive estimate of disease burden.
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  • 文章类型: Journal Article
    Reliable monitoring of influenza seasons and pandemic outbreaks is essential for response planning, but compilations of reports on detection and prediction algorithm performance in influenza control practice are largely missing. The aim of this study is to perform a metanarrative review of prospective evaluations of influenza outbreak detection and prediction algorithms restricted settings where authentic surveillance data have been used.
    The study was performed as a metanarrative review. An electronic literature search was performed, papers selected and qualitative and semiquantitative content analyses were conducted. For data extraction and interpretations, researcher triangulation was used for quality assurance.
    Eight prospective evaluations were found that used authentic surveillance data: three studies evaluating detection and five studies evaluating prediction. The methodological perspectives and experiences from the evaluations were found to have been reported in narrative formats representing biodefence informatics and health policy research, respectively. The biodefence informatics narrative having an emphasis on verification of technically and mathematically sound algorithms constituted a large part of the reporting. Four evaluations were reported as health policy research narratives, thus formulated in a manner that allows the results to qualify as policy evidence.
    Awareness of the narrative format in which results are reported is essential when interpreting algorithm evaluations from an infectious disease control practice perspective.
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  • 文章类型: Journal Article
    BACKGROUND: Individual case review of spontaneous adverse event (AE) reports remains a cornerstone of medical product safety surveillance for industry and regulators. Previously we developed the Vaccine Adverse Event Text Miner (VaeTM) to offer automated information extraction and potentially accelerate the evaluation of large volumes of unstructured data and facilitate signal detection.
    OBJECTIVE: To assess how the information extraction performed by VaeTM impacts the accuracy of a medical expert\'s review of the vaccine adverse event report.
    METHODS: The \"outcome of interest\" (diagnosis, cause of death, second level diagnosis), \"onset time,\" and \"alternative explanations\" (drug, medical and family history) for the adverse event were extracted from 1000 reports from the Vaccine Adverse Event Reporting System (VAERS) using the VaeTM system. We compared the human interpretation, by medical experts, of the VaeTM extracted data with their interpretation of the traditional full text reports for these three variables. Two experienced clinicians alternately reviewed text miner output and full text. A third clinician scored the match rate using a predefined algorithm; the proportion of matches and 95% confidence intervals (CI) were calculated. Review time per report was analyzed.
    RESULTS: Proportion of matches between the interpretation of the VaeTM extracted data, compared to the interpretation of the full text: 93% for outcome of interest (95% CI: 91-94%) and 78% for alternative explanation (95% CI: 75-81%). Extracted data on the time to onset was used in 14% of cases and was a match in 54% (95% CI: 46-63%) of those cases. When supported by structured time data from reports, the match for time to onset was 79% (95% CI: 76-81%). The extracted text averaged 136 (74%) fewer words, resulting in a mean reduction in review time of 50 (58%) seconds per report.
    CONCLUSIONS: Despite a 74% reduction in words, the clinical conclusion from VaeTM extracted data agreed with the full text in 93% and 78% of reports for the outcome of interest and alternative explanation, respectively. The limited amount of extracted time interval data indicates the need for further development of this feature. VaeTM may improve review efficiency, but further study is needed to determine if this level of agreement is sufficient for routine use.
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  • 文章类型: Journal Article
    Electronic event-based biosurveillance systems (EEBS\'s) that use near real-time information from the internet are an increasingly important source of epidemiologic intelligence. However, there has not been a systematic assessment of EEBS evaluations, which could identify key uncertainties about current systems and guide EEBS development to most effectively exploit web-based information for biosurveillance. To conduct this assessment, we searched PubMed and Google Scholar to identify peer-reviewed evaluations of EEBS\'s. We included EEBS\'s that use publicly available internet information sources, cover events that are relevant to human health, and have global scope. To assess the publications using a common framework, we constructed a list of 17 EEBS attributes from published guidelines for evaluating health surveillance systems. We identified 11 EEBS\'s and 20 evaluations of these EEBS\'s. The number of published evaluations per EEBS ranged from 1 (Gen-Db, GODsN, MiTAP) to 8 (GPHIN, HealthMap). The median number of evaluation variables assessed per EEBS was 8 (range, 3-15). Ten published evaluations contained quantitative assessments of at least one key variable. No evaluations examined usefulness by identifying specific public health decisions, actions, or outcomes resulting from EEBS outputs. Future EEBS assessments should identify and discuss critical indicators of public health utility, especially the impact of EEBS\'s on public health response.
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  • 文章类型: English Abstract
    Syndromic surveillance appeared in the field of public health surveillance in the late 90\'s. Initially proposed for public health identification of bioterrorism events, the method failed to provide convincing evidence of its usefulness and potential benefits. The definition which is proposed today by the Centers for Disease Control and Prevention (CDC) of Atlanta is the most commonly accepted. It defines syndromic surveillance as an automatic process that goes from registration to transfer of data recorded within the framework of a professional rather than public health goal. Systems operating today have integrated a public health approach through routine surveillance procedures with a broader focus than bioterrorism, implying active participation of the official public health surveillance structures. Syndromic surveillance offers several advantages including quick access to a large volume of data in real time, no extra-work for data registration and construction of a historical dataset useful as an historical baseline. Nevertheless, the limitations of this type of surveillance should not be forgotten (sometimes limited sensitivity, specificity, important technical burden…). Today, recorded experience shows that there is no opposition between syndromic surveillance and classical surveillance. On the contrary, they should be presented as complementary procedures. Syndromic surveillance should be analyzed from a temporal perspective, examining its short-term use as an alert mechanism, mid-term use for constitution of historical time series, and long-term use for a description of human health in the 21st century.
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